3BOOA

Structure of the c. botulinum neurotoxin serotype a with an inhibitory peptide bound
Total Genus 143
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
425
structure length
419
Chain Sequence
MQFVNKQFNYKDPVNGVDIAYIKIPNVGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPVPVSYYDSTYLSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQFECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHRLYGIAINPNRVFKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNLRNTNLAANFNGQNTEINNMNFTKLKNFTGLFEF
50100150200250300350400400300200100
020406080100120140Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Toxin/toxin inhibitor
source organism Clostridium botulinum
publication title Catalytic features of the botulinum neurotoxin A light chain revealed by high resolution structure of an inhibitory peptide complex.
pubmed doi rcsb
molecule keywords Neurotoxin A
total genus 143
structure length 419
sequence length 425
ec nomenclature ec 3.4.24.69: Bontoxilysin.
pdb deposition date 2007-12-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1240.10 Alpha Beta Alpha-Beta Complex Zincin-like Metalloproteases ("zincins"), catalytic domain like 3booA00
3DS9A 3DSEA 1ZKXA 1ZN3A 4EL4A 2ILPA 3V0AB 3BONA 4ZJXA 3C89A 3QW5A 3FIEA 2G7PA 3C8BA 1F31A 1F82A 3D3XA 2W2DA 3BOKA 5BQNA 3C88A 4ELCA 3BWIA 2A97A 2ISEA 3DDBA 1Z7HA 3V0AA 3QIZA 2NYYA 3DDAA 2ISGA 3QIXA 3QW7A 1ZL5A 2A8AA 2IMCA 1EPWA 3QW6A 2XHLA 2ETFA 4KTXA 3C8AA 1G9AA 2IMBA 1G9CA 4KUFA 1S0CA 4KS6A 3BTAA 4J1LA 3ZUQA 1I1EA 1S0EA 4HEVA 1G9DA 1S0FA 3V0BA 1S0BA 3V0BB 3VUOA 5BQMA 2G7QA 4EJ5A 2IMAA 1S0DA 4ZKTB 3QJ0A 1XTGA 1G9BA 2G7NA 1ZKWA 3QIYA 3BOOA 1YVGA 1ZB7A 3ZURA 2FPQA 1T3AA 3QW8A 2NP0A 1E1HA 3NF3A 3FFZA 3FIIA 1T3CA 1ZL6A 3DEBA 2G7KA 3ZUSA 2ISHA 1S0GA 1XTFA 3K3QB 2NZ9A 2QN0A
chains in the Genus database with same CATH superfamily
3DS9A 3DSEA 1ZKXA 1ZN3A 4EL4A 2ILPA 3V0AB 3BONA 4ZJXA 3C89A 3QW5A 4JIXA 3FIEA 4JIUA 2G7PA 3C8BA 1F31A 1F82A 3D3XA 2W2DA 3BOKA 4QHFA 3C88A 5BQNA 4ELCA 3CQBA 4AW6A 3BWIA 2A97A 2ISEA 3DDBA 1Z7HA 3V0AA 3QIZA 2NYYA 3DDAA 2ISGA 3QIXA 3QW7A 1ZL5A 2A8AA 2IMCA 2YPTA 1EPWA 3QW6A 2XHLA 2ETFA 4KTXA 3C8AA 1G9AA 2IMBA 1G9CA 4KUFA 1S0CA 3E11A 4KS6A 3BTAA 4J1LA 3ZUQA 1I1EA 1S0EA 4HEVA 1G9DA 1S0FA 3V0BA 1S0BA 3V0BB 3VUOA 5BQMA 2G7QA 4EJ5A 2IMAA 1S0DA 4ZKTB 3QJ0A 1XTGA 4IL3A 1G9BA 2G7NA 1ZKWA 3QIYA 3BOOA 1YVGA 1ZB7A 3ZURA 2FPQA 1T3AA 3QW8A 2NP0A 2EJQA 1E1HA 3NF3A 3FFZA 3FIIA 1T3CA 1ZL6A 3DEBA 2G7KA 3ZUSA 2ISHA 1S0GA 1XTFA 3K3QB 2NZ9A 2QN0A
chains in the Genus database with same CATH topology
3DS9A 3DSEA 1ZKXA 1ZN3A 4EL4A 2ILPA 3V0AB 3BONA 4ZJXA 3C89A 3QW5A 3FIEA 2G7PA 3C8BA 1F31A 1F82A 3D3XA 2W2DA 3BOKA 5BQNA 3C88A 4ELCA 3BWIA 2A97A 2ISEA 3DDBA 1Z7HA 3V0AA 3QIZA 2NYYA 3DDAA 2ISGA 3QIXA 3QW7A 1ZL5A 2A8AA 2IMCA 1EPWA 3QW6A 2XHLA 2ETFA 4KTXA 3C8AA 1G9AA 2IMBA 1G9CA 4KUFA 1S0CA 4KS6A 3BTAA 4J1LA 3ZUQA 1I1EA 1S0EA 4HEVA 1G9DA 1S0FA 3V0BA 1S0BA 3V0BB 3VUOA 5BQMA 2G7QA 4EJ5A 2IMAA 1S0DA 4ZKTB 3QJ0A 1XTGA 1G9BA 2G7NA 1ZKWA 3QIYA 3BOOA 1YVGA 1ZB7A 3ZURA 2FPQA 1T3AA 3QW8A 2NP0A 1E1HA 3NF3A 3FFZA 3FIIA 1T3CA 1ZL6A 3DEBA 2G7KA 3ZUSA 2ISHA 1S0GA 1XTFA 3K3QB 2NZ9A 2QN0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DS9 A;  3DSE A;  1ZKX A;  1ZN3 A;  4EL4 A;  2ILP A;  3V0A B;  3BON A;  4ZJX A;  3C89 A;  3QW5 A;  3FIE A;  2G7P A;  3C8B A;  1F31 A;  1F82 A;  3D3X A;  2W2D A;  3BOK A;  5BQN A;  3C88 A;  4ELC A;  3BWI A;  2A97 A;  2ISE A;  3DDB A;  1Z7H A;  3V0A A;  3QIZ A;  2NYY A;  3DDA A;  2ISG A;  3QIX A;  3QW7 A;  1ZL5 A;  2A8A A;  2IMC A;  1EPW A;  3QW6 A;  2XHL A;  2ETF A;  4KTX A;  3C8A A;  1G9A A;  2IMB A;  1G9C A;  4KUF A;  1S0C A;  4KS6 A;  3BTA A;  4J1L A;  3ZUQ A;  1I1E A;  1S0E A;  4HEV A;  1G9D A;  1S0F A;  3V0B A;  1S0B A;  3V0B B;  3VUO A;  5BQM A;  2G7Q A;  4EJ5 A;  2IMA A;  1S0D A;  4ZKT B;  3QJ0 A;  1XTG A;  1G9B A;  2G7N A;  1ZKW A;  3QIY A;  3BOO A;  1YVG A;  1ZB7 A;  3ZUR A;  2FPQ A;  1T3A A;  3QW8 A;  2NP0 A;  1E1H A;  3NF3 A;  3FFZ A;  3FII A;  1T3C A;  1ZL6 A;  3DEB A;  2G7K A;  3ZUS A;  2ISH A;  1S0G A;  1XTF A;  3K3Q B;  2NZ9 A;  2QN0 A; 
#chains in the Genus database with same CATH topology
 3DS9 A;  3DSE A;  1ZKX A;  1ZN3 A;  4EL4 A;  2ILP A;  3V0A B;  3BON A;  4ZJX A;  3C89 A;  3QW5 A;  4JIX A;  3FIE A;  4JIU A;  2G7P A;  3C8B A;  1F31 A;  1F82 A;  3D3X A;  2W2D A;  3BOK A;  4QHF A;  3C88 A;  5BQN A;  4ELC A;  3CQB A;  4AW6 A;  3BWI A;  2A97 A;  2ISE A;  3DDB A;  1Z7H A;  3V0A A;  3QIZ A;  2NYY A;  3DDA A;  2ISG A;  3QIX A;  3QW7 A;  1ZL5 A;  2A8A A;  2IMC A;  2YPT A;  1EPW A;  3QW6 A;  2XHL A;  2ETF A;  4KTX A;  3C8A A;  1G9A A;  2IMB A;  1G9C A;  4KUF A;  1S0C A;  3E11 A;  4KS6 A;  3BTA A;  4J1L A;  3ZUQ A;  1I1E A;  1S0E A;  4HEV A;  1G9D A;  1S0F A;  3V0B A;  1S0B A;  3V0B B;  3VUO A;  5BQM A;  2G7Q A;  4EJ5 A;  2IMA A;  1S0D A;  4ZKT B;  3QJ0 A;  1XTG A;  4IL3 A;  1G9B A;  2G7N A;  1ZKW A;  3QIY A;  3BOO A;  1YVG A;  1ZB7 A;  3ZUR A;  2FPQ A;  1T3A A;  3QW8 A;  2NP0 A;  2EJQ A;  1E1H A;  3NF3 A;  3FFZ A;  3FII A;  1T3C A;  1ZL6 A;  3DEB A;  2G7K A;  3ZUS A;  2ISH A;  1S0G A;  1XTF A;  3K3Q B;  2NZ9 A;  2QN0 A; 
#chains in the Genus database with same CATH homology
 3DS9 A;  3DSE A;  1ZKX A;  1ZN3 A;  4EL4 A;  2ILP A;  3V0A B;  3BON A;  4ZJX A;  3C89 A;  3QW5 A;  3FIE A;  2G7P A;  3C8B A;  1F31 A;  1F82 A;  3D3X A;  2W2D A;  3BOK A;  5BQN A;  3C88 A;  4ELC A;  3BWI A;  2A97 A;  2ISE A;  3DDB A;  1Z7H A;  3V0A A;  3QIZ A;  2NYY A;  3DDA A;  2ISG A;  3QIX A;  3QW7 A;  1ZL5 A;  2A8A A;  2IMC A;  1EPW A;  3QW6 A;  2XHL A;  2ETF A;  4KTX A;  3C8A A;  1G9A A;  2IMB A;  1G9C A;  4KUF A;  1S0C A;  4KS6 A;  3BTA A;  4J1L A;  3ZUQ A;  1I1E A;  1S0E A;  4HEV A;  1G9D A;  1S0F A;  3V0B A;  1S0B A;  3V0B B;  3VUO A;  5BQM A;  2G7Q A;  4EJ5 A;  2IMA A;  1S0D A;  4ZKT B;  3QJ0 A;  1XTG A;  1G9B A;  2G7N A;  1ZKW A;  3QIY A;  3BOO A;  1YVG A;  1ZB7 A;  3ZUR A;  2FPQ A;  1T3A A;  3QW8 A;  2NP0 A;  1E1H A;  3NF3 A;  3FFZ A;  3FII A;  1T3C A;  1ZL6 A;  3DEB A;  2G7K A;  3ZUS A;  2ISH A;  1S0G A;  1XTF A;  3K3Q B;  2NZ9 A;  2QN0 A; 
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similar chains in the Genus database (?% sequence similarity)
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