2JWGA

Structure of a glycosylphosphatidylinositol-anchored domain from a trypanosome variant surface glycoprotein
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
46
structure length
46
Chain Sequence
GKSPEAECNKITEEPKCSEEKICSWHKEVKAGEKNCQFNSTKASKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Membrane protein, immune system
source organism Trypanosoma
publication title Structure of a Glycosylphosphatidylinositol-anchored Domain from a Trypanosome Variant Surface Glycoprotein
pubmed doi rcsb
molecule keywords Variant surface glycoprotein ILTAT 1.24
total genus 7
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2007-10-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1680.30 Alpha Beta 2-Layer Sandwich ligand-binding face of the semaphorins, domain 2 ligand-binding face of the semaphorins, domain 2 2jwgA00
2JWGA
chains in the Genus database with same CATH superfamily
3OL2A 3VI4B 4UM9D 3OKWA 3ZE2B 4WK4B 2VDKB 3ZDZB 2P26A 2VDOB 3T3MB 3T3PB 3NIDB 3AL8B 2VDLB 4Z7QB 1OLZA 4UM9B 1YUKA 3AFCA 4FWWA 4K3JB 5E6SB 5HDBB 1SHYB 3AL8A 3ZDYB 4O3TB 4UM8B 5E6RB 2VDRB 3NIFB 3ZDXB 3VI3B 3ZE1B 1U8CB 5E6UB 3NVQA 3NIGB 4WK2B 4GZ8A 3AL9A 3OKYB 4O3UB 2VDMB 3ZE0B 2VDQB 4Z7NB 2UZYB 4WK0B 1TYEB 3OL2B 1SSLA 2VDNB 3FCUB 2P28A 4WJKB 4Z7OB 2JWGA 2VC2B 2VDPB 2JWHA
chains in the Genus database with same CATH topology
3OL2A 3VI4B 4UM9D 3OKWA 3ZE2B 4WK4B 2VDKB 3ZDZB 2P26A 2VDOB 3T3MB 3T3PB 3NIDB 3AL8B 2VDLB 4Z7QB 1OLZA 4UM9B 1YUKA 3AFCA 4FWWA 4K3JB 5E6SB 5HDBB 1SHYB 3AL8A 3ZDYB 4O3TB 4UM8B 5E6RB 2VDRB 3NIFB 3ZDXB 3VI3B 3ZE1B 1U8CB 5E6UB 3NVQA 3NIGB 4WK2B 4GZ8A 3AL9A 3OKYB 4O3UB 2VDMB 3ZE0B 2VDQB 4Z7NB 2UZYB 4WK0B 1TYEB 3OL2B 1SSLA 2VDNB 3FCUB 2P28A 4WJKB 4Z7OB 2JWGA 2VC2B 2VDPB 2JWHA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2JWG A; 
#chains in the Genus database with same CATH topology
 3OL2 A;  3VI4 B;  4UM9 D;  3OKW A;  3ZE2 B;  4WK4 B;  2VDK B;  3ZDZ B;  2P26 A;  2VDO B;  3T3M B;  3T3P B;  3NID B;  3AL8 B;  2VDL B;  4Z7Q B;  1OLZ A;  4UM9 B;  1YUK A;  3AFC A;  4FWW A;  4K3J B;  5E6S B;  5HDB B;  1SHY B;  3AL8 A;  3ZDY B;  4O3T B;  4UM8 B;  5E6R B;  2VDR B;  3NIF B;  3ZDX B;  3VI3 B;  3ZE1 B;  1U8C B;  5E6U B;  3NVQ A;  3NIG B;  4WK2 B;  4GZ8 A;  3AL9 A;  3OKY B;  4O3U B;  2VDM B;  3ZE0 B;  2VDQ B;  4Z7N B;  2UZY B;  4WK0 B;  1TYE B;  3OL2 B;  1SSL A;  2VDN B;  3FCU B;  2P28 A;  4WJK B;  4Z7O B;  2JWG A;  2VC2 B;  2VDP B;  2JWH A; 
#chains in the Genus database with same CATH homology
 3OL2 A;  3VI4 B;  4UM9 D;  3OKW A;  3ZE2 B;  4WK4 B;  2VDK B;  3ZDZ B;  2P26 A;  2VDO B;  3T3M B;  3T3P B;  3NID B;  3AL8 B;  2VDL B;  4Z7Q B;  1OLZ A;  4UM9 B;  1YUK A;  3AFC A;  4FWW A;  4K3J B;  5E6S B;  5HDB B;  1SHY B;  3AL8 A;  3ZDY B;  4O3T B;  4UM8 B;  5E6R B;  2VDR B;  3NIF B;  3ZDX B;  3VI3 B;  3ZE1 B;  1U8C B;  5E6U B;  3NVQ A;  3NIG B;  4WK2 B;  4GZ8 A;  3AL9 A;  3OKY B;  4O3U B;  2VDM B;  3ZE0 B;  2VDQ B;  4Z7N B;  2UZY B;  4WK0 B;  1TYE B;  3OL2 B;  1SSL A;  2VDN B;  3FCU B;  2P28 A;  4WJK B;  4Z7O B;  2JWG A;  2VC2 B;  2VDP B;  2JWH A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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