1I9YA

Crystal structure of inositol polyphosphate 5-phosphatase domain (ipp5c) of spsynaptojanin
Total Genus 116
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
116
sequence length
345
structure length
336
Chain Sequence
YDPIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTSADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGNKGAVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRGELVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKILFEELYNQRKQEVRDASQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Specificity determinants in phosphoinositide dephosphorylation: crystal structure of an archetypal inositol polyphosphate 5-phosphatase.
pubmed doi rcsb
molecule tags Hydrolase
source organism Schizosaccharomyces pombe
molecule keywords PHOSPHATIDYLINOSITOL PHOSPHATE PHOSPHATASE
total genus 116
structure length 336
sequence length 345
ec nomenclature ec 3.1.3.36: Phosphoinositide 5-phosphatase.
pdb deposition date 2001-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.10.10 Alpha Beta 4-Layer Sandwich Deoxyribonuclease I; Chain A Endonuclease/exonuclease/phosphatase 1i9yA00
2F1NA 5INQA 3G91A 4GZ2A 5DV4A 3I5VA 3NGQA 5INKA 4F1HA 5DFHA 2A41B 2EI9A 4LNDA 4L20A 3G0RA 4CMNA 1NTFA 4GZ0A 5CFGA 2V0RA 1DNKA 4B5JA 5A7IA 4B5GA 3G38A 1DEWA 3NR8A 1HD7A 2A42B 1DE8A 2D1KB 3TEBA 3K55A 3G8VA 3G00A 4FVAA 3MTCA 4B5HA 4K6LF 4PUQA 4GZ1A 1I9YA 3G1KA 5J8NA 4AWNA 1I9ZA 3W3DB 5HT2A 4CMLA 1BIXA 3G0AA 4B5FA 4B5IA 4F1RA 3I48A 4GEWA 2DDSA 2A3ZB 2ISIA 4L21A 3FZIA 2A40B 3G3CA 3G6SA 3G2DA 3NGNA 2DDTA 3N9VA 2O3HA 1ZWXA 5DG0A 1SI6X 5EWTA 4F1HB 5J3ZA 1E9NA 5INMA 5DFFA 3WCXA 3DNIA 5J42A 2J63A 2JC5A 3W2XA 5CFEA 4FPVA 1SR4B 5DV2A 4GYZA 3CJCD 1VYBA 5J3PA 4C1RA 3L1WA 4RUWA 2JC4A 1Y21A 3I46A 4L1YA 4IEMA 2UYRX 4QH9A 2VOAA 4A9CA 5INNA 3W2YA 5DFIA 5INOA 2XSWA 4JG3A 1ATND 3G3YA 3U8UA 2DDRA 2F2FB 5INPA 4L1ZA 5DFJA 1WDUA 5A7JA 2DNJA 4QHEA 3G2CA 3MPRA 1DE9A 1AKOA 5INLA 3GA6A 4B5MA 3NGOA 2IMQX 1YJHA 2O3CA 2V0SA 4QHDA 4F1IA 3I41A 5J3SA 3G4TA
chains in the Genus database with same CATH superfamily
2F1NA 5INQA 3G91A 4GZ2A 5DV4A 3I5VA 3NGQA 5INKA 4F1HA 5DFHA 2A41B 2EI9A 4LNDA 4L20A 3G0RA 4CMNA 1NTFA 4GZ0A 5CFGA 2V0RA 1DNKA 4B5JA 5A7IA 4B5GA 3G38A 1DEWA 3NR8A 1HD7A 2A42B 1DE8A 2D1KB 3TEBA 3K55A 3G8VA 3G00A 4FVAA 3MTCA 4B5HA 4K6LF 4PUQA 4GZ1A 1I9YA 3G1KA 5J8NA 4AWNA 1I9ZA 3W3DB 5HT2A 4CMLA 1BIXA 3G0AA 4B5FA 4B5IA 4F1RA 3I48A 4GEWA 2DDSA 2A3ZB 2ISIA 4L21A 3FZIA 2A40B 3G3CA 3G6SA 3G2DA 3NGNA 2DDTA 3N9VA 2O3HA 1ZWXA 5DG0A 1SI6X 5EWTA 4F1HB 5J3ZA 1E9NA 5INMA 5DFFA 3WCXA 3DNIA 5J42A 2J63A 2JC5A 3W2XA 5CFEA 4FPVA 1SR4B 5DV2A 4GYZA 3CJCD 1VYBA 5J3PA 4C1RA 3L1WA 4RUWA 2JC4A 1Y21A 3I46A 4L1YA 4IEMA 2UYRX 4QH9A 2VOAA 4A9CA 5INNA 3W2YA 5DFIA 5INOA 2XSWA 4JG3A 1ATND 3G3YA 3U8UA 2DDRA 2F2FB 5INPA 4L1ZA 5DFJA 1WDUA 5A7JA 2DNJA 4QHEA 3G2CA 3MPRA 1DE9A 1AKOA 5INLA 3GA6A 4B5MA 3NGOA 2IMQX 1YJHA 2O3CA 2V0SA 4QHDA 4F1IA 3I41A 5J3SA 3G4TA
chains in the Genus database with same CATH topology
2F1NA 5INQA 3G91A 4GZ2A 5DV4A 3I5VA 3NGQA 5INKA 4F1HA 5DFHA 2A41B 2EI9A 4LNDA 4L20A 3G0RA 4CMNA 1NTFA 4GZ0A 5CFGA 2V0RA 1DNKA 4B5JA 5A7IA 4B5GA 3G38A 1DEWA 3NR8A 1HD7A 2A42B 1DE8A 2D1KB 3TEBA 3K55A 3G8VA 3G00A 4FVAA 3MTCA 4B5HA 4K6LF 4PUQA 4GZ1A 1I9YA 3G1KA 5J8NA 4AWNA 1I9ZA 3W3DB 5HT2A 4CMLA 1BIXA 3G0AA 4B5FA 4B5IA 4F1RA 3I48A 4GEWA 2DDSA 2A3ZB 2ISIA 4L21A 3FZIA 2A40B 3G3CA 3G6SA 3G2DA 3NGNA 2DDTA 3N9VA 2O3HA 1ZWXA 5DG0A 1SI6X 5EWTA 4F1HB 5J3ZA 1E9NA 5INMA 5DFFA 3WCXA 3DNIA 5J42A 2J63A 2JC5A 3W2XA 5CFEA 4FPVA 1SR4B 5DV2A 4GYZA 3CJCD 1VYBA 5J3PA 4C1RA 3L1WA 4RUWA 2JC4A 1Y21A 3I46A 4L1YA 4IEMA 2UYRX 4QH9A 2VOAA 4A9CA 5INNA 3W2YA 5DFIA 5INOA 2XSWA 4JG3A 1ATND 3G3YA 3U8UA 2DDRA 2F2FB 5INPA 4L1ZA 5DFJA 1WDUA 5A7JA 2DNJA 4QHEA 3G2CA 3MPRA 1DE9A 1AKOA 5INLA 3GA6A 4B5MA 3NGOA 2IMQX 1YJHA 2O3CA 2V0SA 4QHDA 4F1IA 3I41A 5J3SA 3G4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F1N A;  5INQ A;  3G91 A;  4GZ2 A;  5DV4 A;  3I5V A;  3NGQ A;  5INK A;  4F1H A;  5DFH A;  2A41 B;  2EI9 A;  4LND A;  4L20 A;  3G0R A;  4CMN A;  1NTF A;  4GZ0 A;  5CFG A;  2V0R A;  1DNK A;  4B5J A;  5A7I A;  4B5G A;  3G38 A;  1DEW A;  3NR8 A;  1HD7 A;  2A42 B;  1DE8 A;  2D1K B;  3TEB A;  3K55 A;  3G8V A;  3G00 A;  4FVA A;  3MTC A;  4B5H A;  4K6L F;  4PUQ A;  4GZ1 A;  1I9Y A;  3G1K A;  5J8N A;  4AWN A;  1I9Z A;  3W3D B;  5HT2 A;  4CML A;  1BIX A;  3G0A A;  4B5F A;  4B5I A;  4F1R A;  3I48 A;  4GEW A;  2DDS A;  2A3Z B;  2ISI A;  4L21 A;  3FZI A;  2A40 B;  3G3C A;  3G6S A;  3G2D A;  3NGN A;  2DDT A;  3N9V A;  2O3H A;  1ZWX A;  5DG0 A;  1SI6 X;  5EWT A;  4F1H B;  5J3Z A;  1E9N A;  5INM A;  5DFF A;  3WCX A;  3DNI A;  5J42 A;  2J63 A;  2JC5 A;  3W2X A;  5CFE A;  4FPV A;  1SR4 B;  5DV2 A;  4GYZ A;  3CJC D;  1VYB A;  5J3P A;  4C1R A;  3L1W A;  4RUW A;  2JC4 A;  1Y21 A;  3I46 A;  4L1Y A;  4IEM A;  2UYR X;  4QH9 A;  2VOA A;  4A9C A;  5INN A;  3W2Y A;  5DFI A;  5INO A;  2XSW A;  4JG3 A;  1ATN D;  3G3Y A;  3U8U A;  2DDR A;  2F2F B;  5INP A;  4L1Z A;  5DFJ A;  1WDU A;  5A7J A;  2DNJ A;  4QHE A;  3G2C A;  3MPR A;  1DE9 A;  1AKO A;  5INL A;  3GA6 A;  4B5M A;  3NGO A;  2IMQ X;  1YJH A;  2O3C A;  2V0S A;  4QHD A;  4F1I A;  3I41 A;  5J3S A;  3G4T A; 
#chains in the Genus database with same CATH topology
 2F1N A;  5INQ A;  3G91 A;  4GZ2 A;  5DV4 A;  3I5V A;  3NGQ A;  5INK A;  4F1H A;  5DFH A;  2A41 B;  2EI9 A;  4LND A;  4L20 A;  3G0R A;  4CMN A;  1NTF A;  4GZ0 A;  5CFG A;  2V0R A;  1DNK A;  4B5J A;  5A7I A;  4B5G A;  3G38 A;  1DEW A;  3NR8 A;  1HD7 A;  2A42 B;  1DE8 A;  2D1K B;  3TEB A;  3K55 A;  3G8V A;  3G00 A;  4FVA A;  3MTC A;  4B5H A;  4K6L F;  4PUQ A;  4GZ1 A;  1I9Y A;  3G1K A;  5J8N A;  4AWN A;  1I9Z A;  3W3D B;  5HT2 A;  4CML A;  1BIX A;  3G0A A;  4B5F A;  4B5I A;  4F1R A;  3I48 A;  4GEW A;  2DDS A;  2A3Z B;  2ISI A;  4L21 A;  3FZI A;  2A40 B;  3G3C A;  3G6S A;  3G2D A;  3NGN A;  2DDT A;  3N9V A;  2O3H A;  1ZWX A;  5DG0 A;  1SI6 X;  5EWT A;  4F1H B;  5J3Z A;  1E9N A;  5INM A;  5DFF A;  3WCX A;  3DNI A;  5J42 A;  2J63 A;  2JC5 A;  3W2X A;  5CFE A;  4FPV A;  1SR4 B;  5DV2 A;  4GYZ A;  3CJC D;  1VYB A;  5J3P A;  4C1R A;  3L1W A;  4RUW A;  2JC4 A;  1Y21 A;  3I46 A;  4L1Y A;  4IEM A;  2UYR X;  4QH9 A;  2VOA A;  4A9C A;  5INN A;  3W2Y A;  5DFI A;  5INO A;  2XSW A;  4JG3 A;  1ATN D;  3G3Y A;  3U8U A;  2DDR A;  2F2F B;  5INP A;  4L1Z A;  5DFJ A;  1WDU A;  5A7J A;  2DNJ A;  4QHE A;  3G2C A;  3MPR A;  1DE9 A;  1AKO A;  5INL A;  3GA6 A;  4B5M A;  3NGO A;  2IMQ X;  1YJH A;  2O3C A;  2V0S A;  4QHD A;  4F1I A;  3I41 A;  5J3S A;  3G4T A; 
#chains in the Genus database with same CATH homology
 2F1N A;  5INQ A;  3G91 A;  4GZ2 A;  5DV4 A;  3I5V A;  3NGQ A;  5INK A;  4F1H A;  5DFH A;  2A41 B;  2EI9 A;  4LND A;  4L20 A;  3G0R A;  4CMN A;  1NTF A;  4GZ0 A;  5CFG A;  2V0R A;  1DNK A;  4B5J A;  5A7I A;  4B5G A;  3G38 A;  1DEW A;  3NR8 A;  1HD7 A;  2A42 B;  1DE8 A;  2D1K B;  3TEB A;  3K55 A;  3G8V A;  3G00 A;  4FVA A;  3MTC A;  4B5H A;  4K6L F;  4PUQ A;  4GZ1 A;  1I9Y A;  3G1K A;  5J8N A;  4AWN A;  1I9Z A;  3W3D B;  5HT2 A;  4CML A;  1BIX A;  3G0A A;  4B5F A;  4B5I A;  4F1R A;  3I48 A;  4GEW A;  2DDS A;  2A3Z B;  2ISI A;  4L21 A;  3FZI A;  2A40 B;  3G3C A;  3G6S A;  3G2D A;  3NGN A;  2DDT A;  3N9V A;  2O3H A;  1ZWX A;  5DG0 A;  1SI6 X;  5EWT A;  4F1H B;  5J3Z A;  1E9N A;  5INM A;  5DFF A;  3WCX A;  3DNI A;  5J42 A;  2J63 A;  2JC5 A;  3W2X A;  5CFE A;  4FPV A;  1SR4 B;  5DV2 A;  4GYZ A;  3CJC D;  1VYB A;  5J3P A;  4C1R A;  3L1W A;  4RUW A;  2JC4 A;  1Y21 A;  3I46 A;  4L1Y A;  4IEM A;  2UYR X;  4QH9 A;  2VOA A;  4A9C A;  5INN A;  3W2Y A;  5DFI A;  5INO A;  2XSW A;  4JG3 A;  1ATN D;  3G3Y A;  3U8U A;  2DDR A;  2F2F B;  5INP A;  4L1Z A;  5DFJ A;  1WDU A;  5A7J A;  2DNJ A;  4QHE A;  3G2C A;  3MPR A;  1DE9 A;  1AKO A;  5INL A;  3GA6 A;  4B5M A;  3NGO A;  2IMQ X;  1YJH A;  2O3C A;  2V0S A;  4QHD A;  4F1I A;  3I41 A;  5J3S A;  3G4T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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