2JWHA

Structure of a glycosylphosphatidylinositol-anchored domain from a trypanosome variant surface glycoprotein
Total Genus 0
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
0
sequence length
48
structure length
48
Chain Sequence
GTKASKSGVPVTQTQTAGADTTAEKCKGKGEKDCKSPDCKWEGGTCKD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Membrane protein, immune system
source organism Trypanosoma brucei brucei
publication title Structure of a Glycosylphosphatidylinositol-anchored Domain from a Trypanosome Variant Surface Glycoprotein
pubmed doi rcsb
molecule keywords Variant surface glycoprotein ILTAT 1.24
structure length 48
sequence length 48
ec nomenclature
pdb deposition date 2007-10-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1680.40 Alpha Beta 2-Layer Sandwich ligand-binding face of the semaphorins, domain 2 ligand-binding face of the semaphorins, domain 2 2jwhA00
2JWHA
chains in the Genus database with same CATH superfamily
2P28A 1SSLA 2VDKB 2VDOB 3ZE1B 4WK0B 3FCUB 1TYEB 3AFCA 3VI4B 2VDQB 4UM9B 2JWHA 2JWGA 2VDPB 3ZDXB 3NIGB 3NIDB 2UZYB 4O3UB 1YUKA 2VC2B 4O3TB 3OL2A 3AL9A 4FWWA 2VDLB 3ZDYB 5E6SB 2VDRB 4WK4B 4WJKB 3OKWA 3ZE0B 3AL8A 1U8CB 3NIFB 5E6RB 1OLZA 3T3PB 3ZDZB 2P26A 4Z7OB 3OKYB 3NVQA 3OL2B 5E6UB 5HDBB 3T3MB 4Z7NB 3ZE2B 1SHYB 4UM9D 4GZ8A 4WK2B 4K3JB 4Z7QB 2VDNB 4UM8B 3AL8B 3VI3B 2VDMB
chains in the Genus database with same CATH topology
2P28A 1SSLA 2VDKB 2VDOB 3ZE1B 4WK0B 3FCUB 1TYEB 3AFCA 3VI4B 2VDQB 4UM9B 2JWHA 2JWGA 2VDPB 3ZDXB 3NIGB 3NIDB 2UZYB 4O3UB 1YUKA 2VC2B 4O3TB 3OL2A 3AL9A 4FWWA 2VDLB 3ZDYB 5E6SB 2VDRB 4WK4B 4WJKB 3OKWA 3ZE0B 3AL8A 1U8CB 3NIFB 5E6RB 1OLZA 3T3PB 3ZDZB 2P26A 4Z7OB 3OKYB 3NVQA 3OL2B 5E6UB 5HDBB 3T3MB 4Z7NB 3ZE2B 1SHYB 4UM9D 4GZ8A 4WK2B 4K3JB 4Z7QB 2VDNB 4UM8B 3AL8B 3VI3B 2VDMB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2JWH A; 
#chains in the Genus database with same CATH topology
 2P28 A;  1SSL A;  2VDK B;  2VDO B;  3ZE1 B;  4WK0 B;  3FCU B;  1TYE B;  3AFC A;  3VI4 B;  2VDQ B;  4UM9 B;  2JWH A;  2JWG A;  2VDP B;  3ZDX B;  3NIG B;  3NID B;  2UZY B;  4O3U B;  1YUK A;  2VC2 B;  4O3T B;  3OL2 A;  3AL9 A;  4FWW A;  2VDL B;  3ZDY B;  5E6S B;  2VDR B;  4WK4 B;  4WJK B;  3OKW A;  3ZE0 B;  3AL8 A;  1U8C B;  3NIF B;  5E6R B;  1OLZ A;  3T3P B;  3ZDZ B;  2P26 A;  4Z7O B;  3OKY B;  3NVQ A;  3OL2 B;  5E6U B;  5HDB B;  3T3M B;  4Z7N B;  3ZE2 B;  1SHY B;  4UM9 D;  4GZ8 A;  4WK2 B;  4K3J B;  4Z7Q B;  2VDN B;  4UM8 B;  3AL8 B;  3VI3 B;  2VDM B; 
#chains in the Genus database with same CATH homology
 2P28 A;  1SSL A;  2VDK B;  2VDO B;  3ZE1 B;  4WK0 B;  3FCU B;  1TYE B;  3AFC A;  3VI4 B;  2VDQ B;  4UM9 B;  2JWH A;  2JWG A;  2VDP B;  3ZDX B;  3NIG B;  3NID B;  2UZY B;  4O3U B;  1YUK A;  2VC2 B;  4O3T B;  3OL2 A;  3AL9 A;  4FWW A;  2VDL B;  3ZDY B;  5E6S B;  2VDR B;  4WK4 B;  4WJK B;  3OKW A;  3ZE0 B;  3AL8 A;  1U8C B;  3NIF B;  5E6R B;  1OLZ A;  3T3P B;  3ZDZ B;  2P26 A;  4Z7O B;  3OKY B;  3NVQ A;  3OL2 B;  5E6U B;  5HDB B;  3T3M B;  4Z7N B;  3ZE2 B;  1SHY B;  4UM9 D;  4GZ8 A;  4WK2 B;  4K3J B;  4Z7Q B;  2VDN B;  4UM8 B;  3AL8 B;  3VI3 B;  2VDM B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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