2RJIA

Malarial eba-175 region vi crystallographic structure reveals a kix-like binding interface
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
84
structure length
84
Chain Sequence
DDSTTKELIKKLAEINKCENEISAKYCDHMIHEEIPLKTCTKEKTRNLCCAVSDYCMSYFTYDSEEYYDCTKREFDDPSYTCFR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport, cell invasion
source organism Plasmodium falciparum
publication title Malarial EBA-175 Region VI Crystallographic Structure Reveals a KIX-Like Binding Interface
pubmed doi rcsb
molecule keywords Erythrocyte binding antigen 175
total genus 33
structure length 84
sequence length 84
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11556 EBA-175_VI Erythrocyte binding antigen 175
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1740.170 Mainly Alpha Orthogonal Bundle Rna Polymerase Sigma Factor; Chain: A Rna Polymerase Sigma Factor; Chain: A 2rjiA00
2RJIA
chains in the Genus database with same CATH superfamily
1H3LA 5AENA 4XMTA 3JT1A 4QHPA 1SG7A 1JGIA 3FTSA 4K5MA 4ZW6A 4GAEA 4XN2A 5JMPA 3B37A 4KP7A 3FUDA 3RC3A 2XPZA 3T8VA 2GTQA 2JD2A 5FWQA 4ZX4A 4LUPA 4AR1A 4QUOA 2C5ZA 1MW2A 2ZXGA 4RVBA 1ONOA 2PL5A 3B7RL 3B2PA 2WZGA 3EBIA 3FUKA 3CZKA 4AYSA 3FUNA 3FUFA 2MAOA 4K5PA 3WQRA 2JCYA 4XN8A 1SQMA 2R59A 4MKTA 1S46A 4Y6PA 2Y1DA 4ZW8A 3CHPA 3FUMA 3EBHA 4ZQGA 5DLLA 3VVMA 4XN5A 1X3WA 3CZEA 4XO4A 5JMWA 4AR9A 3RC8A 4ARFA 4XN1A 5JAZA 3CHRA 3VVLA 2FFLA 4JNDA 4X2UA 4ZQTA 3Q44A 1MVYA 3HW2A 1MW3A 3R0IA 4NQWA 2JD0A 4RCVA 5DYFA 2VJ8A 3JSZA 3Q43A 4ZX6A 5EV7A 3AU9A 4RSYA 3FUJA 4XN4A 2QVWA 4PU2A 4XN7A 2HPOA 1ZS2A 3B7UX 2JCXA 2C82A 3RASA 4ZW3A 3FH8A 2QJ1A 1ONPA 3FU6A 3UERA 4XNDA 4Q4EA 2Y1FA 1K5HA 1T1RA 4XMWA 4AR8A 3FH7A 4OOEA 3UEQA 4ZQHA 1T1SA 3CIAA 3FTXA 1Q0HA 1Q0QA 4A03A 4DPRA 1ONNA 1G5AA 3CHSA 3CZGA 1RP3A 2PGGA 3ANLA 4R5XA 2JV7A 3AUAA 4Y67A 2MAPA 3B2XA 3FU3A 2Y1GA 4OOFA 4XMZA 4ZX3A 3FUEA 4XO5A 4ZW5A 1MW0A 3B34A 2A7OA 3FU0A 2HPTA 4FLOA 3FUHA 4GAAA 4J3BA 4XNAA 4FLRA 4ZN6A 4PVBA 1GW6A 1R0KA 3FU5A 4Y6RA 3AU8A 2JD1A 3KEDA 3FULA 5BPPA 2Y1EA 5HNFA 4QIRA 5JBIA 2RJIA 3T0YA 5JNLA 3UCQA 1OR7A 1SC5A 2R70A 4FCAA 2WPGA 4BKXA 4ZQFA 2EGHA 2WZFA 4K5OA 3EBGA 2Y1CA 3ZI0A 2O7GA 1HS6A 4K5NA 5JO0A 4XMXA 4XNBA 2R72A 3CHQA 3IIEA 3ZHZA 2DQMA 4CXFA 3FH5A 3FTYA 3ANNA 3ZHXA 4XO3A 4Q4IA 2VLAA 3FUIA 5JC1A 3ANMA 3CXBA 4XMUA 5HNHA 2DQ6A 4K5LA 4QPEA 4PW4A 4Y6SA 4XMVA 4ZX5A 3FTWA 3FTVA 4R7LA 1JG9A 5DULA 3U9WA 3FTZA 1JVSA 4AICA 3A14A 3B7TA 1R0LA 4L2LA 1MW1A 2XQ0A 4ZW7A 3WQSB 4R5TA 2PUSA 2JCVA 3B7SA 3FTUA 3QJXA 4QMEA 3PUUA 3FHEA 1X3ZA 4MS6A 1Q0LA 1H19A 4FLSA 2XPYA 3WQQA 5HLTA 3A06A 4R5VA 3CHOA 3CZLA 4ZQEA 4FLQA 3ZHYA 3B3BA 4XN9A 2B61A
chains in the Genus database with same CATH topology
1H3LA 5AENA 4XMTA 3JT1A 4QHPA 1SG7A 1JGIA 3FTSA 4K5MA 4ZW6A 4GAEA 4XN2A 5JMPA 3B37A 4KP7A 3FUDA 3RC3A 2XPZA 3T8VA 2GTQA 2JD2A 5FWQA 4ZX4A 4LUPA 4AR1A 4QUOA 2C5ZA 1MW2A 2ZXGA 4RVBA 1ONOA 2PL5A 3B7RL 3B2PA 2WZGA 3EBIA 3FUKA 3CZKA 4AYSA 3FUNA 3FUFA 2MAOA 4K5PA 3WQRA 2JCYA 4XN8A 1SQMA 2R59A 4MKTA 1S46A 4Y6PA 2Y1DA 4ZW8A 3CHPA 3FUMA 3EBHA 4ZQGA 5DLLA 3VVMA 4XN5A 1X3WA 3CZEA 4XO4A 5JMWA 4AR9A 3RC8A 4ARFA 4XN1A 5JAZA 3CHRA 3VVLA 2FFLA 4JNDA 4X2UA 4ZQTA 3Q44A 1MVYA 1MW3A 3R0IA 4NQWA 2JD0A 4RCVA 5DYFA 2VJ8A 3JSZA 3Q43A 4ZX6A 5EV7A 3AU9A 4RSYA 3FUJA 4XN4A 2QVWA 4PU2A 4XN7A 2HPOA 1ZS2A 3B7UX 2JCXA 2C82A 3RASA 4ZW3A 3FH8A 2QJ1A 1ONPA 3FU6A 3UERA 4XNDA 4Q4EA 2Y1FA 1K5HA 1T1RA 4XMWA 4AR8A 3FH7A 4OOEA 3UEQA 4ZQHA 1T1SA 3CIAA 3FTXA 1Q0HA 1Q0QA 4A03A 4DPRA 1ONNA 1G5AA 3CHSA 3CZGA 1RP3A 2PGGA 3ANLA 4R5XA 2JV7A 3AUAA 4Y67A 2MAPA 3B2XA 3FU3A 2Y1GA 4OOFA 4XMZA 4ZX3A 3FUEA 4XO5A 4ZW5A 1MW0A 3B34A 2A7OA 3FU0A 2HPTA 4FLOA 3FUHA 4GAAA 4J3BA 4XNAA 4FLRA 4ZN6A 4PVBA 1GW6A 1R0KA 3FU5A 4Y6RA 3AU8A 2JD1A 3KEDA 3FULA 5BPPA 2Y1EA 5HNFA 4QIRA 5JBIA 2RJIA 3T0YA 5JNLA 3UCQA 1OR7A 1SC5A 2R70A 4FCAA 2WPGA 4BKXA 4ZQFA 2EGHA 2WZFA 4K5OA 3EBGA 2Y1CA 3ZI0A 2O7GA 1HS6A 4K5NA 5JO0A 4XMXA 4XNBA 2R72A 3CHQA 3IIEA 3ZHZA 2DQMA 4CXFA 3FH5A 3FTYA 3ANNA 3ZHXA 4XO3A 4Q4IA 2VLAA 3FUIA 5JC1A 3ANMA 4XMUA 5HNHA 2DQ6A 4K5LA 4QPEA 4PW4A 4Y6SA 4XMVA 4ZX5A 3FTWA 3FTVA 4R7LA 1JG9A 5DULA 3U9WA 3FTZA 1JVSA 4AICA 3A14A 3B7TA 1R0LA 4L2LA 1MW1A 2XQ0A 4ZW7A 3WQSB 4R5TA 2PUSA 2JCVA 3B7SA 3FTUA 3QJXA 4QMEA 3PUUA 3FHEA 1X3ZA 4MS6A 1Q0LA 1H19A 4FLSA 2XPYA 3WQQA 5HLTA 3A06A 4R5VA 3CHOA 3CZLA 4ZQEA 4FLQA 3ZHYA 3B3BA 4XN9A 2B61A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RJI A; 
#chains in the Genus database with same CATH topology
 1H3L A;  5AEN A;  4XMT A;  3JT1 A;  4QHP A;  1SG7 A;  1JGI A;  3FTS A;  4K5M A;  4ZW6 A;  4GAE A;  4XN2 A;  5JMP A;  3B37 A;  4KP7 A;  3FUD A;  3RC3 A;  2XPZ A;  3T8V A;  2GTQ A;  2JD2 A;  5FWQ A;  4ZX4 A;  4LUP A;  4AR1 A;  4QUO A;  2C5Z A;  1MW2 A;  2ZXG A;  4RVB A;  1ONO A;  2PL5 A;  3B7R L;  3B2P A;  2WZG A;  3EBI A;  3FUK A;  3CZK A;  4AYS A;  3FUN A;  3FUF A;  2MAO A;  4K5P A;  3WQR A;  2JCY A;  4XN8 A;  1SQM A;  2R59 A;  4MKT A;  1S46 A;  4Y6P A;  2Y1D A;  4ZW8 A;  3CHP A;  3FUM A;  3EBH A;  4ZQG A;  5DLL A;  3VVM A;  4XN5 A;  1X3W A;  3CZE A;  4XO4 A;  5JMW A;  4AR9 A;  3RC8 A;  4ARF A;  4XN1 A;  5JAZ A;  3CHR A;  3VVL A;  2FFL A;  4JND A;  4X2U A;  4ZQT A;  3Q44 A;  1MVY A;  3HW2 A;  1MW3 A;  3R0I A;  4NQW A;  2JD0 A;  4RCV A;  5DYF A;  2VJ8 A;  3JSZ A;  3Q43 A;  4ZX6 A;  5EV7 A;  3AU9 A;  4RSY A;  3FUJ A;  4XN4 A;  2QVW A;  4PU2 A;  4XN7 A;  2HPO A;  1ZS2 A;  3B7U X;  2JCX A;  2C82 A;  3RAS A;  4ZW3 A;  3FH8 A;  2QJ1 A;  1ONP A;  3FU6 A;  3UER A;  4XND A;  4Q4E A;  2Y1F A;  1K5H A;  1T1R A;  4XMW A;  4AR8 A;  3FH7 A;  4OOE A;  3UEQ A;  4ZQH A;  1T1S A;  3CIA A;  3FTX A;  1Q0H A;  1Q0Q A;  4A03 A;  4DPR A;  1ONN A;  1G5A A;  3CHS A;  3CZG A;  1RP3 A;  2PGG A;  3ANL A;  4R5X A;  2JV7 A;  3AUA A;  4Y67 A;  2MAP A;  3B2X A;  3FU3 A;  2Y1G A;  4OOF A;  4XMZ A;  4ZX3 A;  3FUE A;  4XO5 A;  4ZW5 A;  1MW0 A;  3B34 A;  2A7O A;  3FU0 A;  2HPT A;  4FLO A;  3FUH A;  4GAA A;  4J3B A;  4XNA A;  4FLR A;  4ZN6 A;  4PVB A;  1GW6 A;  1R0K A;  3FU5 A;  4Y6R A;  3AU8 A;  2JD1 A;  3KED A;  3FUL A;  5BPP A;  2Y1E A;  5HNF A;  4QIR A;  5JBI A;  2RJI A;  3T0Y A;  5JNL A;  3UCQ A;  1OR7 A;  1SC5 A;  2R70 A;  4FCA A;  2WPG A;  4BKX A;  4ZQF A;  2EGH A;  2WZF A;  4K5O A;  3EBG A;  2Y1C A;  3ZI0 A;  2O7G A;  1HS6 A;  4K5N A;  5JO0 A;  4XMX A;  4XNB A;  2R72 A;  3CHQ A;  3IIE A;  3ZHZ A;  2DQM A;  4CXF A;  3FH5 A;  3FTY A;  3ANN A;  3ZHX A;  4XO3 A;  4Q4I A;  2VLA A;  3FUI A;  5JC1 A;  3ANM A;  3CXB A;  4XMU A;  5HNH A;  2DQ6 A;  4K5L A;  4QPE A;  4PW4 A;  4Y6S A;  4XMV A;  4ZX5 A;  3FTW A;  3FTV A;  4R7L A;  1JG9 A;  5DUL A;  3U9W A;  3FTZ A;  1JVS A;  4AIC A;  3A14 A;  3B7T A;  1R0L A;  4L2L A;  1MW1 A;  2XQ0 A;  4ZW7 A;  3WQS B;  4R5T A;  2PUS A;  2JCV A;  3B7S A;  3FTU A;  3QJX A;  4QME A;  3PUU A;  3FHE A;  1X3Z A;  4MS6 A;  1Q0L A;  1H19 A;  4FLS A;  2XPY A;  3WQQ A;  5HLT A;  3A06 A;  4R5V A;  3CHO A;  3CZL A;  4ZQE A;  4FLQ A;  3ZHY A;  3B3B A;  4XN9 A;  2B61 A; 
#chains in the Genus database with same CATH homology
 1H3L A;  5AEN A;  4XMT A;  3JT1 A;  4QHP A;  1SG7 A;  1JGI A;  3FTS A;  4K5M A;  4ZW6 A;  4GAE A;  4XN2 A;  5JMP A;  3B37 A;  4KP7 A;  3FUD A;  3RC3 A;  2XPZ A;  3T8V A;  2GTQ A;  2JD2 A;  5FWQ A;  4ZX4 A;  4LUP A;  4AR1 A;  4QUO A;  2C5Z A;  1MW2 A;  2ZXG A;  4RVB A;  1ONO A;  2PL5 A;  3B7R L;  3B2P A;  2WZG A;  3EBI A;  3FUK A;  3CZK A;  4AYS A;  3FUN A;  3FUF A;  2MAO A;  4K5P A;  3WQR A;  2JCY A;  4XN8 A;  1SQM A;  2R59 A;  4MKT A;  1S46 A;  4Y6P A;  2Y1D A;  4ZW8 A;  3CHP A;  3FUM A;  3EBH A;  4ZQG A;  5DLL A;  3VVM A;  4XN5 A;  1X3W A;  3CZE A;  4XO4 A;  5JMW A;  4AR9 A;  3RC8 A;  4ARF A;  4XN1 A;  5JAZ A;  3CHR A;  3VVL A;  2FFL A;  4JND A;  4X2U A;  4ZQT A;  3Q44 A;  1MVY A;  1MW3 A;  3R0I A;  4NQW A;  2JD0 A;  4RCV A;  5DYF A;  2VJ8 A;  3JSZ A;  3Q43 A;  4ZX6 A;  5EV7 A;  3AU9 A;  4RSY A;  3FUJ A;  4XN4 A;  2QVW A;  4PU2 A;  4XN7 A;  2HPO A;  1ZS2 A;  3B7U X;  2JCX A;  2C82 A;  3RAS A;  4ZW3 A;  3FH8 A;  2QJ1 A;  1ONP A;  3FU6 A;  3UER A;  4XND A;  4Q4E A;  2Y1F A;  1K5H A;  1T1R A;  4XMW A;  4AR8 A;  3FH7 A;  4OOE A;  3UEQ A;  4ZQH A;  1T1S A;  3CIA A;  3FTX A;  1Q0H A;  1Q0Q A;  4A03 A;  4DPR A;  1ONN A;  1G5A A;  3CHS A;  3CZG A;  1RP3 A;  2PGG A;  3ANL A;  4R5X A;  2JV7 A;  3AUA A;  4Y67 A;  2MAP A;  3B2X A;  3FU3 A;  2Y1G A;  4OOF A;  4XMZ A;  4ZX3 A;  3FUE A;  4XO5 A;  4ZW5 A;  1MW0 A;  3B34 A;  2A7O A;  3FU0 A;  2HPT A;  4FLO A;  3FUH A;  4GAA A;  4J3B A;  4XNA A;  4FLR A;  4ZN6 A;  4PVB A;  1GW6 A;  1R0K A;  3FU5 A;  4Y6R A;  3AU8 A;  2JD1 A;  3KED A;  3FUL A;  5BPP A;  2Y1E A;  5HNF A;  4QIR A;  5JBI A;  2RJI A;  3T0Y A;  5JNL A;  3UCQ A;  1OR7 A;  1SC5 A;  2R70 A;  4FCA A;  2WPG A;  4BKX A;  4ZQF A;  2EGH A;  2WZF A;  4K5O A;  3EBG A;  2Y1C A;  3ZI0 A;  2O7G A;  1HS6 A;  4K5N A;  5JO0 A;  4XMX A;  4XNB A;  2R72 A;  3CHQ A;  3IIE A;  3ZHZ A;  2DQM A;  4CXF A;  3FH5 A;  3FTY A;  3ANN A;  3ZHX A;  4XO3 A;  4Q4I A;  2VLA A;  3FUI A;  5JC1 A;  3ANM A;  4XMU A;  5HNH A;  2DQ6 A;  4K5L A;  4QPE A;  4PW4 A;  4Y6S A;  4XMV A;  4ZX5 A;  3FTW A;  3FTV A;  4R7L A;  1JG9 A;  5DUL A;  3U9W A;  3FTZ A;  1JVS A;  4AIC A;  3A14 A;  3B7T A;  1R0L A;  4L2L A;  1MW1 A;  2XQ0 A;  4ZW7 A;  3WQS B;  4R5T A;  2PUS A;  2JCV A;  3B7S A;  3FTU A;  3QJX A;  4QME A;  3PUU A;  3FHE A;  1X3Z A;  4MS6 A;  1Q0L A;  1H19 A;  4FLS A;  2XPY A;  3WQQ A;  5HLT A;  3A06 A;  4R5V A;  3CHO A;  3CZL A;  4ZQE A;  4FLQ A;  3ZHY A;  3B3B A;  4XN9 A;  2B61 A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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