3CUC | Genus

Total Genus 90

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	90
sequence length	279
structure length	262
Chain Sequence	SNIKQLYSKWKSLQPLKPEDLKRWNDKFKLEFNYNSNHLEGNTLTYGQTKLLLMFGETSGNASLKDYEEMKAHNVGLEMIKQEAQDKERPLTESFIRELNRTILVQDYWKVGEYKSRPNSVLTGEVFSYASPEETPAFMTSLVDWYNLEADKGILTPVELAALLHYRYIRIHPFEDGNGRIARLLVNFVLHRYGYPMIVIHSEDKSNYLNILHQCDVEAGLTPSDGANATLNDILPFVNYLSSCLIRSLTLAIKAAKGESIE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 262 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
source organism	Bacteroides thetaiotaomicron vpi-5482
publication title	Crystal structure of Protein of Unknown Function with a Fic Domain (NP_811426.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.71 A resolution rcsb
molecule keywords	Protein of unknown function with a Fic domain
total genus	90
structure length	262
sequence length	279
chains with identical sequence	B
ec nomenclature
pdb deposition date	2008-04-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02661	Fic	Fic/DOC family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.10	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fido-like domain	3cucA00

4XI8A 4U0SA 4U04A 3CUCA 4U0UA 2JK8A 4PY3A 3SE5A 5CMTA 4X2DA 5JJ7A 3ZC7A 4M16A 5EU0A 5JFFA 4U0ZA 4NPSA 5JJ6A 3N3UA 2G03A 2VZAA 3ZLMA 4U07A 3SN9A 2VY3A 4ITRA 3S6AA 5CKLA 4LU4A 4WGJA 2F6SA 5CGLA 5JFZA 4X2CA 3LETA 3ZCBA 4N67A 4X2EA 3SHGA
chains in the Genus database with same CATH superfamily

4XI8A 4U0SA 4U04A 2NUDA 3CUCA 4U0UA 2JK8A 4PY3A 3SE5A 5CMTA 4X2DA 5JJ7A 3ZC7A 4M16A 5EU0A 5JFFA 4U0ZA 4NPSA 5JJ6A 3N3UA 2G03A 2VZAA 3ZLMA 4U07A 3SN9A 2VY3A 2NUNA 4ITRA 3S6AA 5CKLA 4LU4A 4WGJA 2F6SA 5CGLA 5JFZA 1NH1A 4X2CA 3LETA 3ZCBA 4N67A 4X2EA 3SHGA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4XI8 A;  4U0S A;  4U04 A;  3CUC A;  4U0U A;  2JK8 A;  4PY3 A;  3SE5 A;  5CMT A;  4X2D A;  5JJ7 A;  3ZC7 A;  4M16 A;  5EU0 A;  5JFF A;  4U0Z A;  4NPS A;  5JJ6 A;  3N3U A;  2G03 A;  2VZA A;  3ZLM A;  4U07 A;  3SN9 A;  2VY3 A;  4ITR A;  3S6A A;  5CKL A;  4LU4 A;  4WGJ A;  2F6S A;  5CGL A;  5JFZ A;  4X2C A;  3LET A;  3ZCB A;  4N67 A;  4X2E A;  3SHG A; 
#chains in the Genus database with same CATH topology
 4XI8 A;  4U0S A;  4U04 A;  2NUD A;  3CUC A;  4U0U A;  2JK8 A;  4PY3 A;  3SE5 A;  5CMT A;  4X2D A;  5JJ7 A;  3ZC7 A;  4M16 A;  5EU0 A;  5JFF A;  4U0Z A;  4NPS A;  5JJ6 A;  3N3U A;  2G03 A;  2VZA A;  3ZLM A;  4U07 A;  3SN9 A;  2VY3 A;  2NUN A;  4ITR A;  3S6A A;  5CKL A;  4LU4 A;  4WGJ A;  2F6S A;  5CGL A;  5JFZ A;  1NH1 A;  4X2C A;  3LET A;  3ZCB A;  4N67 A;  4X2E A;  3SHG A; 
#chains in the Genus database with same CATH homology
 4XI8 A;  4U0S A;  4U04 A;  3CUC A;  4U0U A;  2JK8 A;  4PY3 A;  3SE5 A;  5CMT A;  4X2D A;  5JJ7 A;  3ZC7 A;  4M16 A;  5EU0 A;  5JFF A;  4U0Z A;  4NPS A;  5JJ6 A;  3N3U A;  2G03 A;  2VZA A;  3ZLM A;  4U07 A;  3SN9 A;  2VY3 A;  4ITR A;  3S6A A;  5CKL A;  4LU4 A;  4WGJ A;  2F6S A;  5CGL A;  5JFZ A;  4X2C A;  3LET A;  3ZCB A;  4N67 A;  4X2E A;  3SHG A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3CUCA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations