3ZCBA

Vbht fic protein from bartonella schoenbuchensis in complex with vbha antitoxin mutant e24g and atp
Total Genus 71
20406080100120140160180010203040506070
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
189
structure length
185
Chain Sequence
DPYTDPETGVMYNLLGIKDQARLERVESAFAYIRSFELGRTSISGKFDLDHMKKIHKKLFGDVYEWAGKTRLVDISKFAHYTQIESYAPQITQQLAREQHLRGLDANEFSQRAGYYMGELNALHPFREGNGRTLREFIWQLAREAGYHIDWDRVERQEMTRASIESYYGNSDLMSALIRRNLTEF
2040608010012014016018015010050
010203040506070Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (12-13)TI1 (9-12)TI2 (13-16)TI3 (14-17)AH2 (57-69)AH1 (28-48)TI4 (21-24)TIV2 (138-141)AH3 (96-110)TI5 (69-72)TI6 (72-75)TII1 (74-77)3H1 (93-95)TIV1 (83-90)TII2 (113-116)AH5 (142-157)3H2 (111-113)AH6 (168-180)TI8 (163-166)S2 (18-19)AH4 (118-135)AH7 (183-193)TI7 (162-165)S3 (159-161)Updating...
connected with : NaN
molecule tags Transferase/antitoxin
source organism Bartonella schoenbuchensis
publication title Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold.
pubmed doi rcsb
molecule keywords ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE VBHT
total genus 71
structure length 185
sequence length 189
ec nomenclature ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date 2012-11-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 3zcbA00
4X2DA 3CUCA 3LETA 4N67A 4X2CA 3S6AA 4U0SA 4WGJA 5JFZA 4ITRA 4U0ZA 2VY3A 3ZLMA 4NPSA 3ZCBA 4X2EA 3SN9A 4PY3A 3N3UA 3ZC7A 5JJ6A 4XI8A 5EU0A 3SE5A 5CMTA 5CGLA 4U04A 4U07A 5JJ7A 2G03A 3SHGA 2F6SA 2JK8A 2VZAA 4M16A 4U0UA 5CKLA 5JFFA 4LU4A
chains in the Genus database with same CATH superfamily
4X2DA 3CUCA 3LETA 4N67A 4X2CA 3S6AA 4U0SA 4WGJA 1NH1A 2NUDA 5JFZA 4ITRA 4U0ZA 2VY3A 3ZLMA 4NPSA 3ZCBA 4X2EA 3SN9A 4PY3A 3N3UA 3ZC7A 5JJ6A 4XI8A 5EU0A 3SE5A 5CMTA 5CGLA 2NUNA 4U04A 4U07A 5JJ7A 2G03A 3SHGA 2F6SA 2JK8A 2VZAA 4M16A 4U0UA 5CKLA 5JFFA 4LU4A
chains in the Genus database with same CATH topology
4X2DA 3CUCA 3LETA 4N67A 4X2CA 3S6AA 4U0SA 4WGJA 5JFZA 4ITRA 4U0ZA 2VY3A 3ZLMA 4NPSA 3ZCBA 4X2EA 3SN9A 4PY3A 3N3UA 3ZC7A 5JJ6A 4XI8A 5EU0A 3SE5A 5CMTA 5CGLA 4U04A 4U07A 5JJ7A 2G03A 3SHGA 2F6SA 2JK8A 2VZAA 4M16A 4U0UA 5CKLA 5JFFA 4LU4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4X2D A;  3CUC A;  3LET A;  4N67 A;  4X2C A;  3S6A A;  4U0S A;  4WGJ A;  5JFZ A;  4ITR A;  4U0Z A;  2VY3 A;  3ZLM A;  4NPS A;  3ZCB A;  4X2E A;  3SN9 A;  4PY3 A;  3N3U A;  3ZC7 A;  5JJ6 A;  4XI8 A;  5EU0 A;  3SE5 A;  5CMT A;  5CGL A;  4U04 A;  4U07 A;  5JJ7 A;  2G03 A;  3SHG A;  2F6S A;  2JK8 A;  2VZA A;  4M16 A;  4U0U A;  5CKL A;  5JFF A;  4LU4 A; 
#chains in the Genus database with same CATH topology
 4X2D A;  3CUC A;  3LET A;  4N67 A;  4X2C A;  3S6A A;  4U0S A;  4WGJ A;  1NH1 A;  2NUD A;  5JFZ A;  4ITR A;  4U0Z A;  2VY3 A;  3ZLM A;  4NPS A;  3ZCB A;  4X2E A;  3SN9 A;  4PY3 A;  3N3U A;  3ZC7 A;  5JJ6 A;  4XI8 A;  5EU0 A;  3SE5 A;  5CMT A;  5CGL A;  2NUN A;  4U04 A;  4U07 A;  5JJ7 A;  2G03 A;  3SHG A;  2F6S A;  2JK8 A;  2VZA A;  4M16 A;  4U0U A;  5CKL A;  5JFF A;  4LU4 A; 
#chains in the Genus database with same CATH homology
 4X2D A;  3CUC A;  3LET A;  4N67 A;  4X2C A;  3S6A A;  4U0S A;  4WGJ A;  5JFZ A;  4ITR A;  4U0Z A;  2VY3 A;  3ZLM A;  4NPS A;  3ZCB A;  4X2E A;  3SN9 A;  4PY3 A;  3N3U A;  3ZC7 A;  5JJ6 A;  4XI8 A;  5EU0 A;  3SE5 A;  5CMT A;  5CGL A;  4U04 A;  4U07 A;  5JJ7 A;  2G03 A;  3SHG A;  2F6S A;  2JK8 A;  2VZA A;  4M16 A;  4U0U A;  5CKL A;  5JFF A;  4LU4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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