4WGJ | Genus

Total Genus 77

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	77
sequence length	210
structure length	210
Chain Sequence	HHMEQNYLYKGTTTLKNKYGIKDPNKLYERCNHDVVKEAVNFRHEPPPQNFDAAYLSLIHWSLFHKTFEWAGHTRDTSFTFEDGTTARMPAMRPKGYEAPFAIGPQIKKELKQLEKTLNQKNNLKGLSHQEFAENAADVFMALEHAHPFRKGNGRANRMFMEKLGQAAGHTVDFSFITKGRMTTACIEAMQYGNSQPMKDLFEDITHPQK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 210 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Bartonella tribocorum
publication title	Crystal Structure of BepC protein (VirB-translocated Bartonella effector protein) with bound AMPPNP from Bartonella tribocorum rcsb
molecule keywords	BepC protein
total genus	77
structure length	210
sequence length	210
ec nomenclature
pdb deposition date	2014-09-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02661	Fic	Fic/DOC family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.10	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fido-like domain	4wgjA00

2VZAA 3SN9A 5CKLA 4X2EA 4X2CA 4U0UA 5CGLA 4U0SA 3SE5A 2JK8A 2VY3A 3LETA 3N3UA 5EU0A 3ZLMA 5CMTA 3ZCBA 3CUCA 5JFZA 3SHGA 4PY3A 4XI8A 5JFFA 4N67A 4X2DA 4NPSA 4U04A 4U07A 4M16A 3ZC7A 5JJ7A 2G03A 3S6AA 4WGJA 5JJ6A 4ITRA 2F6SA 4LU4A 4U0ZA
chains in the Genus database with same CATH superfamily

2VZAA 3SN9A 5CKLA 4X2EA 2NUDA 4X2CA 4U0UA 5CGLA 4U0SA 3SE5A 2JK8A 2VY3A 3LETA 3N3UA 5EU0A 3ZLMA 5CMTA 3ZCBA 3CUCA 1NH1A 5JFZA 3SHGA 2NUNA 4PY3A 4XI8A 5JFFA 4N67A 4X2DA 4NPSA 4U04A 4U07A 4M16A 3ZC7A 5JJ7A 2G03A 3S6AA 4WGJA 5JJ6A 4ITRA 2F6SA 4LU4A 4U0ZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2VZA A;  3SN9 A;  5CKL A;  4X2E A;  4X2C A;  4U0U A;  5CGL A;  4U0S A;  3SE5 A;  2JK8 A;  2VY3 A;  3LET A;  3N3U A;  5EU0 A;  3ZLM A;  5CMT A;  3ZCB A;  3CUC A;  5JFZ A;  3SHG A;  4PY3 A;  4XI8 A;  5JFF A;  4N67 A;  4X2D A;  4NPS A;  4U04 A;  4U07 A;  4M16 A;  3ZC7 A;  5JJ7 A;  2G03 A;  3S6A A;  4WGJ A;  5JJ6 A;  4ITR A;  2F6S A;  4LU4 A;  4U0Z A; 
#chains in the Genus database with same CATH topology
 2VZA A;  3SN9 A;  5CKL A;  4X2E A;  2NUD A;  4X2C A;  4U0U A;  5CGL A;  4U0S A;  3SE5 A;  2JK8 A;  2VY3 A;  3LET A;  3N3U A;  5EU0 A;  3ZLM A;  5CMT A;  3ZCB A;  3CUC A;  1NH1 A;  5JFZ A;  3SHG A;  2NUN A;  4PY3 A;  4XI8 A;  5JFF A;  4N67 A;  4X2D A;  4NPS A;  4U04 A;  4U07 A;  4M16 A;  3ZC7 A;  5JJ7 A;  2G03 A;  3S6A A;  4WGJ A;  5JJ6 A;  4ITR A;  2F6S A;  4LU4 A;  4U0Z A; 
#chains in the Genus database with same CATH homology
 2VZA A;  3SN9 A;  5CKL A;  4X2E A;  4X2C A;  4U0U A;  5CGL A;  4U0S A;  3SE5 A;  2JK8 A;  2VY3 A;  3LET A;  3N3U A;  5EU0 A;  3ZLM A;  5CMT A;  3ZCB A;  3CUC A;  5JFZ A;  3SHG A;  4PY3 A;  4XI8 A;  5JFF A;  4N67 A;  4X2D A;  4NPS A;  4U04 A;  4U07 A;  4M16 A;  3ZC7 A;  5JJ7 A;  2G03 A;  3S6A A;  4WGJ A;  5JJ6 A;  4ITR A;  2F6S A;  4LU4 A;  4U0Z A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4WGJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations