3SHG | Genus

Total Genus 75

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	75
sequence length	198
structure length	198
Chain Sequence	VRKYEGSNDPYTDPETGVMYNLLGIKDQARLERVESAFAYIRSFELGRTSISGKFDLDHMKKIHKKLFGDVYEWAGKTRLVDIVKDNSKFAHYTQIESYAPQITQQLAREQHLRGLDANEFSQRAGYYMGELNALHPFREGNGRTLREFIWQLAREAGYHIDWDRVERQEMTRASIESYYGNSDLMSALIRRNLTEFT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase/protein binding
source organism	Bartonella schoenbuchensis r1
publication title	Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins. pubmed doi rcsb
molecule keywords	VbhT
total genus	75
structure length	198
sequence length	198
ec nomenclature	ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date	2011-06-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02661	Fic	Fic/DOC family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.10	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fido-like domain	3shgA00

4X2DA 4ITRA 4WGJA 4X2CA 3S6AA 3ZCBA 3N3UA 3SN9A 5CKLA 4PY3A 2VZAA 2F6SA 4U07A 5JFZA 3CUCA 5JJ6A 4U0ZA 5JFFA 2VY3A 4U04A 5CMTA 4XI8A 3ZLMA 3LETA 4U0SA 4NPSA 3ZC7A 5CGLA 2JK8A 4U0UA 4N67A 4M16A 4LU4A 4X2EA 3SE5A 3SHGA 5JJ7A 2G03A 5EU0A
chains in the Genus database with same CATH superfamily

4X2DA 4ITRA 4WGJA 4X2CA 3S6AA 3ZCBA 1NH1A 3N3UA 3SN9A 4PY3A 5CKLA 2NUDA 2VZAA 2F6SA 4U07A 5JFZA 3CUCA 5JJ6A 4U0ZA 5JFFA 2VY3A 4U04A 5CMTA 4XI8A 3ZLMA 3LETA 4U0SA 4NPSA 3ZC7A 2NUNA 5CGLA 2JK8A 4U0UA 4N67A 4M16A 4LU4A 4X2EA 3SE5A 3SHGA 5JJ7A 2G03A 5EU0A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4X2D A;  4ITR A;  4WGJ A;  4X2C A;  3S6A A;  3ZCB A;  3N3U A;  3SN9 A;  5CKL A;  4PY3 A;  2VZA A;  2F6S A;  4U07 A;  5JFZ A;  3CUC A;  5JJ6 A;  4U0Z A;  5JFF A;  2VY3 A;  4U04 A;  5CMT A;  4XI8 A;  3ZLM A;  3LET A;  4U0S A;  4NPS A;  3ZC7 A;  5CGL A;  2JK8 A;  4U0U A;  4N67 A;  4M16 A;  4LU4 A;  4X2E A;  3SE5 A;  3SHG A;  5JJ7 A;  2G03 A;  5EU0 A; 
#chains in the Genus database with same CATH topology
 4X2D A;  4ITR A;  4WGJ A;  4X2C A;  3S6A A;  3ZCB A;  1NH1 A;  3N3U A;  3SN9 A;  4PY3 A;  5CKL A;  2NUD A;  2VZA A;  2F6S A;  4U07 A;  5JFZ A;  3CUC A;  5JJ6 A;  4U0Z A;  5JFF A;  2VY3 A;  4U04 A;  5CMT A;  4XI8 A;  3ZLM A;  3LET A;  4U0S A;  4NPS A;  3ZC7 A;  2NUN A;  5CGL A;  2JK8 A;  4U0U A;  4N67 A;  4M16 A;  4LU4 A;  4X2E A;  3SE5 A;  3SHG A;  5JJ7 A;  2G03 A;  5EU0 A; 
#chains in the Genus database with same CATH homology
 4X2D A;  4ITR A;  4WGJ A;  4X2C A;  3S6A A;  3ZCB A;  3N3U A;  3SN9 A;  5CKL A;  4PY3 A;  2VZA A;  2F6S A;  4U07 A;  5JFZ A;  3CUC A;  5JJ6 A;  4U0Z A;  5JFF A;  2VY3 A;  4U04 A;  5CMT A;  4XI8 A;  3ZLM A;  3LET A;  4U0S A;  4NPS A;  3ZC7 A;  5CGL A;  2JK8 A;  4U0U A;  4N67 A;  4M16 A;  4LU4 A;  4X2E A;  3SE5 A;  3SHG A;  5JJ7 A;  2G03 A;  5EU0 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3SHGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations