4X2C | Genus

Total Genus 81

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	81
sequence length	232
structure length	207
Chain Sequence	SFLDKLIETKELKNSLYNVLKHNFLYHANKIAGSTFTTEALALLLDKNVVTGRHTLDDVQETVNSSYVFDTVIDSLKEKITHNFLRNLHSSLIFNTTQPFEVEPKLDELIEWYYSQSEVSIKVIAEFHYRFELIHPFQDGNGRIGRFVMLKQMLENNLPIKIVSWDSEDLYRNSLNSCSLGNYVPLIEYLSSLEDFREVYKMLWKLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Peptoclostridium difficile
publication title	Structure of Clostridium difficile Fic_0569 S31A, E35A mutant at 1.8 Angstroms resolution rcsb
molecule keywords	Fic family protein putative filamentation induced by cAMP pr
total genus	81
structure length	207
sequence length	232
chains with identical sequence	B
ec nomenclature
pdb deposition date	2014-11-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02661	Fic	Fic/DOC family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.10	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fido-like domain	4x2cA00

4LU4A 4X2CA 2F6SA 4XI8A 4U07A 5CKLA 2VZAA 3ZC7A 5EU0A 3LETA 4U0SA 3ZLMA 3ZCBA 4U0ZA 2G03A 2JK8A 3N3UA 5JJ6A 5JJ7A 2VY3A 5JFFA 5CMTA 5JFZA 3CUCA 4PY3A 3SE5A 4U0UA 5CGLA 3SN9A 4X2EA 4N67A 4NPSA 4WGJA 4X2DA 3S6AA 3SHGA 4U04A 4ITRA 4M16A
chains in the Genus database with same CATH superfamily

4LU4A 4X2CA 2F6SA 4XI8A 4U07A 5CKLA 2VZAA 3ZC7A 5EU0A 3LETA 4U0SA 3ZLMA 3ZCBA 4U0ZA 2G03A 2JK8A 3N3UA 5JJ6A 5JJ7A 2VY3A 5JFFA 2NUNA 5CMTA 5JFZA 3CUCA 4PY3A 3SE5A 4U0UA 5CGLA 1NH1A 3SN9A 4X2EA 4N67A 4NPSA 4WGJA 2NUDA 4X2DA 3S6AA 3SHGA 4U04A 4ITRA 4M16A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4LU4 A;  4X2C A;  2F6S A;  4XI8 A;  4U07 A;  5CKL A;  2VZA A;  3ZC7 A;  5EU0 A;  3LET A;  4U0S A;  3ZLM A;  3ZCB A;  4U0Z A;  2G03 A;  2JK8 A;  3N3U A;  5JJ6 A;  5JJ7 A;  2VY3 A;  5JFF A;  5CMT A;  5JFZ A;  3CUC A;  4PY3 A;  3SE5 A;  4U0U A;  5CGL A;  3SN9 A;  4X2E A;  4N67 A;  4NPS A;  4WGJ A;  4X2D A;  3S6A A;  3SHG A;  4U04 A;  4ITR A;  4M16 A; 
#chains in the Genus database with same CATH topology
 4LU4 A;  4X2C A;  2F6S A;  4XI8 A;  4U07 A;  5CKL A;  2VZA A;  3ZC7 A;  5EU0 A;  3LET A;  4U0S A;  3ZLM A;  3ZCB A;  4U0Z A;  2G03 A;  2JK8 A;  3N3U A;  5JJ6 A;  5JJ7 A;  2VY3 A;  5JFF A;  2NUN A;  5CMT A;  5JFZ A;  3CUC A;  4PY3 A;  3SE5 A;  4U0U A;  5CGL A;  1NH1 A;  3SN9 A;  4X2E A;  4N67 A;  4NPS A;  4WGJ A;  2NUD A;  4X2D A;  3S6A A;  3SHG A;  4U04 A;  4ITR A;  4M16 A; 
#chains in the Genus database with same CATH homology
 4LU4 A;  4X2C A;  2F6S A;  4XI8 A;  4U07 A;  5CKL A;  2VZA A;  3ZC7 A;  5EU0 A;  3LET A;  4U0S A;  3ZLM A;  3ZCB A;  4U0Z A;  2G03 A;  2JK8 A;  3N3U A;  5JJ6 A;  5JJ7 A;  2VY3 A;  5JFF A;  5CMT A;  5JFZ A;  3CUC A;  4PY3 A;  3SE5 A;  4U0U A;  5CGL A;  3SN9 A;  4X2E A;  4N67 A;  4NPS A;  4WGJ A;  4X2D A;  3S6A A;  3SHG A;  4U04 A;  4ITR A;  4M16 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4X2CA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations