3SE5 | Genus

Total Genus 60

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	60
sequence length	155
structure length	155
Chain Sequence	SIDEQSLHNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDFAGQIREDNISKGGFRFANAMYLKEALVKIEQMPERTFEEIIAKYVEMNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLELRFLLKDNLTD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 155 atoms

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155 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Neisseria meningitidis
publication title	Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins. pubmed doi rcsb
molecule keywords	Cell filamentation protein Fic-related protein
total genus	60
structure length	155
sequence length	155
chains with identical sequence	B, C, D
ec nomenclature	ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date	2011-06-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02661	Fic	Fic/DOC family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.10	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fido-like domain	3se5A00

2JK8A 5JFZA 3SE5A 3ZCBA 5JJ6A 4U0UA 2VZAA 5JJ7A 4X2EA 4ITRA 5JFFA 4M16A 3SN9A 3S6AA 3SHGA 4U0ZA 4U07A 5CMTA 4WGJA 3ZC7A 4LU4A 4X2DA 4N67A 3LETA 3ZLMA 5CKLA 4NPSA 5CGLA 2G03A 4PY3A 5EU0A 4X2CA 4XI8A 3N3UA 4U04A 2VY3A 2F6SA 4U0SA 3CUCA
chains in the Genus database with same CATH superfamily

2JK8A 5JFZA 3SE5A 3ZCBA 2NUDA 5JJ6A 4U0UA 2VZAA 5JJ7A 4X2EA 4ITRA 5JFFA 4M16A 3SN9A 3S6AA 3SHGA 4U0ZA 2NUNA 4U07A 5CMTA 4WGJA 3ZC7A 4LU4A 4X2DA 4N67A 4U0SA 3LETA 3ZLMA 5CKLA 4NPSA 5CGLA 2G03A 4PY3A 5EU0A 4X2CA 4XI8A 3N3UA 4U04A 2VY3A 2F6SA 1NH1A 3CUCA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2JK8 A;  5JFZ A;  3SE5 A;  3ZCB A;  5JJ6 A;  4U0U A;  2VZA A;  5JJ7 A;  4X2E A;  4ITR A;  5JFF A;  4M16 A;  3SN9 A;  3S6A A;  3SHG A;  4U0Z A;  4U07 A;  5CMT A;  4WGJ A;  3ZC7 A;  4LU4 A;  4X2D A;  4N67 A;  3LET A;  3ZLM A;  5CKL A;  4NPS A;  5CGL A;  2G03 A;  4PY3 A;  5EU0 A;  4X2C A;  4XI8 A;  3N3U A;  4U04 A;  2VY3 A;  2F6S A;  4U0S A;  3CUC A; 
#chains in the Genus database with same CATH topology
 2JK8 A;  5JFZ A;  3SE5 A;  3ZCB A;  2NUD A;  5JJ6 A;  4U0U A;  2VZA A;  5JJ7 A;  4X2E A;  4ITR A;  5JFF A;  4M16 A;  3SN9 A;  3S6A A;  3SHG A;  4U0Z A;  2NUN A;  4U07 A;  5CMT A;  4WGJ A;  3ZC7 A;  4LU4 A;  4X2D A;  4N67 A;  4U0S A;  3LET A;  3ZLM A;  5CKL A;  4NPS A;  5CGL A;  2G03 A;  4PY3 A;  5EU0 A;  4X2C A;  4XI8 A;  3N3U A;  4U04 A;  2VY3 A;  2F6S A;  1NH1 A;  3CUC A; 
#chains in the Genus database with same CATH homology
 2JK8 A;  5JFZ A;  3SE5 A;  3ZCB A;  5JJ6 A;  4U0U A;  2VZA A;  5JJ7 A;  4X2E A;  4ITR A;  5JFF A;  4M16 A;  3SN9 A;  3S6A A;  3SHG A;  4U0Z A;  4U07 A;  5CMT A;  4WGJ A;  3ZC7 A;  4LU4 A;  4X2D A;  4N67 A;  3LET A;  3ZLM A;  5CKL A;  4NPS A;  5CGL A;  2G03 A;  4PY3 A;  5EU0 A;  4X2C A;  4XI8 A;  3N3U A;  4U04 A;  2VY3 A;  2F6S A;  4U0S A;  3CUC A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3SE5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations