4LUPA

Crystal structure of the complex formed by region of e. coli sigmae bound to its -10 element non template strand
Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
91
structure length
91
Chain Sequence
LTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRLEL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (7-16)AH3 (46-60)AH2 (19-39)3H1 (43-45)EMPTY3H2 (61-63)TIV1 (66-69)AH4 (70-93)Updating...
connected with : NaN
molecule tags Transcription/dna
source organism Escherichia coli
publication title Structural basis for -10 promoter element melting by environmentally induced sigma factors.
pubmed doi rcsb
molecule keywords RNA polymerase sigma factor
total genus 36
structure length 91
sequence length 91
chains with identical sequence C
ec nomenclature
pdb deposition date 2013-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04542 Sigma70_r2 Sigma-70 region 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1740.10 Mainly Alpha Orthogonal Bundle Rna Polymerase Sigma Factor; Chain: A Rna Polymerase Sigma Factor; Chain: A 4lupA00
1G5AA 1ONOA 1MW1A 3CZLA 1SC5A 3ZI0A 4FLOA 3IIEA 1T1SA 4CXFA 2Y1EA 3A06A 1JG9A 5JNLA 1ZS2A 3AU9A 4AICA 3RASA 4ZQFA 1K5HA 1MW0A 4ZN6A 3ZHZA 5JMWA 1MVYA 1Q0LA 3CZGA 3UERA 1R0LA 2Y1GA 1JVSA 2JCYA 2JCXA 1T1RA 5JC1A 5JBIA 2Y1FA 1ONNA 2JD2A 1MW2A 3WQSB 1JGIA 3UEQA 2MAPA 3CZKA 2C82A 3AUAA 4ZQEA 2Y1DA 5DULA 1RP3A 4FLSA 4GAEA 2Y1CA 4ZQHA 3ANLA 3ZHYA 1R0KA 2JD0A 4Y6RA 4KP7A 4OOEA 1Q0HA 2EGHA 2O7GA 3T0YA 4OOFA 2JD1A 3WQRA 3R0IA 3A14A 1OR7A 4Y67A 3WQQA 4LUPA 1MW3A 3UCQA 2JCVA 5JMPA 1ONPA 4AYSA 5JAZA 2WPGA 3AU8A 2MAOA 1S46A 3ANNA 4A03A 4Y6SA 4Y6PA 3ANMA 4ZQGA 1H3LA 5JO0A 4NQWA 1Q0QA 4FLRA 3CZEA 4RCVA 4FLQA 3ZHXA
chains in the Genus database with same CATH superfamily
4ZX6A 1G5AA 2RJIA 1ONOA 1MW1A 4RVBA 3CZLA 4QPEA 2QJ1A 5HLTA 1SC5A 3ZI0A 4K5LA 3CHPA 2ZXGA 4FLOA 3T8VA 2PGGA 4QMEA 3IIEA 1T1SA 1H19A 4XMXA 4XN1A 4CXFA 2Y1EA 4FCAA 3A06A 4Q4EA 3FUFA 4FLQA 1JG9A 5JNLA 4XN5A 5HNFA 1X3ZA 4MS6A 3FTUA 3FUKA 3QJXA 1ZS2A 4K5PA 4XNBA 3ZHXA 3KEDA 4ZW5A 3AU9A 5BPPA 4XMTA 4XO4A 2XPZA 4XNDA 4XNAA 4ZW8A 4AICA 3RASA 3FTZA 2JV7A 3FHEA 4ZQFA 4AR8A 2A7OA 3CHRA 3FUMA 3PUUA 1K5HA 1MW0A 3FTVA 3JT1A 2XPYA 4PU2A 4ZN6A 4R5TA 1GW6A 5DLLA 3FU5A 4XN8A 4AR9A 3CHQA 2HPOA 3CXBA 3VVLA 3ZHZA 2VLAA 3FUEA 5JMWA 4Q4IA 2DQMA 1MVYA 1Q0LA 3CZGA 3RC3A 3UERA 2PL5A 4QHPA 1R0LA 2GTQA 3FTWA 3B2XA 2XQ0A 2Y1GA 5EV7A 1JVSA 2JCYA 3FH8A 2R59A 3CHSA 3CIAA 2JCXA 1T1RA 5JC1A 5AENA 4L2LA 4ZQTA 2QVWA 4XN9A 3FTXA 3HW2A 5JBIA 1SQMA 2Y1FA 3FU3A 1ONNA 2JD2A 1MW2A 4XN7A 1JGIA 3WQSB 2R70A 3RC8A 3FU6A 4ZX5A 4ZX4A 2DQ6A 4GAAA 2HPTA 3FTSA 3Q43A 4ZX3A 4K5MA 3UEQA 2MAPA 3CZKA 4XO3A 2B61A 3B2PA 3FUIA 1X3WA 2C82A 3AUAA 4XN4A 4XO5A 3EBHA 4ZQEA 2Y1DA 5DULA 1RP3A 3FTYA 4FLSA 4GAEA 4QUOA 3JSZA 3B7SA 2Y1CA 4ZQHA 1HS6A 3U9WA 3B7UX 4XMVA 3ANLA 2FFLA 4PVBA 3ZHYA 4XMUA 1R0KA 2JD0A 4JNDA 5FWQA 4Y6RA 3FH7A 4KP7A 4OOEA 4PW4A 3FUNA 1Q0HA 2EGHA 2O7GA 3FH5A 3T0YA 4OOFA 2JD1A 2WZFA 3WQRA 2PUSA 4DPRA 3FULA 3A14A 3R0IA 2WZGA 1OR7A 4Y67A 3WQQA 4LUPA 1MW3A 3UCQA 2JCVA 4XN2A 1ONPA 5DYFA 5JMPA 4K5NA 4ZW7A 4ZW6A 3Q44A 3B37A 3B7TA 4R5VA 4AYSA 5JAZA 5HNHA 2WPGA 4XMWA 4RSYA 4QIRA 3AU8A 4R5XA 2MAOA 1S46A 4ZW3A 3ANNA 4A03A 2VJ8A 2R72A 3FUHA 3CHOA 4MKTA 4Y6SA 2C5ZA 3FUJA 1SG7A 4J3BA 4Y6PA 4AR1A 3B7RL 3FU0A 3ANMA 3VVMA 4BKXA 3EBGA 3FUDA 4ZQGA 4ARFA 4K5OA 3B3BA 1H3LA 5JO0A 4NQWA 1Q0QA 4FLRA 4X2UA 4R7LA 3CZEA 4XMZA 4RCVA 3B34A 3EBIA
chains in the Genus database with same CATH topology
4ZX6A 1G5AA 2RJIA 1ONOA 1MW1A 4RVBA 3CZLA 4QPEA 2QJ1A 5HLTA 1SC5A 3ZI0A 4K5LA 3CHPA 2ZXGA 4FLOA 3T8VA 2PGGA 4QMEA 3IIEA 1T1SA 1H19A 4XMXA 4XN1A 4CXFA 2Y1EA 4FCAA 3A06A 4Q4EA 3FUFA 4FLQA 1JG9A 5JNLA 4XN5A 5HNFA 1X3ZA 4MS6A 3FTUA 3FUKA 3QJXA 1ZS2A 4K5PA 4XNBA 3ZHXA 3KEDA 4ZW5A 3AU9A 5BPPA 4XMTA 4XO4A 2XPZA 4XNDA 4XNAA 4ZW8A 4AICA 3RASA 3FTZA 2JV7A 3FHEA 4ZQFA 4AR8A 2A7OA 3CHRA 3FUMA 3PUUA 1K5HA 1MW0A 3FTVA 3JT1A 2XPYA 4PU2A 4ZN6A 4R5TA 1GW6A 5DLLA 3FU5A 4XN8A 4AR9A 3CHQA 2HPOA 3VVLA 3ZHZA 2VLAA 3FUEA 5JMWA 4Q4IA 2DQMA 1MVYA 1Q0LA 3CZGA 3RC3A 3UERA 2PL5A 4QHPA 1R0LA 2GTQA 3FTWA 3B2XA 2XQ0A 2Y1GA 5EV7A 1JVSA 2JCYA 3FH8A 2R59A 3CHSA 3CIAA 2JCXA 1T1RA 5JC1A 5AENA 4L2LA 4ZQTA 2QVWA 4XN9A 3FTXA 5JBIA 1SQMA 2Y1FA 3FU3A 1ONNA 2JD2A 1MW2A 4XN7A 1JGIA 3WQSB 2R70A 3RC8A 3FU6A 4ZX5A 4ZX4A 2DQ6A 4GAAA 2HPTA 3FTSA 3Q43A 4ZX3A 4K5MA 3UEQA 2MAPA 3CZKA 4XO3A 2B61A 3B2PA 3FUIA 1X3WA 2C82A 3AUAA 4XN4A 4XO5A 3EBHA 4ZQEA 2Y1DA 5DULA 1RP3A 3FTYA 4FLSA 4GAEA 4QUOA 3JSZA 3B7SA 2Y1CA 4ZQHA 1HS6A 3U9WA 3B7UX 4XMVA 3ANLA 2FFLA 4PVBA 3ZHYA 4XMUA 1R0KA 2JD0A 4JNDA 5FWQA 4Y6RA 3FH7A 4KP7A 4OOEA 4PW4A 3FUNA 1Q0HA 2EGHA 2O7GA 3FH5A 3T0YA 4OOFA 2JD1A 2WZFA 3WQRA 2PUSA 4DPRA 3FULA 3A14A 3R0IA 2WZGA 1OR7A 4Y67A 3WQQA 4LUPA 1MW3A 3UCQA 2JCVA 4XN2A 1ONPA 5DYFA 5JMPA 4K5NA 4ZW7A 4ZW6A 3Q44A 3B37A 3B7TA 4R5VA 4AYSA 5JAZA 5HNHA 2WPGA 4XMWA 4RSYA 4QIRA 3AU8A 4R5XA 2MAOA 1S46A 4ZW3A 3ANNA 4A03A 2VJ8A 2R72A 3FUHA 3CHOA 4MKTA 4Y6SA 2C5ZA 3FUJA 1SG7A 4J3BA 4Y6PA 4AR1A 3B7RL 3FU0A 3ANMA 3VVMA 4BKXA 3EBGA 3FUDA 4ZQGA 4ARFA 4K5OA 3B3BA 1H3LA 5JO0A 4NQWA 1Q0QA 4FLRA 4X2UA 4R7LA 3CZEA 4XMZA 4RCVA 3B34A 3EBIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G5A A;  1ONO A;  1MW1 A;  3CZL A;  1SC5 A;  3ZI0 A;  4FLO A;  3IIE A;  1T1S A;  4CXF A;  2Y1E A;  3A06 A;  1JG9 A;  5JNL A;  1ZS2 A;  3AU9 A;  4AIC A;  3RAS A;  4ZQF A;  1K5H A;  1MW0 A;  4ZN6 A;  3ZHZ A;  5JMW A;  1MVY A;  1Q0L A;  3CZG A;  3UER A;  1R0L A;  2Y1G A;  1JVS A;  2JCY A;  2JCX A;  1T1R A;  5JC1 A;  5JBI A;  2Y1F A;  1ONN A;  2JD2 A;  1MW2 A;  3WQS B;  1JGI A;  3UEQ A;  2MAP A;  3CZK A;  2C82 A;  3AUA A;  4ZQE A;  2Y1D A;  5DUL A;  1RP3 A;  4FLS A;  4GAE A;  2Y1C A;  4ZQH A;  3ANL A;  3ZHY A;  1R0K A;  2JD0 A;  4Y6R A;  4KP7 A;  4OOE A;  1Q0H A;  2EGH A;  2O7G A;  3T0Y A;  4OOF A;  2JD1 A;  3WQR A;  3R0I A;  3A14 A;  1OR7 A;  4Y67 A;  3WQQ A;  4LUP A;  1MW3 A;  3UCQ A;  2JCV A;  5JMP A;  1ONP A;  4AYS A;  5JAZ A;  2WPG A;  3AU8 A;  2MAO A;  1S46 A;  3ANN A;  4A03 A;  4Y6S A;  4Y6P A;  3ANM A;  4ZQG A;  1H3L A;  5JO0 A;  4NQW A;  1Q0Q A;  4FLR A;  3CZE A;  4RCV A;  4FLQ A;  3ZHX A; 
#chains in the Genus database with same CATH topology
 4ZX6 A;  1G5A A;  2RJI A;  1ONO A;  1MW1 A;  4RVB A;  3CZL A;  4QPE A;  2QJ1 A;  5HLT A;  1SC5 A;  3ZI0 A;  4K5L A;  3CHP A;  2ZXG A;  4FLO A;  3T8V A;  2PGG A;  4QME A;  3IIE A;  1T1S A;  1H19 A;  4XMX A;  4XN1 A;  4CXF A;  2Y1E A;  4FCA A;  3A06 A;  4Q4E A;  3FUF A;  4FLQ A;  1JG9 A;  5JNL A;  4XN5 A;  5HNF A;  1X3Z A;  4MS6 A;  3FTU A;  3FUK A;  3QJX A;  1ZS2 A;  4K5P A;  4XNB A;  3ZHX A;  3KED A;  4ZW5 A;  3AU9 A;  5BPP A;  4XMT A;  4XO4 A;  2XPZ A;  4XND A;  4XNA A;  4ZW8 A;  4AIC A;  3RAS A;  3FTZ A;  2JV7 A;  3FHE A;  4ZQF A;  4AR8 A;  2A7O A;  3CHR A;  3FUM A;  3PUU A;  1K5H A;  1MW0 A;  3FTV A;  3JT1 A;  2XPY A;  4PU2 A;  4ZN6 A;  4R5T A;  1GW6 A;  5DLL A;  3FU5 A;  4XN8 A;  4AR9 A;  3CHQ A;  2HPO A;  3CXB A;  3VVL A;  3ZHZ A;  2VLA A;  3FUE A;  5JMW A;  4Q4I A;  2DQM A;  1MVY A;  1Q0L A;  3CZG A;  3RC3 A;  3UER A;  2PL5 A;  4QHP A;  1R0L A;  2GTQ A;  3FTW A;  3B2X A;  2XQ0 A;  2Y1G A;  5EV7 A;  1JVS A;  2JCY A;  3FH8 A;  2R59 A;  3CHS A;  3CIA A;  2JCX A;  1T1R A;  5JC1 A;  5AEN A;  4L2L A;  4ZQT A;  2QVW A;  4XN9 A;  3FTX A;  3HW2 A;  5JBI A;  1SQM A;  2Y1F A;  3FU3 A;  1ONN A;  2JD2 A;  1MW2 A;  4XN7 A;  1JGI A;  3WQS B;  2R70 A;  3RC8 A;  3FU6 A;  4ZX5 A;  4ZX4 A;  2DQ6 A;  4GAA A;  2HPT A;  3FTS A;  3Q43 A;  4ZX3 A;  4K5M A;  3UEQ A;  2MAP A;  3CZK A;  4XO3 A;  2B61 A;  3B2P A;  3FUI A;  1X3W A;  2C82 A;  3AUA A;  4XN4 A;  4XO5 A;  3EBH A;  4ZQE A;  2Y1D A;  5DUL A;  1RP3 A;  3FTY A;  4FLS A;  4GAE A;  4QUO A;  3JSZ A;  3B7S A;  2Y1C A;  4ZQH A;  1HS6 A;  3U9W A;  3B7U X;  4XMV A;  3ANL A;  2FFL A;  4PVB A;  3ZHY A;  4XMU A;  1R0K A;  2JD0 A;  4JND A;  5FWQ A;  4Y6R A;  3FH7 A;  4KP7 A;  4OOE A;  4PW4 A;  3FUN A;  1Q0H A;  2EGH A;  2O7G A;  3FH5 A;  3T0Y A;  4OOF A;  2JD1 A;  2WZF A;  3WQR A;  2PUS A;  4DPR A;  3FUL A;  3A14 A;  3R0I A;  2WZG A;  1OR7 A;  4Y67 A;  3WQQ A;  4LUP A;  1MW3 A;  3UCQ A;  2JCV A;  4XN2 A;  1ONP A;  5DYF A;  5JMP A;  4K5N A;  4ZW7 A;  4ZW6 A;  3Q44 A;  3B37 A;  3B7T A;  4R5V A;  4AYS A;  5JAZ A;  5HNH A;  2WPG A;  4XMW A;  4RSY A;  4QIR A;  3AU8 A;  4R5X A;  2MAO A;  1S46 A;  4ZW3 A;  3ANN A;  4A03 A;  2VJ8 A;  2R72 A;  3FUH A;  3CHO A;  4MKT A;  4Y6S A;  2C5Z A;  3FUJ A;  1SG7 A;  4J3B A;  4Y6P A;  4AR1 A;  3B7R L;  3FU0 A;  3ANM A;  3VVM A;  4BKX A;  3EBG A;  3FUD A;  4ZQG A;  4ARF A;  4K5O A;  3B3B A;  1H3L A;  5JO0 A;  4NQW A;  1Q0Q A;  4FLR A;  4X2U A;  4R7L A;  3CZE A;  4XMZ A;  4RCV A;  3B34 A;  3EBI A; 
#chains in the Genus database with same CATH homology
 4ZX6 A;  1G5A A;  2RJI A;  1ONO A;  1MW1 A;  4RVB A;  3CZL A;  4QPE A;  2QJ1 A;  5HLT A;  1SC5 A;  3ZI0 A;  4K5L A;  3CHP A;  2ZXG A;  4FLO A;  3T8V A;  2PGG A;  4QME A;  3IIE A;  1T1S A;  1H19 A;  4XMX A;  4XN1 A;  4CXF A;  2Y1E A;  4FCA A;  3A06 A;  4Q4E A;  3FUF A;  4FLQ A;  1JG9 A;  5JNL A;  4XN5 A;  5HNF A;  1X3Z A;  4MS6 A;  3FTU A;  3FUK A;  3QJX A;  1ZS2 A;  4K5P A;  4XNB A;  3ZHX A;  3KED A;  4ZW5 A;  3AU9 A;  5BPP A;  4XMT A;  4XO4 A;  2XPZ A;  4XND A;  4XNA A;  4ZW8 A;  4AIC A;  3RAS A;  3FTZ A;  2JV7 A;  3FHE A;  4ZQF A;  4AR8 A;  2A7O A;  3CHR A;  3FUM A;  3PUU A;  1K5H A;  1MW0 A;  3FTV A;  3JT1 A;  2XPY A;  4PU2 A;  4ZN6 A;  4R5T A;  1GW6 A;  5DLL A;  3FU5 A;  4XN8 A;  4AR9 A;  3CHQ A;  2HPO A;  3VVL A;  3ZHZ A;  2VLA A;  3FUE A;  5JMW A;  4Q4I A;  2DQM A;  1MVY A;  1Q0L A;  3CZG A;  3RC3 A;  3UER A;  2PL5 A;  4QHP A;  1R0L A;  2GTQ A;  3FTW A;  3B2X A;  2XQ0 A;  2Y1G A;  5EV7 A;  1JVS A;  2JCY A;  3FH8 A;  2R59 A;  3CHS A;  3CIA A;  2JCX A;  1T1R A;  5JC1 A;  5AEN A;  4L2L A;  4ZQT A;  2QVW A;  4XN9 A;  3FTX A;  5JBI A;  1SQM A;  2Y1F A;  3FU3 A;  1ONN A;  2JD2 A;  1MW2 A;  4XN7 A;  1JGI A;  3WQS B;  2R70 A;  3RC8 A;  3FU6 A;  4ZX5 A;  4ZX4 A;  2DQ6 A;  4GAA A;  2HPT A;  3FTS A;  3Q43 A;  4ZX3 A;  4K5M A;  3UEQ A;  2MAP A;  3CZK A;  4XO3 A;  2B61 A;  3B2P A;  3FUI A;  1X3W A;  2C82 A;  3AUA A;  4XN4 A;  4XO5 A;  3EBH A;  4ZQE A;  2Y1D A;  5DUL A;  1RP3 A;  3FTY A;  4FLS A;  4GAE A;  4QUO A;  3JSZ A;  3B7S A;  2Y1C A;  4ZQH A;  1HS6 A;  3U9W A;  3B7U X;  4XMV A;  3ANL A;  2FFL A;  4PVB A;  3ZHY A;  4XMU A;  1R0K A;  2JD0 A;  4JND A;  5FWQ A;  4Y6R A;  3FH7 A;  4KP7 A;  4OOE A;  4PW4 A;  3FUN A;  1Q0H A;  2EGH A;  2O7G A;  3FH5 A;  3T0Y A;  4OOF A;  2JD1 A;  2WZF A;  3WQR A;  2PUS A;  4DPR A;  3FUL A;  3A14 A;  3R0I A;  2WZG A;  1OR7 A;  4Y67 A;  3WQQ A;  4LUP A;  1MW3 A;  3UCQ A;  2JCV A;  4XN2 A;  1ONP A;  5DYF A;  5JMP A;  4K5N A;  4ZW7 A;  4ZW6 A;  3Q44 A;  3B37 A;  3B7T A;  4R5V A;  4AYS A;  5JAZ A;  5HNH A;  2WPG A;  4XMW A;  4RSY A;  4QIR A;  3AU8 A;  4R5X A;  2MAO A;  1S46 A;  4ZW3 A;  3ANN A;  4A03 A;  2VJ8 A;  2R72 A;  3FUH A;  3CHO A;  4MKT A;  4Y6S A;  2C5Z A;  3FUJ A;  1SG7 A;  4J3B A;  4Y6P A;  4AR1 A;  3B7R L;  3FU0 A;  3ANM A;  3VVM A;  4BKX A;  3EBG A;  3FUD A;  4ZQG A;  4ARF A;  4K5O A;  3B3B A;  1H3L A;  5JO0 A;  4NQW A;  1Q0Q A;  4FLR A;  4X2U A;  4R7L A;  3CZE A;  4XMZ A;  4RCV A;  3B34 A;  3EBI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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