The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
271
|
sequence length |
871
|
structure length |
838
|
Chain Sequence |
MTWPVKDFNYSDPVNDNDILYLRIPQNKLITTPVKAFMITQNIWVIPERFSSDTNPSLSKPPRPTSKYQSYYDPSYLSTDEQKDTFLKGIIKLFKRINERDIGKKLINYLVVGSPFMGDSSTPEDTFDFTRHTTNIAVEKFENGSWKVTNIITPSVLIFGPLPNILDYTASLTLQGQQSNPSFEGFGTLSILKVAPEFLLTFSDVTSNQSSAVLGKSIFCMDPVIALMHQLTYSLHQLYGINIPSDKRIRPQVSEGFFSQDGPNVQFEELYTFGGLDVEIIPQIERSQLREKALGHYKDIAKRLNNINKTIPSSWISNIDKYKKIFSEKYNFDKDNTGNFVVNIDKFNSLYSDLTNVMSEVVYSSQYNVKNRTHYFSRHYLPVFANILDDNIYTIRDGFNLTNKGFNIENSGQNIERNPALQKLSSESVVDLFTKVCVDKSLQCIKVKNNRLPYVADKDSISQEIFENKIITDETNVVPINPEIVDPLLPNVNMEPLNLPGEEIVFYDDITKYVDYLNSYYYLESQKLSNNVENITLTTSVEEALGYSNKIYTFLPSLAEKVNKGVQAGLFLNWANEVVEDFTTNIMKKDTLDKISDVSVIIPYIGPALNIGNSALRGNFNQAFATAGVAFLLEGFPEFTIPALGVFTFYSSIQEREKIIKTIENCLEQRVKRWKDSYQWMVSNWLSRITTQFNHINYQMYDSLSYQADAIKAKIDLEYKKYSGSDKENIKSQVENLKNSLDVKISEAMNNINKFIRECSVTYLFKNMLPKVIDELNKFDLRTKTELINLIDSHNIILVGEVDRLKAKVNESFENTMPFNIFSYTNNSLLKDIINEYF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural analysis of Clostridium botulinum neurotoxin type D as a platform for the development of targeted secretion inhibitors.
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Clostridium botulinum
|
| molecule keywords |
Botulinum neurotoxin type D,Botulinum neurotoxin type D
|
| total genus |
271
|
| structure length |
838
|
| sequence length |
871
|
| ec nomenclature |
ec
3.4.24.69: Bontoxilysin. |
| pdb deposition date | 2015-05-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01742 | Peptidase_M27 | Clostridial neurotoxin zinc protease |
| A | PF07952 | Toxin_trans | Clostridium neurotoxin, Translocation domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Clostridium botulinum neurotoxin B, "coiled-coil" domain | Clostridium botulinum neurotoxin b, "coiled-coil" domain | ||
| Alpha Beta | Alpha-Beta Complex | Zincin-like | Metalloproteases ("zincins"), catalytic domain like |
#chains in the Genus database with same CATH superfamily 1T3A A; 2A8A A; 3NF3 A; 4EJ5 A; 3ZUR A; 1S0E A; 3QIY A; 3DS9 A; 3K3Q B; 1S0B A; 1EPW A; 1Z7H A; 3QIX A; 2ISE A; 3C89 A; 3C8B A; 1ZL6 A; 2ISG A; 2NP0 A; 2NZ9 A; 3BON A; 1ZL5 A; 3QW6 A; 2FPQ A; 3QJ0 A; 1S0F A; 4ELC A; 1F82 A; 4KUF A; 2ILP A; 3ZUS A; 3DEB A; 3D3X A; 2IMC A; 3QIZ A; 1ZKW A; 3QW8 A; 3DSE A; 1E1H A; 3VUO A; 5BQN A; 4J1L A; 4KS6 A; 3BTA A; 1YVG A; 3C88 A; 3V0A A; 4ZJX A; 3BOO A; 4KTX A; 4EL4 A; 2G7P A; 2G7K A; 3BWI A; 2IMB A; 1S0C A; 1G9B A; 3V0A B; 4HEV A; 3V0B A; 1I1E A; 5BQM A; 4ZKT B; 2QN0 A; 3C8A A; 2XHL A; 3V0B B; 5BQM B; 3ZUQ A; 3QW7 A; 3FFZ A; 3FIE A; 2A97 A; 1S0D A; 2XHL B; 3QW5 A; 2ISH A; 1ZN3 A; 1G9D A; 2NYY A; 3DDB A; 3DDA A; 1T3C A; 3FII A; 2G7N A; 1XTF A; 1F31 A; 1G9C A; 2W2D A; 1G9A A; 2IMA A; 2G7Q A; 1S0G A; 3BOK A; 1ZB7 A; 1XTG A; 2ETF A; 1ZKX A; 2W2D B; #chains in the Genus database with same CATH topology 1T3A A; 4QHF A; 2A8A A; 3NF3 A; 4EJ5 A; 3ZUR A; 1S0E A; 3QIY A; 3DS9 A; 3K3Q B; 1S0B A; 1EPW A; 1Z7H A; 3QIX A; 3CQB A; 2ISE A; 3C89 A; 3C8B A; 1ZL6 A; 2ISG A; 2NP0 A; 2NZ9 A; 3BON A; 1ZL5 A; 3QW6 A; 2FPQ A; 3QJ0 A; 1S0F A; 4ELC A; 1F82 A; 4KUF A; 2ILP A; 3ZUS A; 3DEB A; 3D3X A; 2IMC A; 3QIZ A; 4IL3 A; 1ZKW A; 3QW8 A; 3DSE A; 1E1H A; 3VUO A; 5BQN A; 4J1L A; 4KS6 A; 3BTA A; 1YVG A; 3C88 A; 3V0A A; 4ZJX A; 3BOO A; 4JIU A; 4KTX A; 4EL4 A; 2G7P A; 2G7K A; 3BWI A; 2IMB A; 1S0C A; 1G9B A; 3E11 A; 3V0A B; 4HEV A; 3V0B A; 4AW6 A; 1I1E A; 5BQM A; 2YPT A; 4ZKT B; 2QN0 A; 3C8A A; 2XHL A; 3V0B B; 5BQM B; 3ZUQ A; 3QW7 A; 3FFZ A; 3FIE A; 2A97 A; 1S0D A; 2XHL B; 3QW5 A; 2ISH A; 1ZN3 A; 1G9D A; 2NYY A; 3DDB A; 3DDA A; 1T3C A; 3FII A; 2G7N A; 1XTF A; 1F31 A; 1G9C A; 2W2D A; 1G9A A; 2IMA A; 2G7Q A; 1S0G A; 4JIX A; 3BOK A; 1ZB7 A; 1XTG A; 2ETF A; 1ZKX A; 2W2D B; 2EJQ A; #chains in the Genus database with same CATH homology 1T3A A; 2A8A A; 3NF3 A; 4EJ5 A; 3ZUR A; 1S0E A; 3QIY A; 3DS9 A; 3K3Q B; 1S0B A; 1EPW A; 1Z7H A; 3QIX A; 2ISE A; 3C89 A; 3C8B A; 1ZL6 A; 2ISG A; 2NP0 A; 2NZ9 A; 3BON A; 1ZL5 A; 3QW6 A; 2FPQ A; 3QJ0 A; 1S0F A; 4ELC A; 1F82 A; 4KUF A; 2ILP A; 3ZUS A; 3DEB A; 3D3X A; 2IMC A; 3QIZ A; 1ZKW A; 3QW8 A; 3DSE A; 1E1H A; 3VUO A; 5BQN A; 4J1L A; 4KS6 A; 3BTA A; 1YVG A; 3C88 A; 3V0A A; 4ZJX A; 3BOO A; 4KTX A; 4EL4 A; 2G7P A; 2G7K A; 3BWI A; 2IMB A; 1S0C A; 1G9B A; 3V0A B; 4HEV A; 3V0B A; 1I1E A; 5BQM A; 4ZKT B; 2QN0 A; 3C8A A; 2XHL A; 3V0B B; 5BQM B; 3ZUQ A; 3QW7 A; 3FFZ A; 3FIE A; 2A97 A; 1S0D A; 2XHL B; 3QW5 A; 2ISH A; 1ZN3 A; 1G9D A; 2NYY A; 3DDB A; 3DDA A; 1T3C A; 3FII A; 2G7N A; 1XTF A; 1F31 A; 1G9C A; 2W2D A; 1G9A A; 2IMA A; 2G7Q A; 1S0G A; 3BOK A; 1ZB7 A; 1XTG A; 2ETF A; 1ZKX A; 2W2D B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
