3ZCB | Genus

Total Genus 71

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	71
sequence length	189
structure length	185
Chain Sequence	DPYTDPETGVMYNLLGIKDQARLERVESAFAYIRSFELGRTSISGKFDLDHMKKIHKKLFGDVYEWAGKTRLVDISKFAHYTQIESYAPQITQQLAREQHLRGLDANEFSQRAGYYMGELNALHPFREGNGRTLREFIWQLAREAGYHIDWDRVERQEMTRASIESYYGNSDLMSALIRRNLTEF

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold. pubmed doi rcsb
molecule keywords	ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE VBHT
molecule tags	Transferase/antitoxin
source organism	Bartonella schoenbuchensis
total genus	71
structure length	185
sequence length	189
ec nomenclature	ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date	2012-11-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02661	Fic	Fic/DOC family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.10	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fido-like domain	3zcbA00

5CGLA 4LU4A 3N3UA 4M16A 4PY3A 3LETA 4ITRA 3ZC7A 4U04A 4X2DA 5JFZA 3SHGA 4U0SA 3S6AA 2F6SA 4NPSA 3SN9A 4U0UA 5CKLA 4X2CA 4X2EA 5EU0A 2VZAA 2G03A 2VY3A 4U07A 5JJ6A 4U0ZA 3SE5A 3ZCBA 4WGJA 3CUCA 5JJ7A 3ZLMA 2JK8A 5CMTA 4N67A 5JFFA 4XI8A
chains in the Genus database with same CATH superfamily

5CGLA 4LU4A 3N3UA 4M16A 4PY3A 3LETA 4ITRA 2NUNA 3ZC7A 4U04A 4X2DA 5JFZA 3SHGA 4U0SA 3S6AA 2F6SA 4NPSA 1NH1A 3SN9A 4U0UA 5CKLA 4X2CA 4X2EA 5EU0A 2VZAA 2G03A 2VY3A 4U07A 2NUDA 5JJ6A 4U0ZA 3SE5A 3ZCBA 4WGJA 3CUCA 5JJ7A 3ZLMA 2JK8A 5CMTA 4N67A 5JFFA 4XI8A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5CGL A;  4LU4 A;  3N3U A;  4M16 A;  4PY3 A;  3LET A;  4ITR A;  3ZC7 A;  4U04 A;  4X2D A;  5JFZ A;  3SHG A;  4U0S A;  3S6A A;  2F6S A;  4NPS A;  3SN9 A;  4U0U A;  5CKL A;  4X2C A;  4X2E A;  5EU0 A;  2VZA A;  2G03 A;  2VY3 A;  4U07 A;  5JJ6 A;  4U0Z A;  3SE5 A;  3ZCB A;  4WGJ A;  3CUC A;  5JJ7 A;  3ZLM A;  2JK8 A;  5CMT A;  4N67 A;  5JFF A;  4XI8 A; 
#chains in the Genus database with same CATH topology
 5CGL A;  4LU4 A;  3N3U A;  4M16 A;  4PY3 A;  3LET A;  4ITR A;  2NUN A;  3ZC7 A;  4U04 A;  4X2D A;  5JFZ A;  3SHG A;  4U0S A;  3S6A A;  2F6S A;  4NPS A;  1NH1 A;  3SN9 A;  4U0U A;  5CKL A;  4X2C A;  4X2E A;  5EU0 A;  2VZA A;  2G03 A;  2VY3 A;  4U07 A;  2NUD A;  5JJ6 A;  4U0Z A;  3SE5 A;  3ZCB A;  4WGJ A;  3CUC A;  5JJ7 A;  3ZLM A;  2JK8 A;  5CMT A;  4N67 A;  5JFF A;  4XI8 A; 
#chains in the Genus database with same CATH homology
 5CGL A;  4LU4 A;  3N3U A;  4M16 A;  4PY3 A;  3LET A;  4ITR A;  3ZC7 A;  4U04 A;  4X2D A;  5JFZ A;  3SHG A;  4U0S A;  3S6A A;  2F6S A;  4NPS A;  3SN9 A;  4U0U A;  5CKL A;  4X2C A;  4X2E A;  5EU0 A;  2VZA A;  2G03 A;  2VY3 A;  4U07 A;  5JJ6 A;  4U0Z A;  3SE5 A;  3ZCB A;  4WGJ A;  3CUC A;  5JJ7 A;  3ZLM A;  2JK8 A;  5CMT A;  4N67 A;  5JFF A;  4XI8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3ZCBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations