4ITR | Genus

Total Genus 116

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	116
sequence length	299
structure length	299
Chain Sequence	VNYQDLEDNLNLKGLISLEDDRNANFESNVLKNEKFLDEAREISKKSIPEATVKQMSHLPEFDDILTEGAKKVESRINKAITFRPSVEEFSEIQDLVKTLPKTKVIEDLSTKTNEITEALAATSKTIQRTPELKEQLKTAIEDFLQNSQGKPLTVQMIENLNHGLRPDEGEGRLLYKKENLTKENAVFSSPEAAKIQLAETVDFINRAKNEGIEPSVVGALVYQRLIAYAPFAEGNGRMARVIVNKILLDAGYPAFTKFSDEFEPQIIPQTKASTKSATSSEVVVEFLKELAKKGSKED

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Haemophilus somnus
publication title	Structural basis of Fic-mediated adenylylation. pubmed doi rcsb
molecule keywords	Adenosine monophosphate-protein transferase and cysteine pro
total genus	116
structure length	299
sequence length	299
chains with identical sequence	B
ec nomenclature	ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date	2013-01-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02661	Fic	Fic/DOC family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.10	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fido-like domain	4itrA00

5CGLA 3SHGA 2F6SA 2VY3A 3LETA 5JFZA 3S6AA 4X2DA 5JJ7A 4U04A 4ITRA 3ZLMA 4PY3A 4X2EA 4U0SA 5EU0A 4U07A 5CMTA 3SN9A 3ZC7A 2G03A 4U0ZA 3N3UA 4XI8A 3ZCBA 5JJ6A 3CUCA 3SE5A 2JK8A 4N67A 5JFFA 4M16A 4U0UA 4WGJA 5CKLA 2VZAA 4X2CA 4NPSA 4LU4A
chains in the Genus database with same CATH superfamily

5CGLA 3SHGA 2F6SA 2NUDA 2VY3A 3LETA 5JFZA 3S6AA 4X2DA 5JJ7A 4U04A 4ITRA 3ZLMA 4PY3A 4X2EA 4U0SA 5EU0A 4U07A 5CMTA 3SN9A 3ZC7A 2G03A 4U0ZA 3N3UA 2NUNA 1NH1A 4XI8A 3ZCBA 5JJ6A 3CUCA 3SE5A 2JK8A 4N67A 5JFFA 4M16A 4U0UA 4WGJA 5CKLA 2VZAA 4X2CA 4NPSA 4LU4A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5CGL A;  3SHG A;  2F6S A;  2VY3 A;  3LET A;  5JFZ A;  3S6A A;  4X2D A;  5JJ7 A;  4U04 A;  4ITR A;  3ZLM A;  4PY3 A;  4X2E A;  4U0S A;  5EU0 A;  4U07 A;  5CMT A;  3SN9 A;  3ZC7 A;  2G03 A;  4U0Z A;  3N3U A;  4XI8 A;  3ZCB A;  5JJ6 A;  3CUC A;  3SE5 A;  2JK8 A;  4N67 A;  5JFF A;  4M16 A;  4U0U A;  4WGJ A;  5CKL A;  2VZA A;  4X2C A;  4NPS A;  4LU4 A; 
#chains in the Genus database with same CATH topology
 5CGL A;  3SHG A;  2F6S A;  2NUD A;  2VY3 A;  3LET A;  5JFZ A;  3S6A A;  4X2D A;  5JJ7 A;  4U04 A;  4ITR A;  3ZLM A;  4PY3 A;  4X2E A;  4U0S A;  5EU0 A;  4U07 A;  5CMT A;  3SN9 A;  3ZC7 A;  2G03 A;  4U0Z A;  3N3U A;  2NUN A;  1NH1 A;  4XI8 A;  3ZCB A;  5JJ6 A;  3CUC A;  3SE5 A;  2JK8 A;  4N67 A;  5JFF A;  4M16 A;  4U0U A;  4WGJ A;  5CKL A;  2VZA A;  4X2C A;  4NPS A;  4LU4 A; 
#chains in the Genus database with same CATH homology
 5CGL A;  3SHG A;  2F6S A;  2VY3 A;  3LET A;  5JFZ A;  3S6A A;  4X2D A;  5JJ7 A;  4U04 A;  4ITR A;  3ZLM A;  4PY3 A;  4X2E A;  4U0S A;  5EU0 A;  4U07 A;  5CMT A;  3SN9 A;  3ZC7 A;  2G03 A;  4U0Z A;  3N3U A;  4XI8 A;  3ZCB A;  5JJ6 A;  3CUC A;  3SE5 A;  2JK8 A;  4N67 A;  5JFF A;  4M16 A;  4U0U A;  4WGJ A;  5CKL A;  2VZA A;  4X2C A;  4NPS A;  4LU4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4ITRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations