3N3U | Genus

Total Genus 108

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	108
sequence length	296
structure length	291
Chain Sequence	VNYQDLEDNLNLKGLISLEDDRNANFESNVLKNEKFLDEAREISKKSIPEATVKQMSHLPEFDDILTEGAKKVESRINKAITFRPSVEEFSEIQDLVKTLPKTKVIEDLSTKTNEITEALAATSKTIQRTPELKEQLKTAIEDFLQNSQGKPLTVQMIENLNHGLRPDEGEGRLLYKKENAVFSSPEAAKIQLAETVDFINRAKNEGIEPSVVGALVYQRLIAYHPFAEGNGRMARVIVNKILLDAGYPAFTKFSDEFEPQIIPQTKASTKSATSSEVVVEFLKELAKKGS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 291 atoms

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291 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Histophilus somni
publication title	Structural basis of Fic-mediated adenylylation. pubmed doi rcsb
molecule keywords	Adenosine monophosphate-protein transferase ibpA
total genus	108
structure length	291
sequence length	296
ec nomenclature	ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date	2010-05-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02661	Fic	Fic/DOC family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.10	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fido-like domain	3n3uA00

5JFZA 3CUCA 2VY3A 4WGJA 3ZC7A 2VZAA 4NPSA 3ZCBA 2G03A 2JK8A 5EU0A 3S6AA 3SN9A 5JFFA 4ITRA 4U07A 5CMTA 4U0SA 5JJ6A 4N67A 2F6SA 4X2EA 4U0UA 3ZLMA 4LU4A 4XI8A 5JJ7A 4PY3A 5CKLA 4X2DA 3SE5A 4U04A 3LETA 4U0ZA 5CGLA 3N3UA 4M16A 4X2CA 3SHGA
chains in the Genus database with same CATH superfamily

5JFZA 3CUCA 2VY3A 4WGJA 3ZC7A 2VZAA 4NPSA 3ZCBA 2G03A 2JK8A 2NUNA 5EU0A 3S6AA 3SN9A 5JFFA 4ITRA 4U07A 5CMTA 4U0SA 5JJ6A 4N67A 2F6SA 4X2EA 4U0UA 3ZLMA 4LU4A 4XI8A 5JJ7A 4PY3A 5CKLA 4X2DA 3SE5A 4U04A 1NH1A 3LETA 2NUDA 4U0ZA 5CGLA 3N3UA 4M16A 4X2CA 3SHGA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5JFZ A;  3CUC A;  2VY3 A;  4WGJ A;  3ZC7 A;  2VZA A;  4NPS A;  3ZCB A;  2G03 A;  2JK8 A;  5EU0 A;  3S6A A;  3SN9 A;  5JFF A;  4ITR A;  4U07 A;  5CMT A;  4U0S A;  5JJ6 A;  4N67 A;  2F6S A;  4X2E A;  4U0U A;  3ZLM A;  4LU4 A;  4XI8 A;  5JJ7 A;  4PY3 A;  5CKL A;  4X2D A;  3SE5 A;  4U04 A;  3LET A;  4U0Z A;  5CGL A;  3N3U A;  4M16 A;  4X2C A;  3SHG A; 
#chains in the Genus database with same CATH topology
 5JFZ A;  3CUC A;  2VY3 A;  4WGJ A;  3ZC7 A;  2VZA A;  4NPS A;  3ZCB A;  2G03 A;  2JK8 A;  2NUN A;  5EU0 A;  3S6A A;  3SN9 A;  5JFF A;  4ITR A;  4U07 A;  5CMT A;  4U0S A;  5JJ6 A;  4N67 A;  2F6S A;  4X2E A;  4U0U A;  3ZLM A;  4LU4 A;  4XI8 A;  5JJ7 A;  4PY3 A;  5CKL A;  4X2D A;  3SE5 A;  4U04 A;  1NH1 A;  3LET A;  2NUD A;  4U0Z A;  5CGL A;  3N3U A;  4M16 A;  4X2C A;  3SHG A; 
#chains in the Genus database with same CATH homology
 5JFZ A;  3CUC A;  2VY3 A;  4WGJ A;  3ZC7 A;  2VZA A;  4NPS A;  3ZCB A;  2G03 A;  2JK8 A;  5EU0 A;  3S6A A;  3SN9 A;  5JFF A;  4ITR A;  4U07 A;  5CMT A;  4U0S A;  5JJ6 A;  4N67 A;  2F6S A;  4X2E A;  4U0U A;  3ZLM A;  4LU4 A;  4XI8 A;  5JJ7 A;  4PY3 A;  5CKL A;  4X2D A;  3SE5 A;  4U04 A;  3LET A;  4U0Z A;  5CGL A;  3N3U A;  4M16 A;  4X2C A;  3SHG A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3N3UA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations