1SSLA

Solution structure of the psi domain from the met receptor
Total Genus 4

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
48
structure length
48
Chain Sequence
GSAMGCRHFQSCSQCLSAPPFVQCGWCHDKCVRSEECLSGTWTQQICL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
3H1 (6-8)EMPTYTIV1 (9-12)3H2 (14-16)TI2 (19-22)TIV3 (16-19)O1 (6-24)S1 (25-26)S2 (31-32)O2 (12-47)TIV4 (26-29)3H3 (34-36)TI3 (37-40)TIV5 (27-30)Updating...
connected with : NaN
molecule tags Structural protein
source organism Homo sapiens
publication title Insights into function of PSI domains from structure of the Met receptor PSI domain.
pubmed doi rcsb
molecule keywords Hepatocyte growth factor receptor
total genus 4
structure length 48
sequence length 48
ec nomenclature ec 2.7.10.1: Receptor protein-tyrosine kinase.
pdb deposition date 2004-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01437 PSI Plexin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1680.10 Alpha Beta 2-Layer Sandwich ligand-binding face of the semaphorins, domain 2 ligand-binding face of the semaphorins, domain 2 1sslA00
4Z7QB 4FWWA 1SSLA 2VDNB 2VDMB 3NVQA 2VDLB 1U8CB 3FCUB 3AL8A 3ZDXB 4WK0B 5E6RB 4O3TB 5E6UB 2VDOB 3NIDB 5HDBB 3NIFB 3OL2B 3ZE1B 3ZE2B 4UM9B 1YUKA 2VDKB 4O3UB 3T3MB 3ZDZB 3ZE0B 2VDQB 3NIGB 4UM8B 3VI3B 4Z7OB 3VI4B 4WK4B 3OL2A 4K3JB 5E6SB 1TYEB 1OLZA 2VC2B 4WK2B 2VDRB 3OKWA 4Z7NB 2P26A 3AFCA 3T3PB 3AL9A 4GZ8A 3OKYB 2UZYB 3AL8B 4UM9D 3ZDYB 2VDPB 2P28A 1SHYB 4WJKB
chains in the Genus database with same CATH superfamily
4Z7QB 4FWWA 1SSLA 2VDNB 2JWHA 2VDMB 3NVQA 2VDLB 1U8CB 3FCUB 2JWGA 3AL8A 3ZDXB 4WK0B 5E6RB 4O3TB 5E6UB 2VDOB 3NIDB 5HDBB 3NIFB 3OL2B 3ZE1B 3ZE2B 4UM9B 1YUKA 2VDKB 4O3UB 3T3MB 3ZDZB 3ZE0B 2VDQB 3NIGB 4UM8B 3VI3B 4Z7OB 3VI4B 4WK4B 3OL2A 4K3JB 5E6SB 1TYEB 1OLZA 2VC2B 4WK2B 2VDRB 3OKWA 4Z7NB 2P26A 3AFCA 3T3PB 3AL9A 4GZ8A 3OKYB 2UZYB 3AL8B 4UM9D 3ZDYB 2VDPB 2P28A 1SHYB 4WJKB
chains in the Genus database with same CATH topology
4Z7QB 4FWWA 1SSLA 2VDNB 2JWHA 2VDMB 3NVQA 2VDLB 1U8CB 3FCUB 2JWGA 3AL8A 3ZDXB 4WK0B 5E6RB 4O3TB 5E6UB 2VDOB 3NIDB 5HDBB 3NIFB 3OL2B 3ZE1B 3ZE2B 4UM9B 1YUKA 2VDKB 4O3UB 3T3MB 3ZDZB 3ZE0B 2VDQB 3NIGB 4UM8B 3VI3B 4Z7OB 3VI4B 4WK4B 3OL2A 4K3JB 5E6SB 1TYEB 1OLZA 2VC2B 4WK2B 2VDRB 3OKWA 4Z7NB 2P26A 3AFCA 3T3PB 3AL9A 4GZ8A 3OKYB 2UZYB 3AL8B 4UM9D 3ZDYB 2VDPB 2P28A 1SHYB 4WJKB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4Z7Q B;  4FWW A;  1SSL A;  2VDN B;  2VDM B;  3NVQ A;  2VDL B;  1U8C B;  3FCU B;  3AL8 A;  3ZDX B;  4WK0 B;  5E6R B;  4O3T B;  5E6U B;  2VDO B;  3NID B;  5HDB B;  3NIF B;  3OL2 B;  3ZE1 B;  3ZE2 B;  4UM9 B;  1YUK A;  2VDK B;  4O3U B;  3T3M B;  3ZDZ B;  3ZE0 B;  2VDQ B;  3NIG B;  4UM8 B;  3VI3 B;  4Z7O B;  3VI4 B;  4WK4 B;  3OL2 A;  4K3J B;  5E6S B;  1TYE B;  1OLZ A;  2VC2 B;  4WK2 B;  2VDR B;  3OKW A;  4Z7N B;  2P26 A;  3AFC A;  3T3P B;  3AL9 A;  4GZ8 A;  3OKY B;  2UZY B;  3AL8 B;  4UM9 D;  3ZDY B;  2VDP B;  2P28 A;  1SHY B;  4WJK B; 
#chains in the Genus database with same CATH topology
 4Z7Q B;  4FWW A;  1SSL A;  2VDN B;  2JWH A;  2VDM B;  3NVQ A;  2VDL B;  1U8C B;  3FCU B;  2JWG A;  3AL8 A;  3ZDX B;  4WK0 B;  5E6R B;  4O3T B;  5E6U B;  2VDO B;  3NID B;  5HDB B;  3NIF B;  3OL2 B;  3ZE1 B;  3ZE2 B;  4UM9 B;  1YUK A;  2VDK B;  4O3U B;  3T3M B;  3ZDZ B;  3ZE0 B;  2VDQ B;  3NIG B;  4UM8 B;  3VI3 B;  4Z7O B;  3VI4 B;  4WK4 B;  3OL2 A;  4K3J B;  5E6S B;  1TYE B;  1OLZ A;  2VC2 B;  4WK2 B;  2VDR B;  3OKW A;  4Z7N B;  2P26 A;  3AFC A;  3T3P B;  3AL9 A;  4GZ8 A;  3OKY B;  2UZY B;  3AL8 B;  4UM9 D;  3ZDY B;  2VDP B;  2P28 A;  1SHY B;  4WJK B; 
#chains in the Genus database with same CATH homology
 4Z7Q B;  4FWW A;  1SSL A;  2VDN B;  2JWH A;  2VDM B;  3NVQ A;  2VDL B;  1U8C B;  3FCU B;  2JWG A;  3AL8 A;  3ZDX B;  4WK0 B;  5E6R B;  4O3T B;  5E6U B;  2VDO B;  3NID B;  5HDB B;  3NIF B;  3OL2 B;  3ZE1 B;  3ZE2 B;  4UM9 B;  1YUK A;  2VDK B;  4O3U B;  3T3M B;  3ZDZ B;  3ZE0 B;  2VDQ B;  3NIG B;  4UM8 B;  3VI3 B;  4Z7O B;  3VI4 B;  4WK4 B;  3OL2 A;  4K3J B;  5E6S B;  1TYE B;  1OLZ A;  2VC2 B;  4WK2 B;  2VDR B;  3OKW A;  4Z7N B;  2P26 A;  3AFC A;  3T3P B;  3AL9 A;  4GZ8 A;  3OKY B;  2UZY B;  3AL8 B;  4UM9 D;  3ZDY B;  2VDP B;  2P28 A;  1SHY B;  4WJK B;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.