1AXJA

Fmn-binding protein from desulfovibrio vulgaris (miyazaki f), nmr, 20 structures
Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
122
structure length
122
Chain Sequence
MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV2 (39-42)S7 (109-120)3H1 (33-35)S2 (27-32)S5 (63-70)AH3 (95-103)S3 (37-38)S4 (43-48)AH2 (52-60)TIV3 (48-51)TI1 (70-73)TVIII1 (75-78)S6 (81-92)TIV5 (104-107)S1 (15-20)AH1 (4-11)TIV1 (22-25)Updating...
connected with : NaN
molecule tags Binding protein
source organism Desulfovibrio vulgaris str. 'miyazaki f'
publication title Pathway of chymotrypsin evolution suggested by the structure of the FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
pubmed doi rcsb
molecule keywords FMN-BINDING PROTEIN
total genus 32
structure length 122
sequence length 122
ec nomenclature
pdb deposition date 1997-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1axjA00
3A6QA 3R5ZA 5BNCA 1FLMA 2HQ9A 3ZOCA 4QVBA 3AMFA 4L82A 3IN6A 5CHEC 2QCKA 4Y9IA 3R5PA 2HQ7A 3B5MA 4HMXA 2ECRA 5CHOA 1I0SA 3HY8A 1W9AA 1G79A 1USFA 3A6RA 1XXOA 3DMBA 1G77A 2HHZA 3U35A 3HMZA 4HMTA 1DNLA 3FGEA 3F7EA 3CP3A 1I0RA 3K87A 2NR4A 1YLNA 1NRGA 4XJ2A 2VPAA 1W3PA 2Q9KA 2ASFA 2GJGA 4HMSA 1VL7A 3AWHA 3SWJA 1W3OA 2R6VA 1EJEA 1RFEA 3ZOHA 2D38A 4R82A 4YBNA 2E83A 3GASA 3E4VA 3NFWA 3K88A 3PFTA 3VY5A 2I51A 2ARZA 5ESCA 2AQ6A 2I02A 3K86A 3BNKA 3R5YA 3VY2A 3KYGA 4HMUA 2FG9A 2IG6A 2D37A 2X1JA 3H96A 3TGVA 1USCA 3BPKA 2D5MA 1WV4A 4HX6A 3ZOGA 1W3RA 3DB0A 4N7RC 1G76A 2OU5A 1WGBA 3KYFA 2A2JA 4HMWA 1RZ0A 2FHQA 3BA3A 1T9MA 1WLKA 2HTIA 3U5WA 1Y30A 1G78A 3ZOFA 3EC6A 3R5WA 3ZODA 1TY9A 4Z85A 4F07A 2HTDA 2RE7A 4YWNA 2X1KA 1RZ1A 2ED4A 5JABA 3VYAA 1YOAA 3R5LA 3U34A 3RH7A 1XHNA 3A20A 4HMVA 2ECUA 1W3QA 2IMLA 3U0IA 2IABA 4IRAA 3DNHA 2RDEA 2PTFA 2R0XA 3FKHA 3ZOEA 1AXJA 2QEAA 1WLIA 3CB0A 2FURA 4ZKYA 1JNWA 4XHYA 1CI0A 3R5RA 2D36A 2OL5A
chains in the Genus database with same CATH superfamily
3A6QA 3R5ZA 5BNCA 1FLMA 4HKHA 2HQ9A 2GUJA 3ZOCA 4QVBA 2L1TA 3AMFA 4L82A 3IN6A 5CHEC 2QCKA 4Y9IA 3R5PA 2HQ7A 3B5MA 4HMXA 2ECRA 5CHOA 1I0SA 3HY8A 1W9AA 1G79A 1USFA 3A6RA 1XXOA 3DMBA 1G77A 2HHZA 3U35A 3HMZA 4HMTA 1DNLA 3FGEA 3F7EA 3CP3A 1I0RA 3K87A 2NR4A 1YLNA 1NRGA 4XJ2A 2VPAA 1W3PA 2Q9KA 2ASFA 2K4QA 2GJGA 4HMSA 1VL7A 3AWHA 3SWJA 1W3OA 2R6VA 1EJEA 1RFEA 3ZOHA 1Y12A 2D38A 4R82A 4YBNA 4TV4A 2E83A 3GASA 3E4VA 3NFWA 3K88A 3PFTA 3VY5A 2P5ZX 2I51A 2ARZA 5ESCA 2AQ6A 2I02A 3K86A 3BNKA 4UHVA 3R5YA 3VY2A 3KYGA 4HMUA 3V4HA 2FG9A 2IG6A 2D37A 2X1JA 3H96A 3TGVA 1USCA 3BPKA 2D5MA 1WV4A 4HX6A 3ZOGA 1W3RA 3DB0A 4N7RC 1G76A 2OU5A 1WGBA 3KYFA 2A2JA 4HMWA 1RZ0A 2FHQA 3BA3A 1T9MA 4W64A 1WLKA 2HTIA 3U5WA 1Y30A 1G78A 3ZOFA 3EC6A 3EAAA 3R5WA 3ZODA 1TY9A 4Z85A 4F07A 2HTDA 2RE7A 4YWNA 2X1KA 1RZ1A 2ED4A 5JABA 3VYAA 1YOAA 3R5LA 3U34A 3RH7A 1XHNA 3A20A 4HMVA 2ECUA 1W3QA 2IMLA 3U0IA 2IABA 4IRAA 3DNHA 2RDEA 2R0XA 2PTFA 3FKHA 4MTKA 3ZOEA 2QEAA 1AXJA 1WLIA 3CB0A 2FURA 4ZKYA 1JNWA 4XHYA 1CI0A 3R5RA 2D36A 2OL5A 3HE1A
chains in the Genus database with same CATH topology
3A6QA 3R5ZA 5BNCA 1FLMA 2HQ9A 3ZOCA 4QVBA 3AMFA 4L82A 3IN6A 5CHEC 2QCKA 4Y9IA 3R5PA 2HQ7A 3B5MA 4HMXA 2ECRA 5CHOA 1I0SA 3HY8A 1W9AA 1G79A 1USFA 3A6RA 1XXOA 3DMBA 1G77A 2HHZA 3U35A 3HMZA 4HMTA 1DNLA 3FGEA 3F7EA 3CP3A 1I0RA 3K87A 2NR4A 1YLNA 1NRGA 4XJ2A 2VPAA 1W3PA 2Q9KA 2ASFA 2GJGA 4HMSA 1VL7A 3AWHA 3SWJA 1W3OA 2R6VA 1EJEA 1RFEA 3ZOHA 2D38A 4R82A 4YBNA 2E83A 3GASA 3E4VA 3NFWA 3K88A 3PFTA 3VY5A 2I51A 2ARZA 5ESCA 2AQ6A 2I02A 3K86A 3BNKA 3R5YA 3VY2A 3KYGA 4HMUA 2FG9A 2IG6A 2D37A 2X1JA 3H96A 3TGVA 1USCA 3BPKA 2D5MA 1WV4A 4HX6A 3ZOGA 1W3RA 3DB0A 4N7RC 1G76A 2OU5A 1WGBA 3KYFA 2A2JA 4HMWA 1RZ0A 2FHQA 3BA3A 1T9MA 1WLKA 2HTIA 3U5WA 1Y30A 1G78A 3ZOFA 3EC6A 3R5WA 3ZODA 1TY9A 4Z85A 4F07A 2HTDA 2RE7A 4YWNA 2X1KA 1RZ1A 2ED4A 5JABA 3VYAA 1YOAA 3R5LA 3U34A 3RH7A 1XHNA 3A20A 4HMVA 2ECUA 1W3QA 2IMLA 3U0IA 2IABA 4IRAA 3DNHA 2RDEA 2PTFA 2R0XA 3FKHA 3ZOEA 1AXJA 2QEAA 1WLIA 3CB0A 2FURA 4ZKYA 1JNWA 4XHYA 1CI0A 3R5RA 2D36A 2OL5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A6Q A;  3R5Z A;  5BNC A;  1FLM A;  2HQ9 A;  3ZOC A;  4QVB A;  3AMF A;  4L82 A;  3IN6 A;  5CHE C;  2QCK A;  4Y9I A;  3R5P A;  2HQ7 A;  3B5M A;  4HMX A;  2ECR A;  5CHO A;  1I0S A;  3HY8 A;  1W9A A;  1G79 A;  1USF A;  3A6R A;  1XXO A;  3DMB A;  1G77 A;  2HHZ A;  3U35 A;  3HMZ A;  4HMT A;  1DNL A;  3FGE A;  3F7E A;  3CP3 A;  1I0R A;  3K87 A;  2NR4 A;  1YLN A;  1NRG A;  4XJ2 A;  2VPA A;  1W3P A;  2Q9K A;  2ASF A;  2GJG A;  4HMS A;  1VL7 A;  3AWH A;  3SWJ A;  1W3O A;  2R6V A;  1EJE A;  1RFE A;  3ZOH A;  2D38 A;  4R82 A;  4YBN A;  2E83 A;  3GAS A;  3E4V A;  3NFW A;  3K88 A;  3PFT A;  3VY5 A;  2I51 A;  2ARZ A;  5ESC A;  2AQ6 A;  2I02 A;  3K86 A;  3BNK A;  3R5Y A;  3VY2 A;  3KYG A;  4HMU A;  2FG9 A;  2IG6 A;  2D37 A;  2X1J A;  3H96 A;  3TGV A;  1USC A;  3BPK A;  2D5M A;  1WV4 A;  4HX6 A;  3ZOG A;  1W3R A;  3DB0 A;  4N7R C;  1G76 A;  2OU5 A;  1WGB A;  3KYF A;  2A2J A;  4HMW A;  1RZ0 A;  2FHQ A;  3BA3 A;  1T9M A;  1WLK A;  2HTI A;  3U5W A;  1Y30 A;  1G78 A;  3ZOF A;  3EC6 A;  3R5W A;  3ZOD A;  1TY9 A;  4Z85 A;  4F07 A;  2HTD A;  2RE7 A;  4YWN A;  2X1K A;  1RZ1 A;  2ED4 A;  5JAB A;  3VYA A;  1YOA A;  3R5L A;  3U34 A;  3RH7 A;  1XHN A;  3A20 A;  4HMV A;  2ECU A;  1W3Q A;  2IML A;  3U0I A;  2IAB A;  4IRA A;  3DNH A;  2RDE A;  2PTF A;  2R0X A;  3FKH A;  3ZOE A;  1AXJ A;  2QEA A;  1WLI A;  3CB0 A;  2FUR A;  4ZKY A;  1JNW A;  4XHY A;  1CI0 A;  3R5R A;  2D36 A;  2OL5 A; 
#chains in the Genus database with same CATH topology
 3A6Q A;  3R5Z A;  5BNC A;  1FLM A;  4HKH A;  2HQ9 A;  2GUJ A;  3ZOC A;  4QVB A;  2L1T A;  3AMF A;  4L82 A;  3IN6 A;  5CHE C;  2QCK A;  4Y9I A;  3R5P A;  2HQ7 A;  3B5M A;  4HMX A;  2ECR A;  5CHO A;  1I0S A;  3HY8 A;  1W9A A;  1G79 A;  1USF A;  3A6R A;  1XXO A;  3DMB A;  1G77 A;  2HHZ A;  3U35 A;  3HMZ A;  4HMT A;  1DNL A;  3FGE A;  3F7E A;  3CP3 A;  1I0R A;  3K87 A;  2NR4 A;  1YLN A;  1NRG A;  4XJ2 A;  2VPA A;  1W3P A;  2Q9K A;  2ASF A;  2K4Q A;  2GJG A;  4HMS A;  1VL7 A;  3AWH A;  3SWJ A;  1W3O A;  2R6V A;  1EJE A;  1RFE A;  3ZOH A;  1Y12 A;  2D38 A;  4R82 A;  4YBN A;  4TV4 A;  2E83 A;  3GAS A;  3E4V A;  3NFW A;  3K88 A;  3PFT A;  3VY5 A;  2P5Z X;  2I51 A;  2ARZ A;  5ESC A;  2AQ6 A;  2I02 A;  3K86 A;  3BNK A;  4UHV A;  3R5Y A;  3VY2 A;  3KYG A;  4HMU A;  3V4H A;  2FG9 A;  2IG6 A;  2D37 A;  2X1J A;  3H96 A;  3TGV A;  1USC A;  3BPK A;  2D5M A;  1WV4 A;  4HX6 A;  3ZOG A;  1W3R A;  3DB0 A;  4N7R C;  1G76 A;  2OU5 A;  1WGB A;  3KYF A;  2A2J A;  4HMW A;  1RZ0 A;  2FHQ A;  3BA3 A;  1T9M A;  4W64 A;  1WLK A;  2HTI A;  3U5W A;  1Y30 A;  1G78 A;  3ZOF A;  3EC6 A;  3EAA A;  3R5W A;  3ZOD A;  1TY9 A;  4Z85 A;  4F07 A;  2HTD A;  2RE7 A;  4YWN A;  2X1K A;  1RZ1 A;  2ED4 A;  5JAB A;  3VYA A;  1YOA A;  3R5L A;  3U34 A;  3RH7 A;  1XHN A;  3A20 A;  4HMV A;  2ECU A;  1W3Q A;  2IML A;  3U0I A;  2IAB A;  4IRA A;  3DNH A;  2RDE A;  2R0X A;  2PTF A;  3FKH A;  4MTK A;  3ZOE A;  2QEA A;  1AXJ A;  1WLI A;  3CB0 A;  2FUR A;  4ZKY A;  1JNW A;  4XHY A;  1CI0 A;  3R5R A;  2D36 A;  2OL5 A;  3HE1 A; 
#chains in the Genus database with same CATH homology
 3A6Q A;  3R5Z A;  5BNC A;  1FLM A;  2HQ9 A;  3ZOC A;  4QVB A;  3AMF A;  4L82 A;  3IN6 A;  5CHE C;  2QCK A;  4Y9I A;  3R5P A;  2HQ7 A;  3B5M A;  4HMX A;  2ECR A;  5CHO A;  1I0S A;  3HY8 A;  1W9A A;  1G79 A;  1USF A;  3A6R A;  1XXO A;  3DMB A;  1G77 A;  2HHZ A;  3U35 A;  3HMZ A;  4HMT A;  1DNL A;  3FGE A;  3F7E A;  3CP3 A;  1I0R A;  3K87 A;  2NR4 A;  1YLN A;  1NRG A;  4XJ2 A;  2VPA A;  1W3P A;  2Q9K A;  2ASF A;  2GJG A;  4HMS A;  1VL7 A;  3AWH A;  3SWJ A;  1W3O A;  2R6V A;  1EJE A;  1RFE A;  3ZOH A;  2D38 A;  4R82 A;  4YBN A;  2E83 A;  3GAS A;  3E4V A;  3NFW A;  3K88 A;  3PFT A;  3VY5 A;  2I51 A;  2ARZ A;  5ESC A;  2AQ6 A;  2I02 A;  3K86 A;  3BNK A;  3R5Y A;  3VY2 A;  3KYG A;  4HMU A;  2FG9 A;  2IG6 A;  2D37 A;  2X1J A;  3H96 A;  3TGV A;  1USC A;  3BPK A;  2D5M A;  1WV4 A;  4HX6 A;  3ZOG A;  1W3R A;  3DB0 A;  4N7R C;  1G76 A;  2OU5 A;  1WGB A;  3KYF A;  2A2J A;  4HMW A;  1RZ0 A;  2FHQ A;  3BA3 A;  1T9M A;  1WLK A;  2HTI A;  3U5W A;  1Y30 A;  1G78 A;  3ZOF A;  3EC6 A;  3R5W A;  3ZOD A;  1TY9 A;  4Z85 A;  4F07 A;  2HTD A;  2RE7 A;  4YWN A;  2X1K A;  1RZ1 A;  2ED4 A;  5JAB A;  3VYA A;  1YOA A;  3R5L A;  3U34 A;  3RH7 A;  1XHN A;  3A20 A;  4HMV A;  2ECU A;  1W3Q A;  2IML A;  3U0I A;  2IAB A;  4IRA A;  3DNH A;  2RDE A;  2PTF A;  2R0X A;  3FKH A;  3ZOE A;  1AXJ A;  2QEA A;  1WLI A;  3CB0 A;  2FUR A;  4ZKY A;  1JNW A;  4XHY A;  1CI0 A;  3R5R A;  2D36 A;  2OL5 A; 
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