4M16A

Crystal structure of the n-terminal fic domain of bartonella effector protein (bep); substrate of virb t4ss (virb-translocated bep effector protein) from bartonella sp. ar 15-3
Total Genus 82
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
225
structure length
225
Chain Sequence
AHHHHHHMVLNYFYPGTKTLKNKLGIMGYKQLEKRCKRNAKKVINSLRNEPLPETFDSSYLKYLHKRLFGSAFEWAGYTRDLSFAFDDGTIAQMSMMKIPGTDIYFAHGDKIQENLKEFDEILASKSNLQGLSREDFIEETVKLFSFLNYIHPFRAGNEAVQHIFFEKLAEAAGHKLDFSVVTEERIMRACNDAMALKGEEAHQAMKSLFEDISNPEEVIILRDF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal Structure of the N-terminal Fic Domain of Bartonella effector protein (Bep); substrate of VirB T4SS (VirB-translocated Bep effector protein) from Bartonella sp. AR 15-3
rcsb
molecule tags Cell adhesion
source organism Bartonella sp. ar 15-3
molecule keywords Bartonella effector protein (Bep) substrate of VirB T4SS
total genus 82
structure length 225
sequence length 225
ec nomenclature
pdb deposition date 2013-08-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 4m16A00
5CMTA 4N67A 5CKLA 5EU0A 4LU4A 4NPSA 4X2EA 2G03A 3SHGA 4U0UA 3ZCBA 3ZLMA 4X2CA 4U04A 2VY3A 2F6SA 2JK8A 3ZC7A 4U0SA 4U0ZA 5JFFA 3S6AA 3CUCA 5JFZA 2VZAA 4WGJA 5CGLA 4X2DA 4XI8A 4U07A 3SN9A 4M16A 3LETA 3N3UA 4ITRA 5JJ6A 4PY3A 3SE5A 5JJ7A
chains in the Genus database with same CATH superfamily
5CMTA 4N67A 5CKLA 5EU0A 4LU4A 4NPSA 4X2EA 2G03A 3SHGA 4U0UA 3ZCBA 2NUDA 3ZLMA 4X2CA 4U04A 2VY3A 2F6SA 2JK8A 3ZC7A 1NH1A 4U0SA 4U0ZA 5JFFA 3S6AA 3CUCA 5JFZA 2VZAA 4WGJA 5CGLA 2NUNA 4X2DA 4XI8A 4U07A 3SN9A 4M16A 3LETA 3N3UA 4ITRA 5JJ6A 4PY3A 3SE5A 5JJ7A
chains in the Genus database with same CATH topology
5CMTA 4N67A 5CKLA 5EU0A 4LU4A 4NPSA 4X2EA 2G03A 3SHGA 4U0UA 3ZCBA 3ZLMA 4X2CA 4U04A 2VY3A 2F6SA 2JK8A 3ZC7A 4U0SA 4U0ZA 5JFFA 3S6AA 3CUCA 5JFZA 2VZAA 4WGJA 5CGLA 4X2DA 4XI8A 4U07A 3SN9A 4M16A 3LETA 3N3UA 4ITRA 5JJ6A 4PY3A 3SE5A 5JJ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CMT A;  4N67 A;  5CKL A;  5EU0 A;  4LU4 A;  4NPS A;  4X2E A;  2G03 A;  3SHG A;  4U0U A;  3ZCB A;  3ZLM A;  4X2C A;  4U04 A;  2VY3 A;  2F6S A;  2JK8 A;  3ZC7 A;  4U0S A;  4U0Z A;  5JFF A;  3S6A A;  3CUC A;  5JFZ A;  2VZA A;  4WGJ A;  5CGL A;  4X2D A;  4XI8 A;  4U07 A;  3SN9 A;  4M16 A;  3LET A;  3N3U A;  4ITR A;  5JJ6 A;  4PY3 A;  3SE5 A;  5JJ7 A; 
#chains in the Genus database with same CATH topology
 5CMT A;  4N67 A;  5CKL A;  5EU0 A;  4LU4 A;  4NPS A;  4X2E A;  2G03 A;  3SHG A;  4U0U A;  3ZCB A;  2NUD A;  3ZLM A;  4X2C A;  4U04 A;  2VY3 A;  2F6S A;  2JK8 A;  3ZC7 A;  1NH1 A;  4U0S A;  4U0Z A;  5JFF A;  3S6A A;  3CUC A;  5JFZ A;  2VZA A;  4WGJ A;  5CGL A;  2NUN A;  4X2D A;  4XI8 A;  4U07 A;  3SN9 A;  4M16 A;  3LET A;  3N3U A;  4ITR A;  5JJ6 A;  4PY3 A;  3SE5 A;  5JJ7 A; 
#chains in the Genus database with same CATH homology
 5CMT A;  4N67 A;  5CKL A;  5EU0 A;  4LU4 A;  4NPS A;  4X2E A;  2G03 A;  3SHG A;  4U0U A;  3ZCB A;  3ZLM A;  4X2C A;  4U04 A;  2VY3 A;  2F6S A;  2JK8 A;  3ZC7 A;  4U0S A;  4U0Z A;  5JFF A;  3S6A A;  3CUC A;  5JFZ A;  2VZA A;  4WGJ A;  5CGL A;  4X2D A;  4XI8 A;  4U07 A;  3SN9 A;  4M16 A;  3LET A;  3N3U A;  4ITR A;  5JJ6 A;  4PY3 A;  3SE5 A;  5JJ7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...