4N67 | Genus

Total Genus 83

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	83
sequence length	214
structure length	214
Chain Sequence	HMEHNYFYKNSATLKNKHGIKNPRKLYERCAHETAREAVNFRLEPPPGKFDAAYLRTIHWCLFHKTFEWAGVTRDQPFTFEDGSTACMPAMRPKGYKVPFAVGSQIQRELKKLEQRLTAKNNLQGLSRQEFAANAAEVFTALDHAHPFRKGNGRTQRMFMEKLGQAAGYKIDFSLITKERMTYASIEAMQHNNPEPMKDLFEDITHPQKSLLLK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 214 atoms

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214 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Bartonella quintana
publication title	Crystal Structure of the N-terminal Fic Domain of a Putative Cell Filamentation protein (VirB-translocated Bep effector protein) with bound ADP from Bartonella quintana rcsb
molecule keywords	Putative cell filamentation protein
total genus	83
structure length	214
sequence length	214
ec nomenclature
pdb deposition date	2013-10-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02661	Fic	Fic/DOC family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.10	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fido-like domain	4n67A00

3LETA 4ITRA 4X2DA 3ZC7A 2JK8A 4X2CA 5JJ6A 4M16A 5CKLA 4NPSA 4U0ZA 3ZCBA 3SN9A 3CUCA 4U0SA 2VZAA 3N3UA 4N67A 5CGLA 5JFFA 3ZLMA 4LU4A 4U0UA 4PY3A 4XI8A 4U04A 2G03A 4WGJA 2F6SA 3SHGA 3SE5A 2VY3A 4U07A 3S6AA 5EU0A 4X2EA 5JJ7A 5JFZA 5CMTA
chains in the Genus database with same CATH superfamily

1NH1A 3LETA 4ITRA 4X2DA 3ZC7A 2JK8A 4X2CA 5JJ6A 4M16A 5CKLA 4NPSA 4U0ZA 3ZCBA 3SN9A 3CUCA 4U0SA 2VZAA 3N3UA 4N67A 5CGLA 5JFFA 3ZLMA 4LU4A 4U0UA 4PY3A 4XI8A 4U04A 2G03A 2NUDA 4WGJA 2F6SA 3SHGA 3SE5A 2VY3A 2NUNA 4U07A 3S6AA 5EU0A 4X2EA 5JJ7A 5JFZA 5CMTA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3LET A;  4ITR A;  4X2D A;  3ZC7 A;  2JK8 A;  4X2C A;  5JJ6 A;  4M16 A;  5CKL A;  4NPS A;  4U0Z A;  3ZCB A;  3SN9 A;  3CUC A;  4U0S A;  2VZA A;  3N3U A;  4N67 A;  5CGL A;  5JFF A;  3ZLM A;  4LU4 A;  4U0U A;  4PY3 A;  4XI8 A;  4U04 A;  2G03 A;  4WGJ A;  2F6S A;  3SHG A;  3SE5 A;  2VY3 A;  4U07 A;  3S6A A;  5EU0 A;  4X2E A;  5JJ7 A;  5JFZ A;  5CMT A; 
#chains in the Genus database with same CATH topology
 1NH1 A;  3LET A;  4ITR A;  4X2D A;  3ZC7 A;  2JK8 A;  4X2C A;  5JJ6 A;  4M16 A;  5CKL A;  4NPS A;  4U0Z A;  3ZCB A;  3SN9 A;  3CUC A;  4U0S A;  2VZA A;  3N3U A;  4N67 A;  5CGL A;  5JFF A;  3ZLM A;  4LU4 A;  4U0U A;  4PY3 A;  4XI8 A;  4U04 A;  2G03 A;  2NUD A;  4WGJ A;  2F6S A;  3SHG A;  3SE5 A;  2VY3 A;  2NUN A;  4U07 A;  3S6A A;  5EU0 A;  4X2E A;  5JJ7 A;  5JFZ A;  5CMT A; 
#chains in the Genus database with same CATH homology
 3LET A;  4ITR A;  4X2D A;  3ZC7 A;  2JK8 A;  4X2C A;  5JJ6 A;  4M16 A;  5CKL A;  4NPS A;  4U0Z A;  3ZCB A;  3SN9 A;  3CUC A;  4U0S A;  2VZA A;  3N3U A;  4N67 A;  5CGL A;  5JFF A;  3ZLM A;  4LU4 A;  4U0U A;  4PY3 A;  4XI8 A;  4U04 A;  2G03 A;  4WGJ A;  2F6S A;  3SHG A;  3SE5 A;  2VY3 A;  4U07 A;  3S6A A;  5EU0 A;  4X2E A;  5JJ7 A;  5JFZ A;  5CMT A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4N67A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations