3BOKA

Structure of the c. botulinum neurotoxin serotype a apo-enzyme
Total Genus 148
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
423
structure length
416
Chain Sequence
MQFVNKQFNYKDPVNGVDIAYIKIPQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPQVPVSYYDSTYLSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQFECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHRLYGIAINPNRVFKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNLRNTNLAANFNGQNTEINNMNFTKLKNFTGLF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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connected with : NaN
molecule tags Toxin
source organism Clostridium botulinum
publication title Catalytic features of the botulinum neurotoxin A light chain revealed by high resolution structure of an inhibitory peptide complex.
pubmed doi rcsb
molecule keywords Neurotoxin A
total genus 148
structure length 416
sequence length 423
ec nomenclature ec 3.4.24.69: Bontoxilysin.
pdb deposition date 2007-12-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1240.10 Alpha Beta Alpha-Beta Complex Zincin-like Metalloproteases ("zincins"), catalytic domain like 3bokA00
1XTFA 3DEBA 3ZUQA 3DDBA 3QW8A 2ETFA 1F31A 2FPQA 3V0AB 4J1LA 1ZKXA 3QJ0A 2G7KA 2IMAA 2G7QA 4ZJXA 1ZL6A 3BWIA 1XTGA 3K3QB 3NF3A 1T3CA 3QW7A 1S0CA 2NZ9A 1ZN3A 1S0FA 2G7PA 3BONA 4ZKTB 3BOOA 4ELCA 1S0GA 3C8BA 1G9DA 3V0AA 2XHLA 3DS9A 3ZURA 2G7NA 1S0EA 3DDAA 3FIIA 3FFZA 5BQNA 3BOKA 2IMCA 2QN0A 2ISGA 2NP0A 3VUOA 1F82A 1I1EA 1ZB7A 3ZUSA 1T3AA 1ZKWA 4EJ5A 4HEVA 1S0BA 1ZL5A 2ISHA 1YVGA 1EPWA 1S0DA 3QIZA 3V0BB 3QW5A 3FIEA 3BTAA 4KTXA 3D3XA 3C88A 1Z7HA 2A97A 2ISEA 2ILPA 1G9BA 1G9CA 1E1HA 3QIXA 2NYYA 4KS6A 1G9AA 5BQMA 2IMBA 3DSEA 2W2DA 4KUFA 3QW6A 3C89A 4EL4A 3C8AA 3V0BA 2A8AA 3QIYA
chains in the Genus database with same CATH superfamily
1XTFA 3DEBA 3ZUQA 3DDBA 3QW8A 2ETFA 1F31A 2FPQA 3V0AB 4J1LA 1ZKXA 3QJ0A 2G7KA 2IMAA 2G7QA 4ZJXA 1ZL6A 3BWIA 1XTGA 3K3QB 3NF3A 1T3CA 3QW7A 1S0CA 2NZ9A 1ZN3A 1S0FA 3E11A 2G7PA 3BONA 4ZKTB 3BOOA 4ELCA 4JIUA 1S0GA 3C8BA 1G9DA 3V0AA 2XHLA 3DS9A 2EJQA 3ZURA 2G7NA 1S0EA 3DDAA 3FIIA 3FFZA 5BQNA 3BOKA 2IMCA 2QN0A 2ISGA 2NP0A 3VUOA 1F82A 1I1EA 1ZB7A 2YPTA 3ZUSA 1T3AA 1ZKWA 4EJ5A 4HEVA 1S0BA 1ZL5A 2ISHA 1YVGA 4JIXA 1EPWA 1S0DA 3QIZA 3V0BB 3CQBA 3QW5A 3FIEA 3BTAA 4KTXA 4QHFA 3D3XA 3C88A 1Z7HA 2A97A 2ISEA 2ILPA 1G9BA 1G9CA 1E1HA 3QIXA 2NYYA 4KS6A 1G9AA 2IMBA 3DSEA 4IL3A 5BQMA 4AW6A 2W2DA 3QW6A 4KUFA 3C89A 4EL4A 3C8AA 3V0BA 2A8AA 3QIYA
chains in the Genus database with same CATH topology
1XTFA 3DEBA 3ZUQA 3DDBA 3QW8A 2ETFA 1F31A 2FPQA 3V0AB 4J1LA 1ZKXA 3QJ0A 2G7KA 2IMAA 2G7QA 4ZJXA 1ZL6A 3BWIA 1XTGA 3K3QB 3NF3A 1T3CA 3QW7A 1S0CA 2NZ9A 1ZN3A 1S0FA 2G7PA 3BONA 4ZKTB 3BOOA 4ELCA 1S0GA 3C8BA 1G9DA 3V0AA 2XHLA 3DS9A 3ZURA 2G7NA 1S0EA 3DDAA 3FIIA 3FFZA 5BQNA 3BOKA 2IMCA 2QN0A 2ISGA 2NP0A 3VUOA 1F82A 1I1EA 1ZB7A 3ZUSA 1T3AA 1ZKWA 4EJ5A 4HEVA 1S0BA 1ZL5A 2ISHA 1YVGA 1EPWA 1S0DA 3QIZA 3V0BB 3QW5A 3FIEA 3BTAA 4KTXA 3D3XA 3C88A 1Z7HA 2A97A 2ISEA 2ILPA 1G9BA 1G9CA 1E1HA 3QIXA 2NYYA 4KS6A 1G9AA 5BQMA 2IMBA 3DSEA 2W2DA 4KUFA 3QW6A 3C89A 4EL4A 3C8AA 3V0BA 2A8AA 3QIYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XTF A;  3DEB A;  3ZUQ A;  3DDB A;  3QW8 A;  2ETF A;  1F31 A;  2FPQ A;  3V0A B;  4J1L A;  1ZKX A;  3QJ0 A;  2G7K A;  2IMA A;  2G7Q A;  4ZJX A;  1ZL6 A;  3BWI A;  1XTG A;  3K3Q B;  3NF3 A;  1T3C A;  3QW7 A;  1S0C A;  2NZ9 A;  1ZN3 A;  1S0F A;  2G7P A;  3BON A;  4ZKT B;  3BOO A;  4ELC A;  1S0G A;  3C8B A;  1G9D A;  3V0A A;  2XHL A;  3DS9 A;  3ZUR A;  2G7N A;  1S0E A;  3DDA A;  3FII A;  3FFZ A;  5BQN A;  3BOK A;  2IMC A;  2QN0 A;  2ISG A;  2NP0 A;  3VUO A;  1F82 A;  1I1E A;  1ZB7 A;  3ZUS A;  1T3A A;  1ZKW A;  4EJ5 A;  4HEV A;  1S0B A;  1ZL5 A;  2ISH A;  1YVG A;  1EPW A;  1S0D A;  3QIZ A;  3V0B B;  3QW5 A;  3FIE A;  3BTA A;  4KTX A;  3D3X A;  3C88 A;  1Z7H A;  2A97 A;  2ISE A;  2ILP A;  1G9B A;  1G9C A;  1E1H A;  3QIX A;  2NYY A;  4KS6 A;  1G9A A;  5BQM A;  2IMB A;  3DSE A;  2W2D A;  4KUF A;  3QW6 A;  3C89 A;  4EL4 A;  3C8A A;  3V0B A;  2A8A A;  3QIY A; 
#chains in the Genus database with same CATH topology
 1XTF A;  3DEB A;  3ZUQ A;  3DDB A;  3QW8 A;  2ETF A;  1F31 A;  2FPQ A;  3V0A B;  4J1L A;  1ZKX A;  3QJ0 A;  2G7K A;  2IMA A;  2G7Q A;  4ZJX A;  1ZL6 A;  3BWI A;  1XTG A;  3K3Q B;  3NF3 A;  1T3C A;  3QW7 A;  1S0C A;  2NZ9 A;  1ZN3 A;  1S0F A;  3E11 A;  2G7P A;  3BON A;  4ZKT B;  3BOO A;  4ELC A;  4JIU A;  1S0G A;  3C8B A;  1G9D A;  3V0A A;  2XHL A;  3DS9 A;  2EJQ A;  3ZUR A;  2G7N A;  1S0E A;  3DDA A;  3FII A;  3FFZ A;  5BQN A;  3BOK A;  2IMC A;  2QN0 A;  2ISG A;  2NP0 A;  3VUO A;  1F82 A;  1I1E A;  1ZB7 A;  2YPT A;  3ZUS A;  1T3A A;  1ZKW A;  4EJ5 A;  4HEV A;  1S0B A;  1ZL5 A;  2ISH A;  1YVG A;  4JIX A;  1EPW A;  1S0D A;  3QIZ A;  3V0B B;  3CQB A;  3QW5 A;  3FIE A;  3BTA A;  4KTX A;  4QHF A;  3D3X A;  3C88 A;  1Z7H A;  2A97 A;  2ISE A;  2ILP A;  1G9B A;  1G9C A;  1E1H A;  3QIX A;  2NYY A;  4KS6 A;  1G9A A;  2IMB A;  3DSE A;  4IL3 A;  5BQM A;  4AW6 A;  2W2D A;  3QW6 A;  4KUF A;  3C89 A;  4EL4 A;  3C8A A;  3V0B A;  2A8A A;  3QIY A; 
#chains in the Genus database with same CATH homology
 1XTF A;  3DEB A;  3ZUQ A;  3DDB A;  3QW8 A;  2ETF A;  1F31 A;  2FPQ A;  3V0A B;  4J1L A;  1ZKX A;  3QJ0 A;  2G7K A;  2IMA A;  2G7Q A;  4ZJX A;  1ZL6 A;  3BWI A;  1XTG A;  3K3Q B;  3NF3 A;  1T3C A;  3QW7 A;  1S0C A;  2NZ9 A;  1ZN3 A;  1S0F A;  2G7P A;  3BON A;  4ZKT B;  3BOO A;  4ELC A;  1S0G A;  3C8B A;  1G9D A;  3V0A A;  2XHL A;  3DS9 A;  3ZUR A;  2G7N A;  1S0E A;  3DDA A;  3FII A;  3FFZ A;  5BQN A;  3BOK A;  2IMC A;  2QN0 A;  2ISG A;  2NP0 A;  3VUO A;  1F82 A;  1I1E A;  1ZB7 A;  3ZUS A;  1T3A A;  1ZKW A;  4EJ5 A;  4HEV A;  1S0B A;  1ZL5 A;  2ISH A;  1YVG A;  1EPW A;  1S0D A;  3QIZ A;  3V0B B;  3QW5 A;  3FIE A;  3BTA A;  4KTX A;  3D3X A;  3C88 A;  1Z7H A;  2A97 A;  2ISE A;  2ILP A;  1G9B A;  1G9C A;  1E1H A;  3QIX A;  2NYY A;  4KS6 A;  1G9A A;  5BQM A;  2IMB A;  3DSE A;  2W2D A;  4KUF A;  3QW6 A;  3C89 A;  4EL4 A;  3C8A A;  3V0B A;  2A8A A;  3QIY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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