2RJIA

Malarial eba-175 region vi crystallographic structure reveals a kix-like binding interface
Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
84
structure length
84
Chain Sequence
DDSTTKELIKKLAEINKCENEISAKYCDHMIHEEIPLKTCTKEKTRNLCCAVSDYCMSYFTYDSEEYYDCTKREFDDPSYTCFR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (2-16)AH3 (42-59)AH4 (65-76)AH2 (21-34)O3 (40-82)TII1 (61-64)TI1 (77-80)TI2 (80-83)TIV1 (16-19)O1 (18-50)EMPTYUpdating...
connected with : NaN
molecule tags Protein transport, cell invasion
source organism Plasmodium falciparum
publication title Malarial EBA-175 Region VI Crystallographic Structure Reveals a KIX-Like Binding Interface
pubmed doi rcsb
molecule keywords Erythrocyte binding antigen 175
total genus 33
structure length 84
sequence length 84
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11556 EBA-175_VI Erythrocyte binding antigen 175
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1740.170 Mainly Alpha Orthogonal Bundle Rna Polymerase Sigma Factor; Chain: A Rna Polymerase Sigma Factor; Chain: A 2rjiA00
2RJIA
chains in the Genus database with same CATH superfamily
3CHSA 1R0KA 2JV7A 3Q43A 3FTZA 1S46A 4L2LA 2R59A 3CHRA 4ZQEA 3FUHA 5HLTA 3B37A 4K5OA 1Q0HA 1HS6A 3ZI0A 3B7RL 3FUNA 3AU8A 3ANMA 4PU2A 4Y6RA 5HNHA 3FTUA 3FULA 3RC8A 3ANLA 4Y67A 4Q4EA 4OOFA 3U9WA 4ZX4A 4PVBA 4NQWA 3FTWA 3VVMA 2JCVA 4QMEA 2Y1CA 3CZKA 3FUDA 4R5XA 3FUIA 4XO5A 4XNDA 4JNDA 3ZHXA 1JVSA 3FTVA 3FU3A 2O7GA 4X2UA 2FFLA 3CZGA 3VVLA 4ZW6A 2WPGA 1G5AA 4OOEA 2PGGA 4R5VA 4QUOA 3ANNA 4XN7A 3WQRA 3CHQA 3R0IA 4CXFA 2MAPA 5DULA 4A03A 1MW0A 3QJXA 1Q0LA 4RVBA 1K5HA 4ZX6A 4K5LA 3UCQA 4RSYA 3RASA 4QHPA 3JT1A 4ZW7A 3B34A 5EV7A 3AU9A 3CXBA 3CZLA 4QPEA 1X3WA 4FCAA 2DQ6A 1ZS2A 2WZGA 2RJIA 4ZQHA 2Y1FA 3UERA 3FH8A 1T1RA 3Q44A 4KP7A 4Y6PA 4XO4A 2XQ0A 2Y1DA 4R5TA 4XMWA 4XNBA 1RP3A 2DQMA 3B2XA 3CZEA 4FLOA 2A7OA 5FWQA 2XPZA 4XN8A 3FUEA 4AICA 5AENA 3FUMA 3FH5A 5DYFA 4ZQGA 3KEDA 5HNFA 2QJ1A 4AR1A 3WQQA 3FTYA 3IIEA 4FLSA 5JC1A 3FU5A 2JCXA 1GW6A 2XPYA 2C5ZA 1R0LA 3HW2A 4AYSA 5BPPA 3FUFA 3UEQA 2JD0A 3FU6A 2Y1GA 4XMUA 2JD2A 4GAEA 4XN5A 3WQSB 2PUSA 4XNAA 3FUKA 3B7SA 4ZN6A 4ZW3A 5JNLA 1X3ZA 4K5MA 4ZQFA 1ONNA 1SG7A 2C82A 4XO3A 3FHEA 2JCYA 3ZHZA 2B61A 1JG9A 1H19A 3FU0A 4K5PA 4XN1A 3EBIA 3CIAA 4XN2A 3B3BA 4XN4A 3CHOA 4MS6A 3B7UX 4XN9A 2Y1EA 2HPTA 3A06A 3AUAA 4Q4IA 1T1SA 3FH7A 3PUUA 4GAAA 3FTSA 4FLRA 4BKXA 5JMPA 3ZHYA 1H3LA 5JO0A 4Y6SA 1SC5A 1Q0QA 1SQMA 3FUJA 4AR9A 3FTXA 4XMXA 3T0YA 3A14A 2GTQA 4ZX5A 1ONOA 4ZW8A 4ZQTA 2VLAA 4PW4A 2VJ8A 4XMVA 2WZFA 1MW2A 3JSZA 1MW3A 4R7LA 4J3BA 2EGHA 2R70A 3B2PA 3CHPA 2MAOA 4QIRA 1ONPA 1JGIA 4ARFA 4XMTA 2QVWA 2ZXGA 2PL5A 3B7TA 4MKTA 4DPRA 4ZX3A 4RCVA 4LUPA 1MW1A 3EBGA 4XMZA 5JMWA 2HPOA 4K5NA 4AR8A 3T8VA 5JAZA 1OR7A 5JBIA 5DLLA 4ZW5A 3EBHA 3RC3A 2JD1A 4FLQA 2R72A 1MVYA
chains in the Genus database with same CATH topology
3CHSA 1R0KA 2JV7A 3Q43A 3FTZA 1S46A 4L2LA 2R59A 3CHRA 4ZQEA 3FUHA 5HLTA 3B37A 4K5OA 1Q0HA 1HS6A 3ZI0A 3B7RL 3FUNA 3AU8A 3ANMA 4PU2A 4Y6RA 5HNHA 3FTUA 3FULA 3RC8A 3ANLA 4Y67A 4Q4EA 4OOFA 3U9WA 4ZX4A 4PVBA 4NQWA 3FTWA 3VVMA 2JCVA 4QMEA 2Y1CA 3CZKA 3FUDA 4R5XA 3FUIA 4XO5A 4XNDA 4JNDA 3ZHXA 1JVSA 3FTVA 3FU3A 2O7GA 4X2UA 2FFLA 3CZGA 3VVLA 4ZW6A 2WPGA 1G5AA 4OOEA 2PGGA 4R5VA 4QUOA 3ANNA 4XN7A 3WQRA 3CHQA 3R0IA 4CXFA 2MAPA 5DULA 4A03A 1MW0A 3QJXA 1Q0LA 4RVBA 1K5HA 4ZX6A 4K5LA 3UCQA 4RSYA 3RASA 4QHPA 3JT1A 4ZW7A 3B34A 5EV7A 3AU9A 3CZLA 4QPEA 1X3WA 4FCAA 2DQ6A 1ZS2A 2WZGA 2RJIA 4ZQHA 2Y1FA 3UERA 3FH8A 1T1RA 3Q44A 4KP7A 4Y6PA 4XO4A 2XQ0A 2Y1DA 4R5TA 4XMWA 4XNBA 1RP3A 2DQMA 3B2XA 3CZEA 4FLOA 2A7OA 5FWQA 2XPZA 4XN8A 3FUEA 4AICA 5AENA 3FUMA 3FH5A 5DYFA 4ZQGA 3KEDA 5HNFA 2QJ1A 4AR1A 3WQQA 3FTYA 3IIEA 4FLSA 5JC1A 3FU5A 2JCXA 1GW6A 2XPYA 2C5ZA 1R0LA 4AYSA 5BPPA 3FUFA 3UEQA 2JD0A 3FU6A 2Y1GA 4XMUA 2JD2A 4GAEA 4XN5A 3WQSB 2PUSA 4XNAA 3FUKA 3B7SA 4ZN6A 4ZW3A 5JNLA 1X3ZA 4K5MA 4ZQFA 1ONNA 1SG7A 2C82A 4XO3A 3FHEA 2JCYA 3ZHZA 2B61A 1JG9A 1H19A 3FU0A 4K5PA 4XN1A 3EBIA 3CIAA 4XN2A 3B3BA 4XN4A 3CHOA 4MS6A 3B7UX 4XN9A 2Y1EA 2HPTA 3A06A 3AUAA 4Q4IA 1T1SA 3FH7A 3PUUA 4GAAA 3FTSA 4FLRA 4BKXA 5JMPA 3ZHYA 1H3LA 5JO0A 4Y6SA 1SC5A 1Q0QA 1SQMA 3FUJA 4AR9A 3FTXA 4XMXA 3T0YA 3A14A 2GTQA 4ZX5A 1ONOA 4ZW8A 4ZQTA 2VLAA 4PW4A 2VJ8A 4XMVA 2WZFA 1MW2A 3JSZA 1MW3A 4R7LA 4J3BA 2EGHA 2R70A 3B2PA 3CHPA 2MAOA 4QIRA 1ONPA 1JGIA 4ARFA 4XMTA 2QVWA 2ZXGA 2PL5A 3B7TA 4MKTA 4DPRA 4ZX3A 4RCVA 4LUPA 1MW1A 3EBGA 4XMZA 5JMWA 2HPOA 4K5NA 4AR8A 3T8VA 5JAZA 1OR7A 5JBIA 5DLLA 4ZW5A 3EBHA 3RC3A 2JD1A 4FLQA 2R72A 1MVYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RJI A; 
#chains in the Genus database with same CATH topology
 3CHS A;  1R0K A;  2JV7 A;  3Q43 A;  3FTZ A;  1S46 A;  4L2L A;  2R59 A;  3CHR A;  4ZQE A;  3FUH A;  5HLT A;  3B37 A;  4K5O A;  1Q0H A;  1HS6 A;  3ZI0 A;  3B7R L;  3FUN A;  3AU8 A;  3ANM A;  4PU2 A;  4Y6R A;  5HNH A;  3FTU A;  3FUL A;  3RC8 A;  3ANL A;  4Y67 A;  4Q4E A;  4OOF A;  3U9W A;  4ZX4 A;  4PVB A;  4NQW A;  3FTW A;  3VVM A;  2JCV A;  4QME A;  2Y1C A;  3CZK A;  3FUD A;  4R5X A;  3FUI A;  4XO5 A;  4XND A;  4JND A;  3ZHX A;  1JVS A;  3FTV A;  3FU3 A;  2O7G A;  4X2U A;  2FFL A;  3CZG A;  3VVL A;  4ZW6 A;  2WPG A;  1G5A A;  4OOE A;  2PGG A;  4R5V A;  4QUO A;  3ANN A;  4XN7 A;  3WQR A;  3CHQ A;  3R0I A;  4CXF A;  2MAP A;  5DUL A;  4A03 A;  1MW0 A;  3QJX A;  1Q0L A;  4RVB A;  1K5H A;  4ZX6 A;  4K5L A;  3UCQ A;  4RSY A;  3RAS A;  4QHP A;  3JT1 A;  4ZW7 A;  3B34 A;  5EV7 A;  3AU9 A;  3CXB A;  3CZL A;  4QPE A;  1X3W A;  4FCA A;  2DQ6 A;  1ZS2 A;  2WZG A;  2RJI A;  4ZQH A;  2Y1F A;  3UER A;  3FH8 A;  1T1R A;  3Q44 A;  4KP7 A;  4Y6P A;  4XO4 A;  2XQ0 A;  2Y1D A;  4R5T A;  4XMW A;  4XNB A;  1RP3 A;  2DQM A;  3B2X A;  3CZE A;  4FLO A;  2A7O A;  5FWQ A;  2XPZ A;  4XN8 A;  3FUE A;  4AIC A;  5AEN A;  3FUM A;  3FH5 A;  5DYF A;  4ZQG A;  3KED A;  5HNF A;  2QJ1 A;  4AR1 A;  3WQQ A;  3FTY A;  3IIE A;  4FLS A;  5JC1 A;  3FU5 A;  2JCX A;  1GW6 A;  2XPY A;  2C5Z A;  1R0L A;  3HW2 A;  4AYS A;  5BPP A;  3FUF A;  3UEQ A;  2JD0 A;  3FU6 A;  2Y1G A;  4XMU A;  2JD2 A;  4GAE A;  4XN5 A;  3WQS B;  2PUS A;  4XNA A;  3FUK A;  3B7S A;  4ZN6 A;  4ZW3 A;  5JNL A;  1X3Z A;  4K5M A;  4ZQF A;  1ONN A;  1SG7 A;  2C82 A;  4XO3 A;  3FHE A;  2JCY A;  3ZHZ A;  2B61 A;  1JG9 A;  1H19 A;  3FU0 A;  4K5P A;  4XN1 A;  3EBI A;  3CIA A;  4XN2 A;  3B3B A;  4XN4 A;  3CHO A;  4MS6 A;  3B7U X;  4XN9 A;  2Y1E A;  2HPT A;  3A06 A;  3AUA A;  4Q4I A;  1T1S A;  3FH7 A;  3PUU A;  4GAA A;  3FTS A;  4FLR A;  4BKX A;  5JMP A;  3ZHY A;  1H3L A;  5JO0 A;  4Y6S A;  1SC5 A;  1Q0Q A;  1SQM A;  3FUJ A;  4AR9 A;  3FTX A;  4XMX A;  3T0Y A;  3A14 A;  2GTQ A;  4ZX5 A;  1ONO A;  4ZW8 A;  4ZQT A;  2VLA A;  4PW4 A;  2VJ8 A;  4XMV A;  2WZF A;  1MW2 A;  3JSZ A;  1MW3 A;  4R7L A;  4J3B A;  2EGH A;  2R70 A;  3B2P A;  3CHP A;  2MAO A;  4QIR A;  1ONP A;  1JGI A;  4ARF A;  4XMT A;  2QVW A;  2ZXG A;  2PL5 A;  3B7T A;  4MKT A;  4DPR A;  4ZX3 A;  4RCV A;  4LUP A;  1MW1 A;  3EBG A;  4XMZ A;  5JMW A;  2HPO A;  4K5N A;  4AR8 A;  3T8V A;  5JAZ A;  1OR7 A;  5JBI A;  5DLL A;  4ZW5 A;  3EBH A;  3RC3 A;  2JD1 A;  4FLQ A;  2R72 A;  1MVY A; 
#chains in the Genus database with same CATH homology
 3CHS A;  1R0K A;  2JV7 A;  3Q43 A;  3FTZ A;  1S46 A;  4L2L A;  2R59 A;  3CHR A;  4ZQE A;  3FUH A;  5HLT A;  3B37 A;  4K5O A;  1Q0H A;  1HS6 A;  3ZI0 A;  3B7R L;  3FUN A;  3AU8 A;  3ANM A;  4PU2 A;  4Y6R A;  5HNH A;  3FTU A;  3FUL A;  3RC8 A;  3ANL A;  4Y67 A;  4Q4E A;  4OOF A;  3U9W A;  4ZX4 A;  4PVB A;  4NQW A;  3FTW A;  3VVM A;  2JCV A;  4QME A;  2Y1C A;  3CZK A;  3FUD A;  4R5X A;  3FUI A;  4XO5 A;  4XND A;  4JND A;  3ZHX A;  1JVS A;  3FTV A;  3FU3 A;  2O7G A;  4X2U A;  2FFL A;  3CZG A;  3VVL A;  4ZW6 A;  2WPG A;  1G5A A;  4OOE A;  2PGG A;  4R5V A;  4QUO A;  3ANN A;  4XN7 A;  3WQR A;  3CHQ A;  3R0I A;  4CXF A;  2MAP A;  5DUL A;  4A03 A;  1MW0 A;  3QJX A;  1Q0L A;  4RVB A;  1K5H A;  4ZX6 A;  4K5L A;  3UCQ A;  4RSY A;  3RAS A;  4QHP A;  3JT1 A;  4ZW7 A;  3B34 A;  5EV7 A;  3AU9 A;  3CZL A;  4QPE A;  1X3W A;  4FCA A;  2DQ6 A;  1ZS2 A;  2WZG A;  2RJI A;  4ZQH A;  2Y1F A;  3UER A;  3FH8 A;  1T1R A;  3Q44 A;  4KP7 A;  4Y6P A;  4XO4 A;  2XQ0 A;  2Y1D A;  4R5T A;  4XMW A;  4XNB A;  1RP3 A;  2DQM A;  3B2X A;  3CZE A;  4FLO A;  2A7O A;  5FWQ A;  2XPZ A;  4XN8 A;  3FUE A;  4AIC A;  5AEN A;  3FUM A;  3FH5 A;  5DYF A;  4ZQG A;  3KED A;  5HNF A;  2QJ1 A;  4AR1 A;  3WQQ A;  3FTY A;  3IIE A;  4FLS A;  5JC1 A;  3FU5 A;  2JCX A;  1GW6 A;  2XPY A;  2C5Z A;  1R0L A;  4AYS A;  5BPP A;  3FUF A;  3UEQ A;  2JD0 A;  3FU6 A;  2Y1G A;  4XMU A;  2JD2 A;  4GAE A;  4XN5 A;  3WQS B;  2PUS A;  4XNA A;  3FUK A;  3B7S A;  4ZN6 A;  4ZW3 A;  5JNL A;  1X3Z A;  4K5M A;  4ZQF A;  1ONN A;  1SG7 A;  2C82 A;  4XO3 A;  3FHE A;  2JCY A;  3ZHZ A;  2B61 A;  1JG9 A;  1H19 A;  3FU0 A;  4K5P A;  4XN1 A;  3EBI A;  3CIA A;  4XN2 A;  3B3B A;  4XN4 A;  3CHO A;  4MS6 A;  3B7U X;  4XN9 A;  2Y1E A;  2HPT A;  3A06 A;  3AUA A;  4Q4I A;  1T1S A;  3FH7 A;  3PUU A;  4GAA A;  3FTS A;  4FLR A;  4BKX A;  5JMP A;  3ZHY A;  1H3L A;  5JO0 A;  4Y6S A;  1SC5 A;  1Q0Q A;  1SQM A;  3FUJ A;  4AR9 A;  3FTX A;  4XMX A;  3T0Y A;  3A14 A;  2GTQ A;  4ZX5 A;  1ONO A;  4ZW8 A;  4ZQT A;  2VLA A;  4PW4 A;  2VJ8 A;  4XMV A;  2WZF A;  1MW2 A;  3JSZ A;  1MW3 A;  4R7L A;  4J3B A;  2EGH A;  2R70 A;  3B2P A;  3CHP A;  2MAO A;  4QIR A;  1ONP A;  1JGI A;  4ARF A;  4XMT A;  2QVW A;  2ZXG A;  2PL5 A;  3B7T A;  4MKT A;  4DPR A;  4ZX3 A;  4RCV A;  4LUP A;  1MW1 A;  3EBG A;  4XMZ A;  5JMW A;  2HPO A;  4K5N A;  4AR8 A;  3T8V A;  5JAZ A;  1OR7 A;  5JBI A;  5DLL A;  4ZW5 A;  3EBH A;  3RC3 A;  2JD1 A;  4FLQ A;  2R72 A;  1MVY A; 
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