4M16 | Genus

Total Genus 82

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	82
sequence length	225
structure length	225
Chain Sequence	AHHHHHHMVLNYFYPGTKTLKNKLGIMGYKQLEKRCKRNAKKVINSLRNEPLPETFDSSYLKYLHKRLFGSAFEWAGYTRDLSFAFDDGTIAQMSMMKIPGTDIYFAHGDKIQENLKEFDEILASKSNLQGLSREDFIEETVKLFSFLNYIHPFRAGNEAVQHIFFEKLAEAAGHKLDFSVVTEERIMRACNDAMALKGEEAHQAMKSLFEDISNPEEVIILRDF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell adhesion
source organism	Bartonella sp. ar 15-3
publication title	Crystal Structure of the N-terminal Fic Domain of Bartonella effector protein (Bep); substrate of VirB T4SS (VirB-translocated Bep effector protein) from Bartonella sp. AR 15-3 rcsb
molecule keywords	Bartonella effector protein (Bep) substrate of VirB T4SS
total genus	82
structure length	225
sequence length	225
ec nomenclature
pdb deposition date	2013-08-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02661	Fic	Fic/DOC family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.10	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fido-like domain	4m16A00

3ZCBA 3S6AA 2F6SA 5JJ7A 2G03A 4PY3A 4X2EA 4N67A 4U0SA 3SE5A 3LETA 3N3UA 4NPSA 4M16A 5EU0A 4U07A 5JJ6A 4XI8A 3CUCA 3ZC7A 3SHGA 3SN9A 2VY3A 2JK8A 4ITRA 4LU4A 4X2CA 5JFFA 4WGJA 3ZLMA 2VZAA 5JFZA 4U0ZA 4X2DA 5CKLA 4U04A 4U0UA 5CMTA 5CGLA
chains in the Genus database with same CATH superfamily

3ZCBA 3S6AA 2F6SA 5JJ7A 2G03A 4PY3A 4X2EA 4N67A 4U0SA 3SE5A 3LETA 3N3UA 4NPSA 4M16A 5EU0A 4U07A 5JJ6A 4XI8A 3CUCA 3ZC7A 3SHGA 3SN9A 2VY3A 2JK8A 4ITRA 2NUDA 4LU4A 4X2CA 5JFFA 4WGJA 3ZLMA 2VZAA 5JFZA 4U0ZA 4X2DA 1NH1A 5CKLA 4U04A 4U0UA 5CMTA 2NUNA 5CGLA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3ZCB A;  3S6A A;  2F6S A;  5JJ7 A;  2G03 A;  4PY3 A;  4X2E A;  4N67 A;  4U0S A;  3SE5 A;  3LET A;  3N3U A;  4NPS A;  4M16 A;  5EU0 A;  4U07 A;  5JJ6 A;  4XI8 A;  3CUC A;  3ZC7 A;  3SHG A;  3SN9 A;  2VY3 A;  2JK8 A;  4ITR A;  4LU4 A;  4X2C A;  5JFF A;  4WGJ A;  3ZLM A;  2VZA A;  5JFZ A;  4U0Z A;  4X2D A;  5CKL A;  4U04 A;  4U0U A;  5CMT A;  5CGL A; 
#chains in the Genus database with same CATH topology
 3ZCB A;  3S6A A;  2F6S A;  5JJ7 A;  2G03 A;  4PY3 A;  4X2E A;  4N67 A;  4U0S A;  3SE5 A;  3LET A;  3N3U A;  4NPS A;  4M16 A;  5EU0 A;  4U07 A;  5JJ6 A;  4XI8 A;  3CUC A;  3ZC7 A;  3SHG A;  3SN9 A;  2VY3 A;  2JK8 A;  4ITR A;  2NUD A;  4LU4 A;  4X2C A;  5JFF A;  4WGJ A;  3ZLM A;  2VZA A;  5JFZ A;  4U0Z A;  4X2D A;  1NH1 A;  5CKL A;  4U04 A;  4U0U A;  5CMT A;  2NUN A;  5CGL A; 
#chains in the Genus database with same CATH homology
 3ZCB A;  3S6A A;  2F6S A;  5JJ7 A;  2G03 A;  4PY3 A;  4X2E A;  4N67 A;  4U0S A;  3SE5 A;  3LET A;  3N3U A;  4NPS A;  4M16 A;  5EU0 A;  4U07 A;  5JJ6 A;  4XI8 A;  3CUC A;  3ZC7 A;  3SHG A;  3SN9 A;  2VY3 A;  2JK8 A;  4ITR A;  4LU4 A;  4X2C A;  5JFF A;  4WGJ A;  3ZLM A;  2VZA A;  5JFZ A;  4U0Z A;  4X2D A;  5CKL A;  4U04 A;  4U0U A;  5CMT A;  5CGL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4M16A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations