2EJQ | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	107
structure length	107
Chain Sequence	TYEAFVELVERLWEEVPEDFKRGLQGVHVFPEAKPEPGLEGVWRLGEYLDPGPPSAFGGFEDLGRHIALYYGSFLEVAGEGFDWEAEVWETMLHELRHHLESLAGRD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Thermus thermophilus
publication title	Conserved hypothetical protein (TTHA0227) from Thermo thermophilus HB8 rcsb
molecule keywords	Hypothetical protein TTHA0227
total genus	32
structure length	107
sequence length	107
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-03-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF06262	Zincin_1	Zincin-like metallopeptidase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2010.20	Alpha Beta	2-Layer Sandwich	Zincin-like	Zincin-like	2ejqA00

2EJQA 3E11A
chains in the Genus database with same CATH superfamily

1ZN3A 3QIZA 1G9AA 4ZJXA 1ZKXA 3FIIA 3DDBA 1F82A 4ELCA 1S0BA 3K3QB 2ISEA 4ZKTB 1E1HA 3QIYA 1G9CA 4J1LA 3C89A 3FFZA 3V0BA 1S0CA 2EJQA 2IMAA 3NF3A 4EJ5A 4KTXA 3C88A 3BOOA 3E11A 4KS6A 3DS9A 3C8BA 2ISGA 3DDAA 5BQMA 2FPQA 3QIXA 1ZL5A 1Z7HA 3D3XA 1EPWA 2ILPA 1G9BA 3QW8A 1I1EA 3ZUQA 2G7PA 2G7NA 1XTFA 1S0DA 2NZ9A 3QW5A 2G7QA 3BOKA 4KUFA 1G9DA 4JIXA 1ZB7A 3BONA 3DSEA 2A8AA 2A97A 2IMCA 3QJ0A 2W2DA 1S0EA 2ISHA 1ZL6A 2NYYA 3QW7A 3V0AB 3BWIA 3V0BB 2XHLA 3FIEA 4EL4A 1T3CA 1ZKWA 3DEBA 3VUOA 4IL3A 3ZURA 2G7KA 3CQBA 4QHFA 1XTGA 4AW6A 2ETFA 5BQNA 3QW6A 3V0AA 4HEVA 1T3AA 4JIUA 3BTAA 2YPTA 1S0FA 1S0GA 1F31A 1YVGA 2IMBA 2QN0A 3ZUSA 3C8AA 2NP0A
chains in the Genus database with same CATH topology

2EJQA 3E11A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2EJQ A;  3E11 A; 
#chains in the Genus database with same CATH topology
 1ZN3 A;  3QIZ A;  1G9A A;  4ZJX A;  1ZKX A;  3FII A;  3DDB A;  1F82 A;  4ELC A;  1S0B A;  3K3Q B;  2ISE A;  4ZKT B;  1E1H A;  3QIY A;  1G9C A;  4J1L A;  3C89 A;  3FFZ A;  3V0B A;  1S0C A;  2EJQ A;  2IMA A;  3NF3 A;  4EJ5 A;  4KTX A;  3C88 A;  3BOO A;  3E11 A;  4KS6 A;  3DS9 A;  3C8B A;  2ISG A;  3DDA A;  5BQM A;  2FPQ A;  3QIX A;  1ZL5 A;  1Z7H A;  3D3X A;  1EPW A;  2ILP A;  1G9B A;  3QW8 A;  1I1E A;  3ZUQ A;  2G7P A;  2G7N A;  1XTF A;  1S0D A;  2NZ9 A;  3QW5 A;  2G7Q A;  3BOK A;  4KUF A;  1G9D A;  4JIX A;  1ZB7 A;  3BON A;  3DSE A;  2A8A A;  2A97 A;  2IMC A;  3QJ0 A;  2W2D A;  1S0E A;  2ISH A;  1ZL6 A;  2NYY A;  3QW7 A;  3V0A B;  3BWI A;  3V0B B;  2XHL A;  3FIE A;  4EL4 A;  1T3C A;  1ZKW A;  3DEB A;  3VUO A;  4IL3 A;  3ZUR A;  2G7K A;  3CQB A;  4QHF A;  1XTG A;  4AW6 A;  2ETF A;  5BQN A;  3QW6 A;  3V0A A;  4HEV A;  1T3A A;  4JIU A;  3BTA A;  2YPT A;  1S0F A;  1S0G A;  1F31 A;  1YVG A;  2IMB A;  2QN0 A;  3ZUS A;  3C8A A;  2NP0 A; 
#chains in the Genus database with same CATH homology
 2EJQ A;  3E11 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2EJQA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations