4TR6 | Genus

Total Genus 91

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	91
sequence length	380
structure length	380
Chain Sequence	SHMKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKEEGDKEIVTIEQPGSIVLQARFFSEIVKKLPMATVEIEVQNQYLTIIRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSELLCTATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKAKNVLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAKPAESIEISSNSPEIGKVVEAIVADQIEGEELNISFSPKYMLDALKVLEGAEIRVSFTGAMRPFLIRTPNDETIVQLILPVRTY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 380 atoms

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380 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein
source organism	Bacillus subtilis
publication title	Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins. pubmed doi rcsb
molecule keywords	DNA polymerase III subunit beta
total genus	91
structure length	380
sequence length	380
chains with identical sequence	B
ec nomenclature	ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date	2014-06-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00712	DNA_pol3_beta	DNA polymerase III beta subunit, N-terminal domain
A	PF02767	DNA_pol3_beta_2	DNA polymerase III beta subunit, central domain
A	PF02768	DNA_pol3_beta_3	DNA polymerase III beta subunit, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	4tr6A01
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	4tr6A02

3PWEA 3Q4KA 2IX2C 1PLRA 4N99A 3HI8A 4K3SA 3LX1A 3TBLA 1UNNA 4K3MA 4K3LA 5DA7A 2HIIC 3Q4JA 2NTIC 4K3OA 3Q4LA 3RB9A 1SXJF 4N98A 3A1JC 5H0TA 2ZVWA 1U7BA 4D2GA 1W60A 3FDSC 2POLA 1VYMA 4TRTA 1UL1A 3AIZA 5CFKA 3U60F 1B8HA 5HACA 2ZVMA 3L10A 1B77A 4TSZA 5DAIA 5IWDA 2AVTA 1OK7A 4TR8A 3LX2A 3P83A 3F1WA 3VKXA 4MJQA 4K74A 5E0TA 3V60B 4N9AA 5FVEA 4L60A 4MJPA 5AGVA 1YYPA 4N95A 4N97A 1RXZA 4ZTDA 3P16A 1IZ5A 4CS5A 4TR7A 3IFVA 1JQLA 3D1FA 3F1VA 4K3QA 2IO4A 4OVFA 3G65A 4MJRA 4OVHA 2IJXA 3BEPA 3D1EA 2ZVKA 3G65B 1ISQA 4PNUA 2IO4B 3QSBA 3P91A 2HIIA 1PLQA 3AIZC 3V62B 3WGWA 3V61B 5B7OA 1T6LA 5AUJA 1RWZA 2IZOB 4TR6A 4HK1A 4L6PA 3I2MX 1GE8A 3L0WA 2HIKA 4RJFA 4RKIA 3P87A 3AIXA 5IXAA 1JQJA 2XURA 1CZDA 4N96A 3GGRA 2HIKB 1U76A 3PGEB 1VYJA 3AIXB 5IY4A 4K3PA 2IX2A 3U61F 4N94A 3GGRB 2ZVVA 3K4XA 2IX2B 2ZVLA 3GPMA 1UD9A 3A2FB 5FRQA 3G65C 5E0UA 3U5ZF 3FDSD 4K3RA 2NTIA 4PNWA 3QSBB 5AH2A 3A1JA 3T0PA 2HIIB 3HSLX 3D1GA 1IZ4A 2Z0LA 4S3IA 2NTIB 4K3KA 2IZOC 3A1JB 5AH4A 1AXCA 2OD8A 1VPKA 2AWAA 4OVGA 5AGUA 4YHRA 4PNVA 3L0XA 1MMIA 3GPNA 5E0VA 2HIKC 1RXMA 1DMLA 5JNED 5A6DA 3GGRC
chains in the Genus database with same CATH superfamily

3PWEA 3Q4KA 2IX2C 1PLRA 4N99A 3HI8A 4K3SA 3LX1A 3TBLA 1UNNA 4K3MA 4K3LA 5DA7A 2HIIC 3Q4JA 2NTIC 4K3OA 3Q4LA 3RB9A 1SXJF 4N98A 3A1JC 5H0TA 2ZVWA 1U7BA 4D2GA 1W60A 3FDSC 2POLA 1VYMA 4TRTA 1UL1A 3AIZA 5CFKA 3U60F 1B8HA 5HACA 2ZVMA 3L10A 1B77A 4TSZA 5DAIA 5IWDA 2AVTA 1OK7A 4TR8A 3LX2A 3P83A 3F1WA 3VKXA 4MJQA 4K74A 5E0TA 3V60B 4N9AA 5FVEA 4L60A 4MJPA 5AGVA 1YYPA 4N95A 4N97A 1RXZA 4ZTDA 3P16A 1IZ5A 4CS5A 4TR7A 3IFVA 1JQLA 3D1FA 3F1VA 4K3QA 2IO4A 4OVFA 3G65A 4MJRA 4OVHA 2IJXA 3BEPA 3D1EA 2ZVKA 3G65B 1ISQA 4PNUA 2IO4B 3QSBA 3P91A 2HIIA 1PLQA 3AIZC 3V62B 3WGWA 3V61B 3L10B 5B7OA 1T6LA 5AUJA 1RWZA 2IZOB 4TR6A 4HK1A 4L6PA 3I2MX 1GE8A 3L0WA 2HIKA 4RJFA 4RKIA 3P87A 3PGEA 3AIXA 5IXAA 1JQJA 2XURA 1CZDA 4N96A 3GGRA 3L0WB 2HIKB 1U76A 3PGEB 1VYJA 3AIXB 5IY4A 4K3PA 2IX2A 3U61F 4N94A 3GGRB 2ZVVA 3K4XA 2IX2B 2ZVLA 3GPMA 1UD9A 3A2FB 5FRQA 3G65C 5E0UA 3U5ZF 3FDSD 4K3RA 2NTIA 4PNWA 3QSBB 5AH2A 3A1JA 3T0PA 2HIIB 3HSLX 3D1GA 1IZ4A 2Z0LA 4S3IA 2NTIB 4K3KA 2IZOC 3A1JB 5AH4A 1AXCA 2OD8A 1VPKA 2AWAA 4OVGA 5AGUA 4YHRA 4PNVA 3L0XA 1MMIA 3GPNA 5E0VA 2HIKC 1RXMA 1DMLA 3L0XB 5JNED 5A6DA 3GGRC
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3PWE A;  3Q4K A;  2IX2 C;  1PLR A;  4N99 A;  3HI8 A;  4K3S A;  3LX1 A;  3TBL A;  1UNN A;  4K3M A;  4K3L A;  5DA7 A;  2HII C;  3Q4J A;  2NTI C;  4K3O A;  3Q4L A;  3RB9 A;  1SXJ F;  4N98 A;  3A1J C;  5H0T A;  2ZVW A;  1U7B A;  4D2G A;  1W60 A;  3FDS C;  2POL A;  1VYM A;  4TRT A;  1UL1 A;  3AIZ A;  5CFK A;  3U60 F;  1B8H A;  5HAC A;  2ZVM A;  3L10 A;  1B77 A;  4TSZ A;  5DAI A;  5IWD A;  2AVT A;  1OK7 A;  4TR8 A;  3LX2 A;  3P83 A;  3F1W A;  3VKX A;  4MJQ A;  4K74 A;  5E0T A;  3V60 B;  4N9A A;  5FVE A;  4L60 A;  4MJP A;  5AGV A;  1YYP A;  4N95 A;  4N97 A;  1RXZ A;  4ZTD A;  3P16 A;  1IZ5 A;  4CS5 A;  4TR7 A;  3IFV A;  1JQL A;  3D1F A;  3F1V A;  4K3Q A;  2IO4 A;  4OVF A;  3G65 A;  4MJR A;  4OVH A;  2IJX A;  3BEP A;  3D1E A;  2ZVK A;  3G65 B;  1ISQ A;  4PNU A;  2IO4 B;  3QSB A;  3P91 A;  2HII A;  1PLQ A;  3AIZ C;  3V62 B;  3WGW A;  3V61 B;  5B7O A;  1T6L A;  5AUJ A;  1RWZ A;  2IZO B;  4TR6 A;  4HK1 A;  4L6P A;  3I2M X;  1GE8 A;  3L0W A;  2HIK A;  4RJF A;  4RKI A;  3P87 A;  3AIX A;  5IXA A;  1JQJ A;  2XUR A;  1CZD A;  4N96 A;  3GGR A;  2HIK B;  1U76 A;  3PGE B;  1VYJ A;  3AIX B;  5IY4 A;  4K3P A;  2IX2 A;  3U61 F;  4N94 A;  3GGR B;  2ZVV A;  3K4X A;  2IX2 B;  2ZVL A;  3GPM A;  1UD9 A;  3A2F B;  5FRQ A;  3G65 C;  5E0U A;  3U5Z F;  3FDS D;  4K3R A;  2NTI A;  4PNW A;  3QSB B;  5AH2 A;  3A1J A;  3T0P A;  2HII B;  3HSL X;  3D1G A;  1IZ4 A;  2Z0L A;  4S3I A;  2NTI B;  4K3K A;  2IZO C;  3A1J B;  5AH4 A;  1AXC A;  2OD8 A;  1VPK A;  2AWA A;  4OVG A;  5AGU A;  4YHR A;  4PNV A;  3L0X A;  1MMI A;  3GPN A;  5E0V A;  2HIK C;  1RXM A;  1DML A;  5JNE D;  5A6D A;  3GGR C; 
#chains in the Genus database with same CATH topology
 3PWE A;  3Q4K A;  2IX2 C;  1PLR A;  4N99 A;  3HI8 A;  4K3S A;  3LX1 A;  3TBL A;  1UNN A;  4K3M A;  4K3L A;  5DA7 A;  2HII C;  3Q4J A;  2NTI C;  4K3O A;  3Q4L A;  3RB9 A;  1SXJ F;  4N98 A;  3A1J C;  5H0T A;  2ZVW A;  1U7B A;  4D2G A;  1W60 A;  3FDS C;  2POL A;  1VYM A;  4TRT A;  1UL1 A;  3AIZ A;  5CFK A;  3U60 F;  1B8H A;  5HAC A;  2ZVM A;  3L10 A;  1B77 A;  4TSZ A;  5DAI A;  5IWD A;  2AVT A;  1OK7 A;  4TR8 A;  3LX2 A;  3P83 A;  3F1W A;  3VKX A;  4MJQ A;  4K74 A;  5E0T A;  3V60 B;  4N9A A;  5FVE A;  4L60 A;  4MJP A;  5AGV A;  1YYP A;  4N95 A;  4N97 A;  1RXZ A;  4ZTD A;  3P16 A;  1IZ5 A;  4CS5 A;  4TR7 A;  3IFV A;  1JQL A;  3D1F A;  3F1V A;  4K3Q A;  2IO4 A;  4OVF A;  3G65 A;  4MJR A;  4OVH A;  2IJX A;  3BEP A;  3D1E A;  2ZVK A;  3G65 B;  1ISQ A;  4PNU A;  2IO4 B;  3QSB A;  3P91 A;  2HII A;  1PLQ A;  3AIZ C;  3V62 B;  3WGW A;  3V61 B;  3L10 B;  5B7O A;  1T6L A;  5AUJ A;  1RWZ A;  2IZO B;  4TR6 A;  4HK1 A;  4L6P A;  3I2M X;  1GE8 A;  3L0W A;  2HIK A;  4RJF A;  4RKI A;  3P87 A;  3PGE A;  3AIX A;  5IXA A;  1JQJ A;  2XUR A;  1CZD A;  4N96 A;  3GGR A;  3L0W B;  2HIK B;  1U76 A;  3PGE B;  1VYJ A;  3AIX B;  5IY4 A;  4K3P A;  2IX2 A;  3U61 F;  4N94 A;  3GGR B;  2ZVV A;  3K4X A;  2IX2 B;  2ZVL A;  3GPM A;  1UD9 A;  3A2F B;  5FRQ A;  3G65 C;  5E0U A;  3U5Z F;  3FDS D;  4K3R A;  2NTI A;  4PNW A;  3QSB B;  5AH2 A;  3A1J A;  3T0P A;  2HII B;  3HSL X;  3D1G A;  1IZ4 A;  2Z0L A;  4S3I A;  2NTI B;  4K3K A;  2IZO C;  3A1J B;  5AH4 A;  1AXC A;  2OD8 A;  1VPK A;  2AWA A;  4OVG A;  5AGU A;  4YHR A;  4PNV A;  3L0X A;  1MMI A;  3GPN A;  5E0V A;  2HIK C;  1RXM A;  1DML A;  3L0X B;  5JNE D;  5A6D A;  3GGR C; 
#chains in the Genus database with same CATH homology
 3PWE A;  3Q4K A;  2IX2 C;  1PLR A;  4N99 A;  3HI8 A;  4K3S A;  3LX1 A;  3TBL A;  1UNN A;  4K3M A;  4K3L A;  5DA7 A;  2HII C;  3Q4J A;  2NTI C;  4K3O A;  3Q4L A;  3RB9 A;  1SXJ F;  4N98 A;  3A1J C;  5H0T A;  2ZVW A;  1U7B A;  4D2G A;  1W60 A;  3FDS C;  2POL A;  1VYM A;  4TRT A;  1UL1 A;  3AIZ A;  5CFK A;  3U60 F;  1B8H A;  5HAC A;  2ZVM A;  3L10 A;  1B77 A;  4TSZ A;  5DAI A;  5IWD A;  2AVT A;  1OK7 A;  4TR8 A;  3LX2 A;  3P83 A;  3F1W A;  3VKX A;  4MJQ A;  4K74 A;  5E0T A;  3V60 B;  4N9A A;  5FVE A;  4L60 A;  4MJP A;  5AGV A;  1YYP A;  4N95 A;  4N97 A;  1RXZ A;  4ZTD A;  3P16 A;  1IZ5 A;  4CS5 A;  4TR7 A;  3IFV A;  1JQL A;  3D1F A;  3F1V A;  4K3Q A;  2IO4 A;  4OVF A;  3G65 A;  4MJR A;  4OVH A;  2IJX A;  3BEP A;  3D1E A;  2ZVK A;  3G65 B;  1ISQ A;  4PNU A;  2IO4 B;  3QSB A;  3P91 A;  2HII A;  1PLQ A;  3AIZ C;  3V62 B;  3WGW A;  3V61 B;  5B7O A;  1T6L A;  5AUJ A;  1RWZ A;  2IZO B;  4TR6 A;  4HK1 A;  4L6P A;  3I2M X;  1GE8 A;  3L0W A;  2HIK A;  4RJF A;  4RKI A;  3P87 A;  3AIX A;  5IXA A;  1JQJ A;  2XUR A;  1CZD A;  4N96 A;  3GGR A;  2HIK B;  1U76 A;  3PGE B;  1VYJ A;  3AIX B;  5IY4 A;  4K3P A;  2IX2 A;  3U61 F;  4N94 A;  3GGR B;  2ZVV A;  3K4X A;  2IX2 B;  2ZVL A;  3GPM A;  1UD9 A;  3A2F B;  5FRQ A;  3G65 C;  5E0U A;  3U5Z F;  3FDS D;  4K3R A;  2NTI A;  4PNW A;  3QSB B;  5AH2 A;  3A1J A;  3T0P A;  2HII B;  3HSL X;  3D1G A;  1IZ4 A;  2Z0L A;  4S3I A;  2NTI B;  4K3K A;  2IZO C;  3A1J B;  5AH4 A;  1AXC A;  2OD8 A;  1VPK A;  2AWA A;  4OVG A;  5AGU A;  4YHR A;  4PNV A;  3L0X A;  1MMI A;  3GPN A;  5E0V A;  2HIK C;  1RXM A;  1DML A;  5JNE D;  5A6D A;  3GGR C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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4TR6A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations