3C88 | Genus

Total Genus 137

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	137
sequence length	422
structure length	422
Chain Sequence	PFVNKQFNYKDPVNGVDIAYIKIPNAGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPPEAKQVPVSYYDSTYLSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQFECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHRLYGIAINPNRVFKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNLRNTNLAANFNGQNTEINNMNFTKLKNFTGLF

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Hydrolase/hydrolase inhibitor
source organism	Clostridium botulinum
publication title	Structure- and Substrate-based Inhibitor Design for Clostridium botulinum Neurotoxin Serotype A pubmed doi rcsb
molecule keywords	Botulinum neurotoxin A light chain
total genus	137
structure length	422
sequence length	422
ec nomenclature	ec 3.4.24.69: Bontoxilysin.
pdb deposition date	2008-02-11

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.1240.10	Alpha Beta	Alpha-Beta Complex	Zincin-like	Metalloproteases ("zincins"), catalytic domain like	3c88A00

1ZB7A 1ZKWA 2FPQA 3QW7A 3DDBA 3BOOA 2NZ9A 3ZURA 3QIYA 3QIZA 2NYYA 3FIIA 3FFZA 1S0BA 4KS6A 2ISGA 1T3CA 1XTFA 3C89A 3D3XA 5BQNA 3QIXA 1S0GA 3BONA 1S0FA 4ZKTB 2QN0A 3V0AA 1YVGA 1S0DA 2W2DA 2XHLA 1I1EA 5BQMA 2IMBA 3DEBA 3V0AB 4ZJXA 2A97A 3C88A 2G7KA 2ETFA 1G9BA 1T3AA 3BWIA 3V0BA 3C8BA 1ZKXA 2ILPA 3DS9A 1Z7HA 1ZL6A 1S0CA 3V0BB 2IMAA 2G7QA 2ISHA 3QW6A 3ZUSA 2A8AA 4KTXA 3BOKA 4KUFA 3ZUQA 4EL4A 4J1LA 3NF3A 3FIEA 3DDAA 1G9CA 3QJ0A 1E1HA 1F82A 3DSEA 4EJ5A 1ZL5A 1G9DA 3QW8A 1G9AA 3VUOA 3QW5A 4ELCA 1ZN3A 3K3QB 2ISEA 2G7NA 1EPWA 2NP0A 2IMCA 3C8AA 2G7PA 1F31A 1XTGA 4HEVA 3BTAA 1S0EA
chains in the Genus database with same CATH superfamily

1ZB7A 1ZKWA 2FPQA 3QW7A 3DDBA 3BOOA 2NZ9A 3ZURA 3QIYA 3QIZA 4JIUA 2NYYA 3FIIA 3FFZA 1S0BA 4KS6A 2ISGA 1T3CA 1XTFA 3C89A 4AW6A 3D3XA 5BQNA 3QIXA 1S0GA 3BONA 1S0FA 2YPTA 4ZKTB 2QN0A 3V0AA 4JIXA 2EJQA 1YVGA 4IL3A 1S0DA 2W2DA 2XHLA 1I1EA 2IMBA 5BQMA 3DEBA 3V0AB 4ZJXA 2A97A 3C88A 2G7KA 2ETFA 1G9BA 4QHFA 1T3AA 3BWIA 3V0BA 3C8BA 1ZKXA 2ILPA 3DS9A 1Z7HA 1ZL6A 1S0CA 3V0BB 2IMAA 2G7QA 2ISHA 3QW6A 3ZUSA 2A8AA 4KTXA 3BOKA 4KUFA 3ZUQA 4EL4A 4J1LA 3NF3A 3FIEA 3DDAA 1G9CA 3QJ0A 1E1HA 1F82A 3DSEA 4EJ5A 1ZL5A 1G9DA 3CQBA 3QW8A 1G9AA 3VUOA 3QW5A 4ELCA 3E11A 1ZN3A 3K3QB 2ISEA 2G7NA 1EPWA 2NP0A 2IMCA 3C8AA 2G7PA 1F31A 1XTGA 4HEVA 3BTAA 1S0EA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1ZB7 A;  1ZKW A;  2FPQ A;  3QW7 A;  3DDB A;  3BOO A;  2NZ9 A;  3ZUR A;  3QIY A;  3QIZ A;  2NYY A;  3FII A;  3FFZ A;  1S0B A;  4KS6 A;  2ISG A;  1T3C A;  1XTF A;  3C89 A;  3D3X A;  5BQN A;  3QIX A;  1S0G A;  3BON A;  1S0F A;  4ZKT B;  2QN0 A;  3V0A A;  1YVG A;  1S0D A;  2W2D A;  2XHL A;  1I1E A;  5BQM A;  2IMB A;  3DEB A;  3V0A B;  4ZJX A;  2A97 A;  3C88 A;  2G7K A;  2ETF A;  1G9B A;  1T3A A;  3BWI A;  3V0B A;  3C8B A;  1ZKX A;  2ILP A;  3DS9 A;  1Z7H A;  1ZL6 A;  1S0C A;  3V0B B;  2IMA A;  2G7Q A;  2ISH A;  3QW6 A;  3ZUS A;  2A8A A;  4KTX A;  3BOK A;  4KUF A;  3ZUQ A;  4EL4 A;  4J1L A;  3NF3 A;  3FIE A;  3DDA A;  1G9C A;  3QJ0 A;  1E1H A;  1F82 A;  3DSE A;  4EJ5 A;  1ZL5 A;  1G9D A;  3QW8 A;  1G9A A;  3VUO A;  3QW5 A;  4ELC A;  1ZN3 A;  3K3Q B;  2ISE A;  2G7N A;  1EPW A;  2NP0 A;  2IMC A;  3C8A A;  2G7P A;  1F31 A;  1XTG A;  4HEV A;  3BTA A;  1S0E A; 
#chains in the Genus database with same CATH topology
 1ZB7 A;  1ZKW A;  2FPQ A;  3QW7 A;  3DDB A;  3BOO A;  2NZ9 A;  3ZUR A;  3QIY A;  3QIZ A;  4JIU A;  2NYY A;  3FII A;  3FFZ A;  1S0B A;  4KS6 A;  2ISG A;  1T3C A;  1XTF A;  3C89 A;  4AW6 A;  3D3X A;  5BQN A;  3QIX A;  1S0G A;  3BON A;  1S0F A;  2YPT A;  4ZKT B;  2QN0 A;  3V0A A;  4JIX A;  2EJQ A;  1YVG A;  4IL3 A;  1S0D A;  2W2D A;  2XHL A;  1I1E A;  2IMB A;  5BQM A;  3DEB A;  3V0A B;  4ZJX A;  2A97 A;  3C88 A;  2G7K A;  2ETF A;  1G9B A;  4QHF A;  1T3A A;  3BWI A;  3V0B A;  3C8B A;  1ZKX A;  2ILP A;  3DS9 A;  1Z7H A;  1ZL6 A;  1S0C A;  3V0B B;  2IMA A;  2G7Q A;  2ISH A;  3QW6 A;  3ZUS A;  2A8A A;  4KTX A;  3BOK A;  4KUF A;  3ZUQ A;  4EL4 A;  4J1L A;  3NF3 A;  3FIE A;  3DDA A;  1G9C A;  3QJ0 A;  1E1H A;  1F82 A;  3DSE A;  4EJ5 A;  1ZL5 A;  1G9D A;  3CQB A;  3QW8 A;  1G9A A;  3VUO A;  3QW5 A;  4ELC A;  3E11 A;  1ZN3 A;  3K3Q B;  2ISE A;  2G7N A;  1EPW A;  2NP0 A;  2IMC A;  3C8A A;  2G7P A;  1F31 A;  1XTG A;  4HEV A;  3BTA A;  1S0E A; 
#chains in the Genus database with same CATH homology
 1ZB7 A;  1ZKW A;  2FPQ A;  3QW7 A;  3DDB A;  3BOO A;  2NZ9 A;  3ZUR A;  3QIY A;  3QIZ A;  2NYY A;  3FII A;  3FFZ A;  1S0B A;  4KS6 A;  2ISG A;  1T3C A;  1XTF A;  3C89 A;  3D3X A;  5BQN A;  3QIX A;  1S0G A;  3BON A;  1S0F A;  4ZKT B;  2QN0 A;  3V0A A;  1YVG A;  1S0D A;  2W2D A;  2XHL A;  1I1E A;  5BQM A;  2IMB A;  3DEB A;  3V0A B;  4ZJX A;  2A97 A;  3C88 A;  2G7K A;  2ETF A;  1G9B A;  1T3A A;  3BWI A;  3V0B A;  3C8B A;  1ZKX A;  2ILP A;  3DS9 A;  1Z7H A;  1ZL6 A;  1S0C A;  3V0B B;  2IMA A;  2G7Q A;  2ISH A;  3QW6 A;  3ZUS A;  2A8A A;  4KTX A;  3BOK A;  4KUF A;  3ZUQ A;  4EL4 A;  4J1L A;  3NF3 A;  3FIE A;  3DDA A;  1G9C A;  3QJ0 A;  1E1H A;  1F82 A;  3DSE A;  4EJ5 A;  1ZL5 A;  1G9D A;  3QW8 A;  1G9A A;  3VUO A;  3QW5 A;  4ELC A;  1ZN3 A;  3K3Q B;  2ISE A;  2G7N A;  1EPW A;  2NP0 A;  2IMC A;  3C8A A;  2G7P A;  1F31 A;  1XTG A;  4HEV A;  3BTA A;  1S0E A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3C88A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization