The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
127
|
sequence length |
417
|
structure length |
392
|
Chain Sequence |
MPFVNKQFNYKDPVNGVDIAYIKIPNQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLPPPEAKQVPVSYYDSTYLSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQFECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEEGKFATDPAVTLAHELIHAGHRLYGIAINPNRVFKVNLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNLRNTNLAANFNGQNTEINNMNFTKLK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Iterative structure-based peptide-like inhibitor design against the botulinum neurotoxin serotype A.
pubmed doi rcsb |
molecule tags |
Hydrolase/hydrolase inhibitor
|
source organism |
Clostridium botulinum
|
molecule keywords |
BoNT/A
|
total genus |
127
|
structure length |
392
|
sequence length |
417
|
ec nomenclature | |
pdb deposition date | 2010-06-09 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF01742 | Peptidase_M27 | Clostridial neurotoxin zinc protease |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Alpha Beta | Alpha-Beta Complex | Zincin-like | Metalloproteases ("zincins"), catalytic domain like |
#chains in the Genus database with same CATH superfamily 4EJ5 A; 1S0D A; 3C89 A; 3BWI A; 1S0F A; 2G7P A; 3QIZ A; 1G9D A; 2FPQ A; 1E1H A; 2G7K A; 3QIX A; 3QW7 A; 2IMB A; 1ZKX A; 1XTG A; 2ISH A; 3QW5 A; 3ZUS A; 3V0A B; 3FII A; 3ZUQ A; 1G9C A; 3DSE A; 2NP0 A; 3QW6 A; 3QW8 A; 5BQM A; 4KUF A; 1T3A A; 2QN0 A; 1EPW A; 4J1L A; 3FFZ A; 3C8B A; 1S0E A; 2A8A A; 4ZJX A; 1Z7H A; 1G9A A; 3VUO A; 1S0C A; 1ZL6 A; 2ETF A; 4ELC A; 3BOO A; 2ISG A; 3K3Q B; 4KS6 A; 2IMC A; 1F31 A; 1ZB7 A; 3DEB A; 1XTF A; 1ZKW A; 2W2D A; 3C88 A; 1ZL5 A; 4EL4 A; 2G7Q A; 3NF3 A; 3V0B B; 4ZKT B; 3ZUR A; 3FIE A; 2ILP A; 3DS9 A; 3BTA A; 2NYY A; 3DDA A; 1I1E A; 1G9B A; 1F82 A; 3DDB A; 1ZN3 A; 3C8A A; 3BON A; 2G7N A; 3QJ0 A; 2IMA A; 3V0A A; 2ISE A; 3D3X A; 1S0B A; 5BQN A; 4KTX A; 2A97 A; 3BOK A; 2XHL A; 2NZ9 A; 1T3C A; 4HEV A; 1YVG A; 3QIY A; 3V0B A; 1S0G A; #chains in the Genus database with same CATH topology 4EJ5 A; 1S0D A; 3C89 A; 3BWI A; 1S0F A; 2G7P A; 3QIZ A; 1G9D A; 2FPQ A; 1E1H A; 2G7K A; 3QIX A; 3QW7 A; 2IMB A; 1ZKX A; 1XTG A; 2ISH A; 3QW5 A; 3ZUS A; 3V0A B; 3FII A; 3ZUQ A; 1G9C A; 4JIU A; 3DSE A; 2NP0 A; 3QW6 A; 3QW8 A; 5BQM A; 4KUF A; 1T3A A; 2QN0 A; 1EPW A; 4J1L A; 3FFZ A; 3C8B A; 1S0E A; 2A8A A; 4AW6 A; 4ZJX A; 1Z7H A; 1G9A A; 3VUO A; 1S0C A; 1ZL6 A; 2ETF A; 4ELC A; 3BOO A; 2ISG A; 3K3Q B; 4KS6 A; 2IMC A; 2YPT A; 1F31 A; 1ZB7 A; 3DEB A; 1XTF A; 1ZKW A; 2W2D A; 3C88 A; 1ZL5 A; 4EL4 A; 2G7Q A; 3NF3 A; 3V0B B; 4ZKT B; 3ZUR A; 3FIE A; 2ILP A; 4JIX A; 3DS9 A; 3BTA A; 2NYY A; 3DDA A; 1I1E A; 4QHF A; 1F82 A; 1G9B A; 3DDB A; 1ZN3 A; 3C8A A; 3BON A; 2G7N A; 3QJ0 A; 2IMA A; 3V0A A; 2ISE A; 3D3X A; 1S0B A; 5BQN A; 4KTX A; 2A97 A; 3BOK A; 2XHL A; 3E11 A; 2NZ9 A; 3CQB A; 2EJQ A; 1T3C A; 4HEV A; 1YVG A; 3QIY A; 3V0B A; 4IL3 A; 1S0G A; #chains in the Genus database with same CATH homology 4EJ5 A; 1S0D A; 3C89 A; 3BWI A; 1S0F A; 2G7P A; 3QIZ A; 1G9D A; 2FPQ A; 1E1H A; 2G7K A; 3QIX A; 3QW7 A; 2IMB A; 1ZKX A; 1XTG A; 2ISH A; 3QW5 A; 3ZUS A; 3V0A B; 3FII A; 3ZUQ A; 1G9C A; 3DSE A; 2NP0 A; 3QW6 A; 3QW8 A; 5BQM A; 4KUF A; 1T3A A; 2QN0 A; 1EPW A; 4J1L A; 3FFZ A; 3C8B A; 1S0E A; 2A8A A; 4ZJX A; 1Z7H A; 1G9A A; 3VUO A; 1S0C A; 1ZL6 A; 2ETF A; 4ELC A; 3BOO A; 2ISG A; 3K3Q B; 4KS6 A; 2IMC A; 1F31 A; 1ZB7 A; 3DEB A; 1XTF A; 1ZKW A; 2W2D A; 3C88 A; 1ZL5 A; 4EL4 A; 2G7Q A; 3NF3 A; 3V0B B; 4ZKT B; 3ZUR A; 3FIE A; 2ILP A; 3DS9 A; 3BTA A; 2NYY A; 3DDA A; 1I1E A; 1G9B A; 1F82 A; 3DDB A; 1ZN3 A; 3C8A A; 3BON A; 2G7N A; 3QJ0 A; 2IMA A; 3V0A A; 2ISE A; 3D3X A; 1S0B A; 5BQN A; 4KTX A; 2A97 A; 3BOK A; 2XHL A; 2NZ9 A; 1T3C A; 4HEV A; 1YVG A; 3QIY A; 3V0B A; 1S0G A;
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