4X2D | Genus

Total Genus 84

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	84
sequence length	230
structure length	227
Chain Sequence	SFLDKLIETKNSLYNVLKHNFLYHANKIAGSTFTTEALALLLDKNVVTGRHTLDDVQETVNSSYVFDTVIDSLKEKITHNFLRNLHSSLIFNTTLHSRGMAGIYKTIPNMILGTDVSIAQPFEVEPKLDELIEWYYSQSEVSIKVIAEFHYRFELIHPFQDGNGRIGRFVMLKQMLENNLPIKIVSWDSEDLYRNSLNSCSLGNYVPLIEYLSSLEDFREVYKMLWK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Peptoclostridium difficile
publication title	Structure of Clostridium difficile Fic_0569 S31A, E35A mutant at 1.8 Angstroms resolution rcsb
molecule keywords	Fic family protein putative filamentation induced by cAMP pr
total genus	84
structure length	227
sequence length	230
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2014-11-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02661	Fic	Fic/DOC family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.10	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fido-like domain	4x2dA00

4U07A 4U0UA 5JJ6A 4PY3A 2JK8A 4WGJA 4ITRA 5JFFA 5JFZA 2VY3A 3LETA 2F6SA 4LU4A 4M16A 2G03A 3ZLMA 3SHGA 4X2DA 3ZC7A 3S6AA 3N3UA 3SN9A 5JJ7A 5CMTA 2VZAA 4NPSA 5EU0A 5CKLA 4U0SA 3SE5A 4X2CA 5CGLA 3ZCBA 4N67A 4XI8A 4X2EA 4U04A 4U0ZA 3CUCA
chains in the Genus database with same CATH superfamily

4U07A 4U0UA 2NUDA 5JJ6A 4PY3A 2JK8A 4WGJA 4ITRA 5JFFA 5JFZA 2VY3A 3LETA 2F6SA 4LU4A 4M16A 1NH1A 2G03A 3ZLMA 3SHGA 2NUNA 4X2DA 3ZC7A 3S6AA 3N3UA 3SN9A 5JJ7A 5CMTA 2VZAA 4NPSA 5EU0A 5CKLA 4U0SA 3SE5A 4X2CA 5CGLA 3ZCBA 4N67A 4XI8A 4X2EA 4U04A 4U0ZA 3CUCA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4U07 A;  4U0U A;  5JJ6 A;  4PY3 A;  2JK8 A;  4WGJ A;  4ITR A;  5JFF A;  5JFZ A;  2VY3 A;  3LET A;  2F6S A;  4LU4 A;  4M16 A;  2G03 A;  3ZLM A;  3SHG A;  4X2D A;  3ZC7 A;  3S6A A;  3N3U A;  3SN9 A;  5JJ7 A;  5CMT A;  2VZA A;  4NPS A;  5EU0 A;  5CKL A;  4U0S A;  3SE5 A;  4X2C A;  5CGL A;  3ZCB A;  4N67 A;  4XI8 A;  4X2E A;  4U04 A;  4U0Z A;  3CUC A; 
#chains in the Genus database with same CATH topology
 4U07 A;  4U0U A;  2NUD A;  5JJ6 A;  4PY3 A;  2JK8 A;  4WGJ A;  4ITR A;  5JFF A;  5JFZ A;  2VY3 A;  3LET A;  2F6S A;  4LU4 A;  4M16 A;  1NH1 A;  2G03 A;  3ZLM A;  3SHG A;  2NUN A;  4X2D A;  3ZC7 A;  3S6A A;  3N3U A;  3SN9 A;  5JJ7 A;  5CMT A;  2VZA A;  4NPS A;  5EU0 A;  5CKL A;  4U0S A;  3SE5 A;  4X2C A;  5CGL A;  3ZCB A;  4N67 A;  4XI8 A;  4X2E A;  4U04 A;  4U0Z A;  3CUC A; 
#chains in the Genus database with same CATH homology
 4U07 A;  4U0U A;  5JJ6 A;  4PY3 A;  2JK8 A;  4WGJ A;  4ITR A;  5JFF A;  5JFZ A;  2VY3 A;  3LET A;  2F6S A;  4LU4 A;  4M16 A;  2G03 A;  3ZLM A;  3SHG A;  4X2D A;  3ZC7 A;  3S6A A;  3N3U A;  3SN9 A;  5JJ7 A;  5CMT A;  2VZA A;  4NPS A;  5EU0 A;  5CKL A;  4U0S A;  3SE5 A;  4X2C A;  5CGL A;  3ZCB A;  4N67 A;  4XI8 A;  4X2E A;  4U04 A;  4U0Z A;  3CUC A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4X2DA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations