2NUD | Genus

Total Genus 96

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	96
sequence length	296
structure length	291
Chain Sequence	FRALPGPSQRQLEVYDQCLIGAARWPDDKSNTPENRAYCQSMYNSIRSAGDEISRGGITSFEELWGRATEWRLSKLEPLYSAFASERTSDTDAVTPLVKPYKSVLARVVDHEDAHDEIMQDNLFGDLNVKVYRQTAYLHGNVIPLNTFRVATDTEYLRDRVAHLRTELGAKALKQHLQRYNPDRIDHTNASYLPIIKDHLNDLYRQAISSDLSQAELISLIARTHWWAASAMPDQRGSAAKAEFAARAIASAHGIELPPFRNGNVSDIEAMLSGEEEFVEKYRSLLDSDCF

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Toxin/protein binding
source organism	Pseudomonas syringae pv. glycinea
publication title	Type III Effector Activation via Nucleotide Binding, Phosphorylation, and Host Target Interaction. pubmed doi rcsb
molecule keywords	Avirulence B protein
total genus	96
structure length	291
sequence length	296
chains with identical sequence	B
ec nomenclature
pdb deposition date	2006-11-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF05394	AvrB_AvrC	Avirulence protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3290.20	Mainly Alpha	Orthogonal Bundle	Fic-like fold	Fic-like fold	2nudA01

1NH1A 2NUDA 2NUNA
chains in the Genus database with same CATH superfamily

4XI8A 3N3UA 5JJ6A 3SE5A 2F6SA 2NUNA 5CGLA 4U0UA 4U04A 3ZCBA 4U0SA 5EU0A 4WGJA 4N67A 5CMTA 1NH1A 3ZC7A 2VY3A 5JFFA 5CKLA 5JJ7A 4M16A 3S6AA 4NPSA 3CUCA 3LETA 4X2DA 4ITRA 4LU4A 3ZLMA 4X2EA 4U0ZA 4U07A 5JFZA 4X2CA 3SHGA 4PY3A 2VZAA 2JK8A 2NUDA 2G03A 3SN9A
chains in the Genus database with same CATH topology

1NH1A 2NUDA 2NUNA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1NH1 A;  2NUD A;  2NUN A; 
#chains in the Genus database with same CATH topology
 4XI8 A;  3N3U A;  5JJ6 A;  3SE5 A;  2F6S A;  2NUN A;  5CGL A;  4U0U A;  4U04 A;  3ZCB A;  4U0S A;  5EU0 A;  4WGJ A;  4N67 A;  5CMT A;  1NH1 A;  3ZC7 A;  2VY3 A;  5JFF A;  5CKL A;  5JJ7 A;  4M16 A;  3S6A A;  4NPS A;  3CUC A;  3LET A;  4X2D A;  4ITR A;  4LU4 A;  3ZLM A;  4X2E A;  4U0Z A;  4U07 A;  5JFZ A;  4X2C A;  3SHG A;  4PY3 A;  2VZA A;  2JK8 A;  2NUD A;  2G03 A;  3SN9 A; 
#chains in the Genus database with same CATH homology
 1NH1 A;  2NUD A;  2NUN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2NUDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations