4F1RA

Structure analysis of the global metabolic regulator crc from pseudomonas aeruginos
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
259
structure length
259
Chain Sequence
MRIISVNVNGIQAAAERGLLSWLQAQNADVICLQDTRASAFDLDDPSFQLDGYFLYACDAELPEQGGVALYSRLQPKAVISGLGFETADRYGRYLQADFDKVSIATLLLPSGQSGDESLNQKFKFMDDFTHYLSKQRRKRREYIYCGSLYVAHQKMDVKNWRECQQMPGFLAPERAWLDEVFGNLGYADALREVSREGDQFSWWPDSEQAEMLNLGWRFDYQVLTPGLRRFVRNAKLPRQPRFSQHAPLIVDYDWQLSI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription regulator
molecule keywords Catabolite repression control protein
publication title Structure analysis of the global metabolic regulator Crc from Pseudomonas aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 81
structure length 259
sequence length 259
ec nomenclature
pdb deposition date 2012-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.10.10 Alpha Beta 4-Layer Sandwich Deoxyribonuclease I; Chain A Endonuclease/exonuclease/phosphatase 4f1rA00
4L21A 5J42A 3NGQA 3GA6A 5J8NA 4A9CA 5EWTA 5INPA 5DV4A 4F1RA 3FZIA 4B5HA 1SR4B 3NR8A 1I9YA 3I46A 1NTFA 1Y21A 1VYBA 2D1KB 2V0RA 3G4TA 4L1ZA 3I5VA 5J3ZA 4B5IA 4FVAA 4B5GA 4QH9A 3W2YA 2DDTA 3G8VA 1HD7A 5INLA 2F1NA 4B5JA 5DFFA 5J3SA 5A7JA 3G3YA 3G0RA 3G3CA 2DDRA 3I41A 2A3ZB 4IEMA 4GZ2A 2IMQX 5CFGA 1I9ZA 3G2CA 4AWNA 1E9NA 3G00A 3K55A 1DE8A 3U8UA 4GEWA 1BIXA 2J63A 4JG3A 4PUQA 4FPVA 4GYZA 5DV2A 4B5MA 5INOA 3MTCA 1DEWA 2VOAA 1DE9A 3G91A 4CMLA 2DDSA 4F1IA 3W2XA 2EI9A 4K6LF 4L20A 2O3HA 2A40B 5INNA 5J3PA 5DG0A 3L1WA 4GZ1A 3DNIA 4CMNA 5DFHA 4F1HB 2DNJA 3MPRA 2O3CA 2XSWA 3G2DA 3WCXA 2JC5A 1DNKA 2F2FB 5INMA 3G0AA 4QHDA 1ATND 2A41B 3NGOA 4F1HA 2V0SA 3W3DB 4RUWA 1WDUA 3G1KA 3G6SA 5INQA 3G38A 2A42B 2UYRX 1SI6X 2ISIA 3N9VA 4C1RA 5DFIA 5DFJA 2JC4A 5INKA 3I48A 4LNDA 4L1YA 3CJCD 5HT2A 5CFEA 1YJHA 1AKOA 5A7IA 4B5FA 3TEBA 4GZ0A 4QHEA 1ZWXA 3NGNA
chains in the Genus database with same CATH superfamily
4L21A 5J42A 3NGQA 3GA6A 5J8NA 4A9CA 5EWTA 5INPA 5DV4A 4F1RA 3FZIA 4B5HA 1SR4B 3NR8A 1I9YA 3I46A 1NTFA 1Y21A 1VYBA 2D1KB 2V0RA 3G4TA 4L1ZA 3I5VA 5J3ZA 4B5IA 4FVAA 4B5GA 4QH9A 3W2YA 2DDTA 3G8VA 1HD7A 5INLA 2F1NA 4B5JA 5DFFA 5J3SA 5A7JA 3G3YA 3G0RA 3G3CA 2DDRA 3I41A 2A3ZB 4IEMA 4GZ2A 2IMQX 5CFGA 1I9ZA 3G2CA 4AWNA 1E9NA 3G00A 3K55A 1DE8A 3U8UA 4GEWA 1BIXA 2J63A 4JG3A 4PUQA 4FPVA 4GYZA 5DV2A 4B5MA 5INOA 3MTCA 1DEWA 2VOAA 1DE9A 3G91A 4CMLA 2DDSA 4F1IA 3W2XA 2EI9A 4K6LF 4L20A 2O3HA 2A40B 5INNA 5J3PA 5DG0A 3L1WA 4GZ1A 3DNIA 4CMNA 5DFHA 4F1HB 2DNJA 3MPRA 2O3CA 2XSWA 3G2DA 3WCXA 2JC5A 1DNKA 2F2FB 5INMA 3G0AA 4QHDA 1ATND 2A41B 3NGOA 4F1HA 2V0SA 3W3DB 4RUWA 1WDUA 3G1KA 3G6SA 5INQA 3G38A 2A42B 2UYRX 1SI6X 2ISIA 3N9VA 4C1RA 5DFIA 5DFJA 2JC4A 5INKA 3I48A 4LNDA 4L1YA 3CJCD 5HT2A 5CFEA 1YJHA 1AKOA 5A7IA 4B5FA 3TEBA 4GZ0A 4QHEA 1ZWXA 3NGNA
chains in the Genus database with same CATH topology
4L21A 5J42A 3NGQA 3GA6A 5J8NA 4A9CA 5EWTA 5INPA 5DV4A 4F1RA 3FZIA 4B5HA 1SR4B 3NR8A 1I9YA 3I46A 1NTFA 1Y21A 1VYBA 2D1KB 2V0RA 3G4TA 4L1ZA 3I5VA 5J3ZA 4B5IA 4FVAA 4B5GA 4QH9A 3W2YA 2DDTA 3G8VA 1HD7A 5INLA 2F1NA 4B5JA 5DFFA 5J3SA 5A7JA 3G3YA 3G0RA 3G3CA 2DDRA 3I41A 2A3ZB 4IEMA 4GZ2A 2IMQX 5CFGA 1I9ZA 3G2CA 4AWNA 1E9NA 3G00A 3K55A 1DE8A 3U8UA 4GEWA 1BIXA 2J63A 4JG3A 4PUQA 4FPVA 4GYZA 5DV2A 4B5MA 5INOA 3MTCA 1DEWA 2VOAA 1DE9A 3G91A 4CMLA 2DDSA 4F1IA 3W2XA 2EI9A 4K6LF 4L20A 2O3HA 2A40B 5INNA 5J3PA 5DG0A 3L1WA 4GZ1A 3DNIA 4CMNA 5DFHA 4F1HB 2DNJA 3MPRA 2O3CA 2XSWA 3G2DA 3WCXA 2JC5A 1DNKA 2F2FB 5INMA 3G0AA 4QHDA 1ATND 2A41B 3NGOA 4F1HA 2V0SA 3W3DB 4RUWA 1WDUA 3G1KA 3G6SA 5INQA 3G38A 2A42B 2UYRX 1SI6X 2ISIA 3N9VA 4C1RA 5DFIA 5DFJA 2JC4A 5INKA 3I48A 4LNDA 4L1YA 3CJCD 5HT2A 5CFEA 1YJHA 1AKOA 5A7IA 4B5FA 3TEBA 4GZ0A 4QHEA 1ZWXA 3NGNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L21 A;  5J42 A;  3NGQ A;  3GA6 A;  5J8N A;  4A9C A;  5EWT A;  5INP A;  5DV4 A;  4F1R A;  3FZI A;  4B5H A;  1SR4 B;  3NR8 A;  1I9Y A;  3I46 A;  1NTF A;  1Y21 A;  1VYB A;  2D1K B;  2V0R A;  3G4T A;  4L1Z A;  3I5V A;  5J3Z A;  4B5I A;  4FVA A;  4B5G A;  4QH9 A;  3W2Y A;  2DDT A;  3G8V A;  1HD7 A;  5INL A;  2F1N A;  4B5J A;  5DFF A;  5J3S A;  5A7J A;  3G3Y A;  3G0R A;  3G3C A;  2DDR A;  3I41 A;  2A3Z B;  4IEM A;  4GZ2 A;  2IMQ X;  5CFG A;  1I9Z A;  3G2C A;  4AWN A;  1E9N A;  3G00 A;  3K55 A;  1DE8 A;  3U8U A;  4GEW A;  1BIX A;  2J63 A;  4JG3 A;  4PUQ A;  4FPV A;  4GYZ A;  5DV2 A;  4B5M A;  5INO A;  3MTC A;  1DEW A;  2VOA A;  1DE9 A;  3G91 A;  4CML A;  2DDS A;  4F1I A;  3W2X A;  2EI9 A;  4K6L F;  4L20 A;  2O3H A;  2A40 B;  5INN A;  5J3P A;  5DG0 A;  3L1W A;  4GZ1 A;  3DNI A;  4CMN A;  5DFH A;  4F1H B;  2DNJ A;  3MPR A;  2O3C A;  2XSW A;  3G2D A;  3WCX A;  2JC5 A;  1DNK A;  2F2F B;  5INM A;  3G0A A;  4QHD A;  1ATN D;  2A41 B;  3NGO A;  4F1H A;  2V0S A;  3W3D B;  4RUW A;  1WDU A;  3G1K A;  3G6S A;  5INQ A;  3G38 A;  2A42 B;  2UYR X;  1SI6 X;  2ISI A;  3N9V A;  4C1R A;  5DFI A;  5DFJ A;  2JC4 A;  5INK A;  3I48 A;  4LND A;  4L1Y A;  3CJC D;  5HT2 A;  5CFE A;  1YJH A;  1AKO A;  5A7I A;  4B5F A;  3TEB A;  4GZ0 A;  4QHE A;  1ZWX A;  3NGN A; 
#chains in the Genus database with same CATH topology
 4L21 A;  5J42 A;  3NGQ A;  3GA6 A;  5J8N A;  4A9C A;  5EWT A;  5INP A;  5DV4 A;  4F1R A;  3FZI A;  4B5H A;  1SR4 B;  3NR8 A;  1I9Y A;  3I46 A;  1NTF A;  1Y21 A;  1VYB A;  2D1K B;  2V0R A;  3G4T A;  4L1Z A;  3I5V A;  5J3Z A;  4B5I A;  4FVA A;  4B5G A;  4QH9 A;  3W2Y A;  2DDT A;  3G8V A;  1HD7 A;  5INL A;  2F1N A;  4B5J A;  5DFF A;  5J3S A;  5A7J A;  3G3Y A;  3G0R A;  3G3C A;  2DDR A;  3I41 A;  2A3Z B;  4IEM A;  4GZ2 A;  2IMQ X;  5CFG A;  1I9Z A;  3G2C A;  4AWN A;  1E9N A;  3G00 A;  3K55 A;  1DE8 A;  3U8U A;  4GEW A;  1BIX A;  2J63 A;  4JG3 A;  4PUQ A;  4FPV A;  4GYZ A;  5DV2 A;  4B5M A;  5INO A;  3MTC A;  1DEW A;  2VOA A;  1DE9 A;  3G91 A;  4CML A;  2DDS A;  4F1I A;  3W2X A;  2EI9 A;  4K6L F;  4L20 A;  2O3H A;  2A40 B;  5INN A;  5J3P A;  5DG0 A;  3L1W A;  4GZ1 A;  3DNI A;  4CMN A;  5DFH A;  4F1H B;  2DNJ A;  3MPR A;  2O3C A;  2XSW A;  3G2D A;  3WCX A;  2JC5 A;  1DNK A;  2F2F B;  5INM A;  3G0A A;  4QHD A;  1ATN D;  2A41 B;  3NGO A;  4F1H A;  2V0S A;  3W3D B;  4RUW A;  1WDU A;  3G1K A;  3G6S A;  5INQ A;  3G38 A;  2A42 B;  2UYR X;  1SI6 X;  2ISI A;  3N9V A;  4C1R A;  5DFI A;  5DFJ A;  2JC4 A;  5INK A;  3I48 A;  4LND A;  4L1Y A;  3CJC D;  5HT2 A;  5CFE A;  1YJH A;  1AKO A;  5A7I A;  4B5F A;  3TEB A;  4GZ0 A;  4QHE A;  1ZWX A;  3NGN A; 
#chains in the Genus database with same CATH homology
 4L21 A;  5J42 A;  3NGQ A;  3GA6 A;  5J8N A;  4A9C A;  5EWT A;  5INP A;  5DV4 A;  4F1R A;  3FZI A;  4B5H A;  1SR4 B;  3NR8 A;  1I9Y A;  3I46 A;  1NTF A;  1Y21 A;  1VYB A;  2D1K B;  2V0R A;  3G4T A;  4L1Z A;  3I5V A;  5J3Z A;  4B5I A;  4FVA A;  4B5G A;  4QH9 A;  3W2Y A;  2DDT A;  3G8V A;  1HD7 A;  5INL A;  2F1N A;  4B5J A;  5DFF A;  5J3S A;  5A7J A;  3G3Y A;  3G0R A;  3G3C A;  2DDR A;  3I41 A;  2A3Z B;  4IEM A;  4GZ2 A;  2IMQ X;  5CFG A;  1I9Z A;  3G2C A;  4AWN A;  1E9N A;  3G00 A;  3K55 A;  1DE8 A;  3U8U A;  4GEW A;  1BIX A;  2J63 A;  4JG3 A;  4PUQ A;  4FPV A;  4GYZ A;  5DV2 A;  4B5M A;  5INO A;  3MTC A;  1DEW A;  2VOA A;  1DE9 A;  3G91 A;  4CML A;  2DDS A;  4F1I A;  3W2X A;  2EI9 A;  4K6L F;  4L20 A;  2O3H A;  2A40 B;  5INN A;  5J3P A;  5DG0 A;  3L1W A;  4GZ1 A;  3DNI A;  4CMN A;  5DFH A;  4F1H B;  2DNJ A;  3MPR A;  2O3C A;  2XSW A;  3G2D A;  3WCX A;  2JC5 A;  1DNK A;  2F2F B;  5INM A;  3G0A A;  4QHD A;  1ATN D;  2A41 B;  3NGO A;  4F1H A;  2V0S A;  3W3D B;  4RUW A;  1WDU A;  3G1K A;  3G6S A;  5INQ A;  3G38 A;  2A42 B;  2UYR X;  1SI6 X;  2ISI A;  3N9V A;  4C1R A;  5DFI A;  5DFJ A;  2JC4 A;  5INK A;  3I48 A;  4LND A;  4L1Y A;  3CJC D;  5HT2 A;  5CFE A;  1YJH A;  1AKO A;  5A7I A;  4B5F A;  3TEB A;  4GZ0 A;  4QHE A;  1ZWX A;  3NGN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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