3AX2 | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	70
structure length	70
Chain Sequence	GSDLKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein/transport protein
source organism	Rattus norvegicus
publication title	Crystallographic snapshots of tom20-mitochondrial presequence interactions with disulfide-stabilized peptides. pubmed doi rcsb
molecule keywords	Mitochondrial import receptor subunit TOM20 homolog
total genus	28
structure length	70
sequence length	70
chains with identical sequence	C, E, G
ec nomenclature
pdb deposition date	2011-03-28

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.960.10	Mainly Alpha	Up-down Bundle	Mitochondrial Import Receptor Subunit Tom20; Chain A	Mitochondrial outer membrane translocase complex, subunit Tom20 domain	3ax2A00

3AWRA 3AX5A 3AX3A 3AX2A 2V1TA 1OM2A 2V1SA
chains in the Genus database with same CATH superfamily

4NLOA 3CDUA 3N6NA 2F8EX 5F8JA 1TP7A 4IKAA 2E9ZA 4NLTA 5F8HA 1XR7A 2ILZA 2IM1A 3OL8A 2IJFA 4K4VA 3N6MA 4ZPBA 2D7SA 4ZPCA 4ZPAA 4LQ3A 5JXSA 4WZQA 3NKYA 4NLYA 1RA7A 4ZP8A 1RAJA 4NYZA 3SFGA 4NLXA 2EC0A 2V1SA 4Y2CA 2ILYA 3BSOA 4IQXA 4NLVA 4K50A 1KHVA 3KNAA 2XZ2A 2CKWA 3OLAA 3QIDA 5F8IA 4NLQA 3N6LA 3OL9A 3KMSA 1SH0A 3H5YA 4ZP6A 3KMQA 3DDKA 3NAIA 2XTDA 4ZP7A 2B43A 1SH2A 1U09A 4K4YA 2V1TA 3KLVA 1XR6A 4Y2AA 2IM2A 1KHWA 4NLSA 5F8LA 3NMAA 2E9TA 1SH3A 4NRTA 2UUTA 1WNEA 4R0EA 4X2BA 3AX5A 4Y34A 3OL7A 4O4RA 4WZMA 2IM0A 5F8GA 4Y3CA 3OLBA 3SFUA 4WYLA 4K4ZA 3H5XA 4K4WA 4QPXA 1UUJA 5F8MA 4WFZA 3AWRA 4LQ9A 3KOAA 4K4TA 3OL6A 3AX2A 1XR5A 4ZPDA 4K4XA 3UPFA 3CDWA 4NLWA 3AX3A 3NL0A 2XTCA 4NZ0A 3UR0A 3BSNA 2IM3A 3NAHA 4NLRA 4K4SA 2UUWA 1RA6A 4WYWA 3UQSA 2E9RX 4ZP9A 4NLPA 2WK4A 4WFYA 4K4UA 4NRUA 2XTEA 4NLUA 4WFXA 1OM2A 1RDRA 2D68A 5F8NA 1TQLA
chains in the Genus database with same CATH topology

3AWRA 3AX5A 3AX3A 3AX2A 2V1TA 1OM2A 2V1SA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3AWR A;  3AX5 A;  3AX3 A;  3AX2 A;  2V1T A;  1OM2 A;  2V1S A; 
#chains in the Genus database with same CATH topology
 4NLO A;  3CDU A;  3N6N A;  2F8E X;  5F8J A;  1TP7 A;  4IKA A;  2E9Z A;  4NLT A;  5F8H A;  1XR7 A;  2ILZ A;  2IM1 A;  3OL8 A;  2IJF A;  4K4V A;  3N6M A;  4ZPB A;  2D7S A;  4ZPC A;  4ZPA A;  4LQ3 A;  5JXS A;  4WZQ A;  3NKY A;  4NLY A;  1RA7 A;  4ZP8 A;  1RAJ A;  4NYZ A;  3SFG A;  4NLX A;  2EC0 A;  2V1S A;  4Y2C A;  2ILY A;  3BSO A;  4IQX A;  4NLV A;  4K50 A;  1KHV A;  3KNA A;  2XZ2 A;  2CKW A;  3OLA A;  3QID A;  5F8I A;  4NLQ A;  3N6L A;  3OL9 A;  3KMS A;  1SH0 A;  3H5Y A;  4ZP6 A;  3KMQ A;  3DDK A;  3NAI A;  2XTD A;  4ZP7 A;  2B43 A;  1SH2 A;  1U09 A;  4K4Y A;  2V1T A;  3KLV A;  1XR6 A;  4Y2A A;  2IM2 A;  1KHW A;  4NLS A;  5F8L A;  3NMA A;  2E9T A;  1SH3 A;  4NRT A;  2UUT A;  1WNE A;  4R0E A;  4X2B A;  3AX5 A;  4Y34 A;  3OL7 A;  4O4R A;  4WZM A;  2IM0 A;  5F8G A;  4Y3C A;  3OLB A;  3SFU A;  4WYL A;  4K4Z A;  3H5X A;  4K4W A;  4QPX A;  1UUJ A;  5F8M A;  4WFZ A;  3AWR A;  4LQ9 A;  3KOA A;  4K4T A;  3OL6 A;  3AX2 A;  1XR5 A;  4ZPD A;  4K4X A;  3UPF A;  3CDW A;  4NLW A;  3AX3 A;  3NL0 A;  2XTC A;  4NZ0 A;  3UR0 A;  3BSN A;  2IM3 A;  3NAH A;  4NLR A;  4K4S A;  2UUW A;  1RA6 A;  4WYW A;  3UQS A;  2E9R X;  4ZP9 A;  4NLP A;  2WK4 A;  4WFY A;  4K4U A;  4NRU A;  2XTE A;  4NLU A;  4WFX A;  1OM2 A;  1RDR A;  2D68 A;  5F8N A;  1TQL A; 
#chains in the Genus database with same CATH homology
 3AWR A;  3AX5 A;  3AX3 A;  3AX2 A;  2V1T A;  1OM2 A;  2V1S A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3AX2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN