1AXJ | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	122
structure length	122
Chain Sequence	MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 122 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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122 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Binding protein
source organism	Desulfovibrio vulgaris str. 'miyazaki f'
publication title	Pathway of chymotrypsin evolution suggested by the structure of the FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F) pubmed doi rcsb
molecule keywords	FMN-BINDING PROTEIN
total genus	32
structure length	122
sequence length	122
ec nomenclature
pdb deposition date	1997-10-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01243	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	1axjA00

1WGBA 2R6VA 1G78A 3A6QA 3ZOFA 3R5RA 3R5PA 3VY5A 4L82A 3VY2A 3ZOCA 5JABA 2A2JA 2Q9KA 1NRGA 1CI0A 3BPKA 4F07A 3GASA 2OU5A 3AWHA 3E4VA 4YWNA 4HMWA 3H96A 3SWJA 1WV4A 2ECUA 3ZOGA 4ZKYA 3K87A 4YBNA 3U5WA 1USCA 4HMSA 1G77A 1T9MA 3A20A 1JNWA 3AMFA 2ED4A 2HQ7A 2IABA 4HMUA 3R5YA 5CHOA 1YOAA 1YLNA 1W3PA 3EC6A 2HTDA 1I0SA 4XHYA 4N7RC 3IN6A 3BNKA 3U34A 3CB0A 5CHEC 1W3OA 2IMLA 3DNHA 3KYFA 1EJEA 5BNCA 3HY8A 3FKHA 4HX6A 1W3RA 3BA3A 1FLMA 1RZ0A 1XXOA 3U0IA 1WLKA 2FHQA 2D38A 3K88A 3R5LA 2IG6A 2D5MA 2E83A 2RE7A 2RDEA 2R0XA 3KYGA 3B5MA 1G79A 3PFTA 1W9AA 4HMTA 3U35A 1RZ1A 3A6RA 3FGEA 1VL7A 3HMZA 1XHNA 3K86A 5ESCA 3F7EA 3NFWA 2VPAA 1AXJA 3VYAA 2FG9A 2AQ6A 1WLIA 3ZODA 2HQ9A 3R5ZA 2ARZA 4HMVA 4IRAA 2I51A 3DB0A 4Y9IA 4R82A 3R5WA 1G76A 2X1JA 3RH7A 3TGVA 2ASFA 1TY9A 4HMXA 2ECRA 3ZOEA 1RFEA 2QEAA 3ZOHA 2X1KA 2GJGA 1W3QA 1Y30A 2D37A 2NR4A 4XJ2A 1USFA 2HTIA 2FURA 1DNLA 4Z85A 2HHZA 2D36A 4QVBA 3DMBA 1I0RA 3CP3A 2PTFA 2QCKA 2I02A 2OL5A
chains in the Genus database with same CATH superfamily

1WGBA 2R6VA 1G78A 3A6QA 3ZOFA 3R5RA 3R5PA 3VY5A 4L82A 3VY2A 2K4QA 3ZOCA 3HE1A 5JABA 2A2JA 2Q9KA 1NRGA 1CI0A 3BPKA 4F07A 3GASA 2OU5A 3AWHA 3E4VA 4YWNA 4HMWA 3H96A 3SWJA 1WV4A 2ECUA 3ZOGA 4ZKYA 3K87A 4YBNA 3U5WA 1USCA 4HMSA 1G77A 1T9MA 3A20A 1JNWA 3AMFA 4UHVA 2ED4A 2HQ7A 2IABA 4HMUA 3R5YA 5CHOA 1YOAA 1YLNA 1W3PA 3EC6A 2HTDA 1I0SA 4XHYA 4N7RC 3IN6A 3BNKA 3U34A 3CB0A 5CHEC 1W3OA 2IMLA 3DNHA 3KYFA 1EJEA 5BNCA 3HY8A 3FKHA 4HX6A 1W3RA 3BA3A 1FLMA 3V4HA 4HKHA 1RZ0A 1XXOA 3U0IA 1WLKA 2FHQA 2D38A 3K88A 3R5LA 2IG6A 2D5MA 2E83A 2RE7A 2RDEA 2R0XA 3KYGA 3B5MA 1G79A 3PFTA 1W9AA 4HMTA 3U35A 1RZ1A 3A6RA 3FGEA 1VL7A 3HMZA 1XHNA 2L1TA 3K86A 5ESCA 3F7EA 3NFWA 2VPAA 1AXJA 3VYAA 2P5ZX 2FG9A 2AQ6A 1WLIA 3ZODA 2HQ9A 3R5ZA 2ARZA 4HMVA 4IRAA 2I51A 3DB0A 4Y9IA 4R82A 3R5WA 1G76A 3EAAA 2X1JA 3RH7A 3TGVA 2ASFA 1TY9A 4HMXA 2ECRA 3ZOEA 1RFEA 2QEAA 3ZOHA 2X1KA 2GJGA 2GUJA 1W3QA 1Y30A 4MTKA 2D37A 1Y12A 2NR4A 4W64A 1USFA 2HTIA 2FURA 4XJ2A 1DNLA 4Z85A 2HHZA 2D36A 4TV4A 4QVBA 3DMBA 1I0RA 3CP3A 2PTFA 2QCKA 2I02A 2OL5A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1WGB A;  2R6V A;  1G78 A;  3A6Q A;  3ZOF A;  3R5R A;  3R5P A;  3VY5 A;  4L82 A;  3VY2 A;  3ZOC A;  5JAB A;  2A2J A;  2Q9K A;  1NRG A;  1CI0 A;  3BPK A;  4F07 A;  3GAS A;  2OU5 A;  3AWH A;  3E4V A;  4YWN A;  4HMW A;  3H96 A;  3SWJ A;  1WV4 A;  2ECU A;  3ZOG A;  4ZKY A;  3K87 A;  4YBN A;  3U5W A;  1USC A;  4HMS A;  1G77 A;  1T9M A;  3A20 A;  1JNW A;  3AMF A;  2ED4 A;  2HQ7 A;  2IAB A;  4HMU A;  3R5Y A;  5CHO A;  1YOA A;  1YLN A;  1W3P A;  3EC6 A;  2HTD A;  1I0S A;  4XHY A;  4N7R C;  3IN6 A;  3BNK A;  3U34 A;  3CB0 A;  5CHE C;  1W3O A;  2IML A;  3DNH A;  3KYF A;  1EJE A;  5BNC A;  3HY8 A;  3FKH A;  4HX6 A;  1W3R A;  3BA3 A;  1FLM A;  1RZ0 A;  1XXO A;  3U0I A;  1WLK A;  2FHQ A;  2D38 A;  3K88 A;  3R5L A;  2IG6 A;  2D5M A;  2E83 A;  2RE7 A;  2RDE A;  2R0X A;  3KYG A;  3B5M A;  1G79 A;  3PFT A;  1W9A A;  4HMT A;  3U35 A;  1RZ1 A;  3A6R A;  3FGE A;  1VL7 A;  3HMZ A;  1XHN A;  3K86 A;  5ESC A;  3F7E A;  3NFW A;  2VPA A;  1AXJ A;  3VYA A;  2FG9 A;  2AQ6 A;  1WLI A;  3ZOD A;  2HQ9 A;  3R5Z A;  2ARZ A;  4HMV A;  4IRA A;  2I51 A;  3DB0 A;  4Y9I A;  4R82 A;  3R5W A;  1G76 A;  2X1J A;  3RH7 A;  3TGV A;  2ASF A;  1TY9 A;  4HMX A;  2ECR A;  3ZOE A;  1RFE A;  2QEA A;  3ZOH A;  2X1K A;  2GJG A;  1W3Q A;  1Y30 A;  2D37 A;  2NR4 A;  4XJ2 A;  1USF A;  2HTI A;  2FUR A;  1DNL A;  4Z85 A;  2HHZ A;  2D36 A;  4QVB A;  3DMB A;  1I0R A;  3CP3 A;  2PTF A;  2QCK A;  2I02 A;  2OL5 A; 
#chains in the Genus database with same CATH topology
 1WGB A;  2R6V A;  1G78 A;  3A6Q A;  3ZOF A;  3R5R A;  3R5P A;  3VY5 A;  4L82 A;  3VY2 A;  2K4Q A;  3ZOC A;  3HE1 A;  5JAB A;  2A2J A;  2Q9K A;  1NRG A;  1CI0 A;  3BPK A;  4F07 A;  3GAS A;  2OU5 A;  3AWH A;  3E4V A;  4YWN A;  4HMW A;  3H96 A;  3SWJ A;  1WV4 A;  2ECU A;  3ZOG A;  4ZKY A;  3K87 A;  4YBN A;  3U5W A;  1USC A;  4HMS A;  1G77 A;  1T9M A;  3A20 A;  1JNW A;  3AMF A;  4UHV A;  2ED4 A;  2HQ7 A;  2IAB A;  4HMU A;  3R5Y A;  5CHO A;  1YOA A;  1YLN A;  1W3P A;  3EC6 A;  2HTD A;  1I0S A;  4XHY A;  4N7R C;  3IN6 A;  3BNK A;  3U34 A;  3CB0 A;  5CHE C;  1W3O A;  2IML A;  3DNH A;  3KYF A;  1EJE A;  5BNC A;  3HY8 A;  3FKH A;  4HX6 A;  1W3R A;  3BA3 A;  1FLM A;  3V4H A;  4HKH A;  1RZ0 A;  1XXO A;  3U0I A;  1WLK A;  2FHQ A;  2D38 A;  3K88 A;  3R5L A;  2IG6 A;  2D5M A;  2E83 A;  2RE7 A;  2RDE A;  2R0X A;  3KYG A;  3B5M A;  1G79 A;  3PFT A;  1W9A A;  4HMT A;  3U35 A;  1RZ1 A;  3A6R A;  3FGE A;  1VL7 A;  3HMZ A;  1XHN A;  2L1T A;  3K86 A;  5ESC A;  3F7E A;  3NFW A;  2VPA A;  1AXJ A;  3VYA A;  2P5Z X;  2FG9 A;  2AQ6 A;  1WLI A;  3ZOD A;  2HQ9 A;  3R5Z A;  2ARZ A;  4HMV A;  4IRA A;  2I51 A;  3DB0 A;  4Y9I A;  4R82 A;  3R5W A;  1G76 A;  3EAA A;  2X1J A;  3RH7 A;  3TGV A;  2ASF A;  1TY9 A;  4HMX A;  2ECR A;  3ZOE A;  1RFE A;  2QEA A;  3ZOH A;  2X1K A;  2GJG A;  2GUJ A;  1W3Q A;  1Y30 A;  4MTK A;  2D37 A;  1Y12 A;  2NR4 A;  4W64 A;  1USF A;  2HTI A;  2FUR A;  4XJ2 A;  1DNL A;  4Z85 A;  2HHZ A;  2D36 A;  4TV4 A;  4QVB A;  3DMB A;  1I0R A;  3CP3 A;  2PTF A;  2QCK A;  2I02 A;  2OL5 A; 
#chains in the Genus database with same CATH homology
 1WGB A;  2R6V A;  1G78 A;  3A6Q A;  3ZOF A;  3R5R A;  3R5P A;  3VY5 A;  4L82 A;  3VY2 A;  3ZOC A;  5JAB A;  2A2J A;  2Q9K A;  1NRG A;  1CI0 A;  3BPK A;  4F07 A;  3GAS A;  2OU5 A;  3AWH A;  3E4V A;  4YWN A;  4HMW A;  3H96 A;  3SWJ A;  1WV4 A;  2ECU A;  3ZOG A;  4ZKY A;  3K87 A;  4YBN A;  3U5W A;  1USC A;  4HMS A;  1G77 A;  1T9M A;  3A20 A;  1JNW A;  3AMF A;  2ED4 A;  2HQ7 A;  2IAB A;  4HMU A;  3R5Y A;  5CHO A;  1YOA A;  1YLN A;  1W3P A;  3EC6 A;  2HTD A;  1I0S A;  4XHY A;  4N7R C;  3IN6 A;  3BNK A;  3U34 A;  3CB0 A;  5CHE C;  1W3O A;  2IML A;  3DNH A;  3KYF A;  1EJE A;  5BNC A;  3HY8 A;  3FKH A;  4HX6 A;  1W3R A;  3BA3 A;  1FLM A;  1RZ0 A;  1XXO A;  3U0I A;  1WLK A;  2FHQ A;  2D38 A;  3K88 A;  3R5L A;  2IG6 A;  2D5M A;  2E83 A;  2RE7 A;  2RDE A;  2R0X A;  3KYG A;  3B5M A;  1G79 A;  3PFT A;  1W9A A;  4HMT A;  3U35 A;  1RZ1 A;  3A6R A;  3FGE A;  1VL7 A;  3HMZ A;  1XHN A;  3K86 A;  5ESC A;  3F7E A;  3NFW A;  2VPA A;  1AXJ A;  3VYA A;  2FG9 A;  2AQ6 A;  1WLI A;  3ZOD A;  2HQ9 A;  3R5Z A;  2ARZ A;  4HMV A;  4IRA A;  2I51 A;  3DB0 A;  4Y9I A;  4R82 A;  3R5W A;  1G76 A;  2X1J A;  3RH7 A;  3TGV A;  2ASF A;  1TY9 A;  4HMX A;  2ECR A;  3ZOE A;  1RFE A;  2QEA A;  3ZOH A;  2X1K A;  2GJG A;  1W3Q A;  1Y30 A;  2D37 A;  2NR4 A;  4XJ2 A;  1USF A;  2HTI A;  2FUR A;  1DNL A;  4Z85 A;  2HHZ A;  2D36 A;  4QVB A;  3DMB A;  1I0R A;  3CP3 A;  2PTF A;  2QCK A;  2I02 A;  2OL5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1AXJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations