5JFF | Genus

Total Genus 71

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	71
sequence length	189
structure length	188
Chain Sequence	DPYLYPLDIMRNRLNIHQQQRLEQAAYEMTALRAATIELGPLVRRLPHLRTIHRQLYQDIFDWAGQLREVDIYQGDTPFCHFAYIEKEGNALMQDLEEEGYLVGLEKAKFVERLAHYYCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQLSWQGIEKEAWNQANQSGAMGDLTALQMIFSKVVSEAGE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Escherichia coli (strain k12)
publication title	Crystal Structure of the Escherichia coli Fic Toxin-Like Protein in Complex with Its Cognate Antitoxin. pubmed doi rcsb
molecule keywords	Probable adenosine monophosphate-protein transferase fic
total genus	71
structure length	188
sequence length	189
chains with identical sequence	C
ec nomenclature	ec 2.7.7.n1: Protein adenylyltransferase.
pdb deposition date	2016-04-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02661	Fic	Fic/DOC family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.10	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fido-like domain	5jffA00

5JFZA 4U07A 5JFFA 5JJ6A 3ZC7A 3SN9A 4U04A 3ZCBA 5CMTA 4NPSA 5JJ7A 4U0SA 3SHGA 3CUCA 4M16A 4XI8A 4PY3A 2VY3A 3ZLMA 4X2DA 4X2CA 4N67A 2VZAA 4X2EA 2F6SA 5EU0A 3SE5A 4LU4A 5CGLA 3S6AA 4U0ZA 2JK8A 3N3UA 2G03A 5CKLA 3LETA 4WGJA 4ITRA 4U0UA
chains in the Genus database with same CATH superfamily

5JFZA 4U07A 5JFFA 5JJ6A 3ZC7A 3SN9A 4U04A 3ZCBA 5CMTA 4NPSA 1NH1A 2NUDA 5JJ7A 4U0SA 3SHGA 3CUCA 4M16A 4XI8A 4PY3A 2VY3A 3ZLMA 4X2DA 4X2CA 2NUNA 4N67A 2VZAA 4X2EA 2F6SA 5EU0A 3SE5A 4LU4A 5CGLA 3S6AA 4U0ZA 2JK8A 3N3UA 2G03A 5CKLA 3LETA 4WGJA 4ITRA 4U0UA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5JFZ A;  4U07 A;  5JFF A;  5JJ6 A;  3ZC7 A;  3SN9 A;  4U04 A;  3ZCB A;  5CMT A;  4NPS A;  5JJ7 A;  4U0S A;  3SHG A;  3CUC A;  4M16 A;  4XI8 A;  4PY3 A;  2VY3 A;  3ZLM A;  4X2D A;  4X2C A;  4N67 A;  2VZA A;  4X2E A;  2F6S A;  5EU0 A;  3SE5 A;  4LU4 A;  5CGL A;  3S6A A;  4U0Z A;  2JK8 A;  3N3U A;  2G03 A;  5CKL A;  3LET A;  4WGJ A;  4ITR A;  4U0U A; 
#chains in the Genus database with same CATH topology
 5JFZ A;  4U07 A;  5JFF A;  5JJ6 A;  3ZC7 A;  3SN9 A;  4U04 A;  3ZCB A;  5CMT A;  4NPS A;  1NH1 A;  2NUD A;  5JJ7 A;  4U0S A;  3SHG A;  3CUC A;  4M16 A;  4XI8 A;  4PY3 A;  2VY3 A;  3ZLM A;  4X2D A;  4X2C A;  2NUN A;  4N67 A;  2VZA A;  4X2E A;  2F6S A;  5EU0 A;  3SE5 A;  4LU4 A;  5CGL A;  3S6A A;  4U0Z A;  2JK8 A;  3N3U A;  2G03 A;  5CKL A;  3LET A;  4WGJ A;  4ITR A;  4U0U A; 
#chains in the Genus database with same CATH homology
 5JFZ A;  4U07 A;  5JFF A;  5JJ6 A;  3ZC7 A;  3SN9 A;  4U04 A;  3ZCB A;  5CMT A;  4NPS A;  5JJ7 A;  4U0S A;  3SHG A;  3CUC A;  4M16 A;  4XI8 A;  4PY3 A;  2VY3 A;  3ZLM A;  4X2D A;  4X2C A;  4N67 A;  2VZA A;  4X2E A;  2F6S A;  5EU0 A;  3SE5 A;  4LU4 A;  5CGL A;  3S6A A;  4U0Z A;  2JK8 A;  3N3U A;  2G03 A;  5CKL A;  3LET A;  4WGJ A;  4ITR A;  4U0U A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5JFFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations