2NUN | Genus

Total Genus 99

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	99
sequence length	304
structure length	301
Chain Sequence	TSFNEASRTSFRALPGPSQRQLEVYDQCLIGAARWPDDSNTPENRAYCQSMYNSIRSAGDEISRGGITSFEELWGRATEWRLSKLQRGEPLYSAFASERTSDTDAVTPLVKPYKSVLARVVDHEDAHDEIMQDNLFGDLNVKVYRQTAYLHGNVIPLNTFRVATDTEYLRDRVAHLRTELGAKALKQHLQRYNPDRIDHTNASYLPIIKDHLNDLYRQAISSDLSQAELISLIARTHWWAASAMPDQRGSAAKAEFAARAIASAHGIELPPFRNGNVSDIEAMLSGEEEFVEKYRSLLDSD

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Toxin/protein binding
source organism	Pseudomonas syringae pv. glycinea
publication title	Type III Effector Activation via Nucleotide Binding, Phosphorylation, and Host Target Interaction. pubmed doi rcsb
molecule keywords	Avirulence B protein
total genus	99
structure length	301
sequence length	304
ec nomenclature
pdb deposition date	2006-11-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF05394	AvrB_AvrC	Avirulence protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.20	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fic-like fold	2nunA01

2NUNA 1NH1A 2NUDA
chains in the Genus database with same CATH superfamily

4LU4A 4X2CA 2F6SA 4XI8A 4U07A 5CKLA 2VZAA 3ZC7A 5EU0A 3LETA 4U0SA 3ZLMA 3ZCBA 4U0ZA 2G03A 2JK8A 3N3UA 5JJ6A 5JJ7A 2VY3A 5JFFA 2NUNA 5CMTA 5JFZA 3CUCA 4PY3A 3SE5A 4U0UA 5CGLA 1NH1A 3SN9A 4X2EA 4N67A 4NPSA 4WGJA 2NUDA 4X2DA 3S6AA 3SHGA 4U04A 4ITRA 4M16A
chains in the Genus database with same CATH topology

2NUNA 1NH1A 2NUDA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2NUN A;  1NH1 A;  2NUD A; 
#chains in the Genus database with same CATH topology
 4LU4 A;  4X2C A;  2F6S A;  4XI8 A;  4U07 A;  5CKL A;  2VZA A;  3ZC7 A;  5EU0 A;  3LET A;  4U0S A;  3ZLM A;  3ZCB A;  4U0Z A;  2G03 A;  2JK8 A;  3N3U A;  5JJ6 A;  5JJ7 A;  2VY3 A;  5JFF A;  2NUN A;  5CMT A;  5JFZ A;  3CUC A;  4PY3 A;  3SE5 A;  4U0U A;  5CGL A;  1NH1 A;  3SN9 A;  4X2E A;  4N67 A;  4NPS A;  4WGJ A;  2NUD A;  4X2D A;  3S6A A;  3SHG A;  4U04 A;  4ITR A;  4M16 A; 
#chains in the Genus database with same CATH homology
 2NUN A;  1NH1 A;  2NUD A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2NUNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations