1AXJ | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	122
structure length	122
Chain Sequence	MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 122 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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122 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Binding protein
source organism	Desulfovibrio vulgaris str. 'miyazaki f'
publication title	Pathway of chymotrypsin evolution suggested by the structure of the FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F) pubmed doi rcsb
molecule keywords	FMN-BINDING PROTEIN
total genus	32
structure length	122
sequence length	122
ec nomenclature
pdb deposition date	1997-10-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01243	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	1axjA00

3EC6A 3U5WA 4YBNA 3FKHA 3ZOGA 1CI0A 2QEAA 1Y30A 3R5YA 4YWNA 3H96A 1W9AA 4Z85A 4R82A 3ZODA 4XJ2A 1FLMA 1JNWA 4HMUA 4N7RC 4Y9IA 2FHQA 3TGVA 2ECUA 3HMZA 3FGEA 3VYAA 2I02A 3DNHA 3DMBA 2OL5A 3ZOFA 3R5PA 1NRGA 3K88A 2IG6A 3ZOHA 1WGBA 2FURA 3SWJA 1XXOA 3VY2A 5JABA 2HTIA 4HMXA 1G78A 3BPKA 3RH7A 5BNCA 3VY5A 1EJEA 1USFA 2RE7A 3KYFA 4ZKYA 2HTDA 1W3RA 3ZOEA 1XHNA 2A2JA 3R5ZA 1RZ1A 4HMTA 3R5RA 1AXJA 3DB0A 2E83A 5CHEC 5ESCA 3GASA 2HQ7A 3A20A 2D5MA 3BNKA 1WLIA 2HHZA 5CHOA 1YOAA 1YLNA 1I0RA 2IMLA 3K86A 3A6RA 3AMFA 1G79A 3KYGA 1G77A 4XHYA 1G76A 3U0IA 1USCA 2ECRA 1WLKA 3AWHA 3HY8A 4IRAA 4HMWA 2D36A 2R0XA 4F07A 1RZ0A 2I51A 2VPAA 1DNLA 1VL7A 4L82A 3B5MA 3PFTA 2GJGA 4QVBA 2IABA 1RFEA 3CB0A 3IN6A 2ARZA 1TY9A 2AQ6A 1W3QA 3U35A 3F7EA 4HX6A 2PTFA 1W3PA 2RDEA 2X1KA 2R6VA 2ED4A 2NR4A 3K87A 2FG9A 2ASFA 3A6QA 3ZOCA 1T9MA 1W3OA 3E4VA 3R5LA 3CP3A 3BA3A 2D37A 2Q9KA 3U34A 1WV4A 2QCKA 2D38A 4HMVA 4HMSA 2OU5A 1I0SA 2X1JA 3NFWA 2HQ9A 3R5WA
chains in the Genus database with same CATH superfamily

3EC6A 1Y12A 3U5WA 4YBNA 3FKHA 3ZOGA 1CI0A 2QEAA 1Y30A 3R5YA 4YWNA 3H96A 2L1TA 1W9AA 4HKHA 4Z85A 4R82A 3ZODA 4XJ2A 1FLMA 1JNWA 4HMUA 4N7RC 2P5ZX 4Y9IA 2FHQA 3TGVA 2ECUA 3HMZA 3FGEA 4W64A 3VYAA 2I02A 3DNHA 3DMBA 2OL5A 3ZOFA 3R5PA 1NRGA 3K88A 2IG6A 3ZOHA 1WGBA 2X1JA 2FURA 3SWJA 1XXOA 3VY2A 5JABA 2HTIA 4TV4A 4HMXA 1G78A 3BPKA 3RH7A 5BNCA 3VY5A 1EJEA 1USFA 2RE7A 3KYFA 4ZKYA 2HTDA 1W3RA 3ZOEA 1XHNA 2A2JA 3V4HA 3R5ZA 4UHVA 1RZ1A 3EAAA 4HMTA 3R5RA 1AXJA 3DB0A 2E83A 5CHEC 5ESCA 3HE1A 3GASA 2HQ7A 3A20A 2D5MA 3BNKA 1WLIA 2HHZA 5CHOA 1YOAA 1YLNA 2GUJA 1I0RA 2IMLA 3K86A 3A6RA 3AMFA 1G79A 3KYGA 1G77A 4XHYA 1G76A 3U0IA 1USCA 2ECRA 1WLKA 3AWHA 3HY8A 4IRAA 4HMWA 2D36A 2R0XA 4F07A 1RZ0A 2I51A 2VPAA 1DNLA 1VL7A 4L82A 3B5MA 3PFTA 2GJGA 4QVBA 2IABA 3CB0A 3IN6A 2ARZA 1TY9A 2AQ6A 4MTKA 1W3QA 3U35A 3F7EA 4HX6A 2PTFA 1W3PA 2RDEA 2X1KA 2R6VA 2ED4A 2NR4A 3K87A 2FG9A 2ASFA 2K4QA 3A6QA 3ZOCA 1T9MA 1W3OA 3E4VA 3R5LA 3CP3A 3BA3A 2D37A 2Q9KA 3U34A 1WV4A 2QCKA 2D38A 4HMVA 4HMSA 2OU5A 1I0SA 1RFEA 3NFWA 2HQ9A 3R5WA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3EC6 A;  3U5W A;  4YBN A;  3FKH A;  3ZOG A;  1CI0 A;  2QEA A;  1Y30 A;  3R5Y A;  4YWN A;  3H96 A;  1W9A A;  4Z85 A;  4R82 A;  3ZOD A;  4XJ2 A;  1FLM A;  1JNW A;  4HMU A;  4N7R C;  4Y9I A;  2FHQ A;  3TGV A;  2ECU A;  3HMZ A;  3FGE A;  3VYA A;  2I02 A;  3DNH A;  3DMB A;  2OL5 A;  3ZOF A;  3R5P A;  1NRG A;  3K88 A;  2IG6 A;  3ZOH A;  1WGB A;  2FUR A;  3SWJ A;  1XXO A;  3VY2 A;  5JAB A;  2HTI A;  4HMX A;  1G78 A;  3BPK A;  3RH7 A;  5BNC A;  3VY5 A;  1EJE A;  1USF A;  2RE7 A;  3KYF A;  4ZKY A;  2HTD A;  1W3R A;  3ZOE A;  1XHN A;  2A2J A;  3R5Z A;  1RZ1 A;  4HMT A;  3R5R A;  1AXJ A;  3DB0 A;  2E83 A;  5CHE C;  5ESC A;  3GAS A;  2HQ7 A;  3A20 A;  2D5M A;  3BNK A;  1WLI A;  2HHZ A;  5CHO A;  1YOA A;  1YLN A;  1I0R A;  2IML A;  3K86 A;  3A6R A;  3AMF A;  1G79 A;  3KYG A;  1G77 A;  4XHY A;  1G76 A;  3U0I A;  1USC A;  2ECR A;  1WLK A;  3AWH A;  3HY8 A;  4IRA A;  4HMW A;  2D36 A;  2R0X A;  4F07 A;  1RZ0 A;  2I51 A;  2VPA A;  1DNL A;  1VL7 A;  4L82 A;  3B5M A;  3PFT A;  2GJG A;  4QVB A;  2IAB A;  1RFE A;  3CB0 A;  3IN6 A;  2ARZ A;  1TY9 A;  2AQ6 A;  1W3Q A;  3U35 A;  3F7E A;  4HX6 A;  2PTF A;  1W3P A;  2RDE A;  2X1K A;  2R6V A;  2ED4 A;  2NR4 A;  3K87 A;  2FG9 A;  2ASF A;  3A6Q A;  3ZOC A;  1T9M A;  1W3O A;  3E4V A;  3R5L A;  3CP3 A;  3BA3 A;  2D37 A;  2Q9K A;  3U34 A;  1WV4 A;  2QCK A;  2D38 A;  4HMV A;  4HMS A;  2OU5 A;  1I0S A;  2X1J A;  3NFW A;  2HQ9 A;  3R5W A; 
#chains in the Genus database with same CATH topology
 3EC6 A;  1Y12 A;  3U5W A;  4YBN A;  3FKH A;  3ZOG A;  1CI0 A;  2QEA A;  1Y30 A;  3R5Y A;  4YWN A;  3H96 A;  2L1T A;  1W9A A;  4HKH A;  4Z85 A;  4R82 A;  3ZOD A;  4XJ2 A;  1FLM A;  1JNW A;  4HMU A;  4N7R C;  2P5Z X;  4Y9I A;  2FHQ A;  3TGV A;  2ECU A;  3HMZ A;  3FGE A;  4W64 A;  3VYA A;  2I02 A;  3DNH A;  3DMB A;  2OL5 A;  3ZOF A;  3R5P A;  1NRG A;  3K88 A;  2IG6 A;  3ZOH A;  1WGB A;  2X1J A;  2FUR A;  3SWJ A;  1XXO A;  3VY2 A;  5JAB A;  2HTI A;  4TV4 A;  4HMX A;  1G78 A;  3BPK A;  3RH7 A;  5BNC A;  3VY5 A;  1EJE A;  1USF A;  2RE7 A;  3KYF A;  4ZKY A;  2HTD A;  1W3R A;  3ZOE A;  1XHN A;  2A2J A;  3V4H A;  3R5Z A;  4UHV A;  1RZ1 A;  3EAA A;  4HMT A;  3R5R A;  1AXJ A;  3DB0 A;  2E83 A;  5CHE C;  5ESC A;  3HE1 A;  3GAS A;  2HQ7 A;  3A20 A;  2D5M A;  3BNK A;  1WLI A;  2HHZ A;  5CHO A;  1YOA A;  1YLN A;  2GUJ A;  1I0R A;  2IML A;  3K86 A;  3A6R A;  3AMF A;  1G79 A;  3KYG A;  1G77 A;  4XHY A;  1G76 A;  3U0I A;  1USC A;  2ECR A;  1WLK A;  3AWH A;  3HY8 A;  4IRA A;  4HMW A;  2D36 A;  2R0X A;  4F07 A;  1RZ0 A;  2I51 A;  2VPA A;  1DNL A;  1VL7 A;  4L82 A;  3B5M A;  3PFT A;  2GJG A;  4QVB A;  2IAB A;  3CB0 A;  3IN6 A;  2ARZ A;  1TY9 A;  2AQ6 A;  4MTK A;  1W3Q A;  3U35 A;  3F7E A;  4HX6 A;  2PTF A;  1W3P A;  2RDE A;  2X1K A;  2R6V A;  2ED4 A;  2NR4 A;  3K87 A;  2FG9 A;  2ASF A;  2K4Q A;  3A6Q A;  3ZOC A;  1T9M A;  1W3O A;  3E4V A;  3R5L A;  3CP3 A;  3BA3 A;  2D37 A;  2Q9K A;  3U34 A;  1WV4 A;  2QCK A;  2D38 A;  4HMV A;  4HMS A;  2OU5 A;  1I0S A;  1RFE A;  3NFW A;  2HQ9 A;  3R5W A; 
#chains in the Genus database with same CATH homology
 3EC6 A;  3U5W A;  4YBN A;  3FKH A;  3ZOG A;  1CI0 A;  2QEA A;  1Y30 A;  3R5Y A;  4YWN A;  3H96 A;  1W9A A;  4Z85 A;  4R82 A;  3ZOD A;  4XJ2 A;  1FLM A;  1JNW A;  4HMU A;  4N7R C;  4Y9I A;  2FHQ A;  3TGV A;  2ECU A;  3HMZ A;  3FGE A;  3VYA A;  2I02 A;  3DNH A;  3DMB A;  2OL5 A;  3ZOF A;  3R5P A;  1NRG A;  3K88 A;  2IG6 A;  3ZOH A;  1WGB A;  2FUR A;  3SWJ A;  1XXO A;  3VY2 A;  5JAB A;  2HTI A;  4HMX A;  1G78 A;  3BPK A;  3RH7 A;  5BNC A;  3VY5 A;  1EJE A;  1USF A;  2RE7 A;  3KYF A;  4ZKY A;  2HTD A;  1W3R A;  3ZOE A;  1XHN A;  2A2J A;  3R5Z A;  1RZ1 A;  4HMT A;  3R5R A;  1AXJ A;  3DB0 A;  2E83 A;  5CHE C;  5ESC A;  3GAS A;  2HQ7 A;  3A20 A;  2D5M A;  3BNK A;  1WLI A;  2HHZ A;  5CHO A;  1YOA A;  1YLN A;  1I0R A;  2IML A;  3K86 A;  3A6R A;  3AMF A;  1G79 A;  3KYG A;  1G77 A;  4XHY A;  1G76 A;  3U0I A;  1USC A;  2ECR A;  1WLK A;  3AWH A;  3HY8 A;  4IRA A;  4HMW A;  2D36 A;  2R0X A;  4F07 A;  1RZ0 A;  2I51 A;  2VPA A;  1DNL A;  1VL7 A;  4L82 A;  3B5M A;  3PFT A;  2GJG A;  4QVB A;  2IAB A;  1RFE A;  3CB0 A;  3IN6 A;  2ARZ A;  1TY9 A;  2AQ6 A;  1W3Q A;  3U35 A;  3F7E A;  4HX6 A;  2PTF A;  1W3P A;  2RDE A;  2X1K A;  2R6V A;  2ED4 A;  2NR4 A;  3K87 A;  2FG9 A;  2ASF A;  3A6Q A;  3ZOC A;  1T9M A;  1W3O A;  3E4V A;  3R5L A;  3CP3 A;  3BA3 A;  2D37 A;  2Q9K A;  3U34 A;  1WV4 A;  2QCK A;  2D38 A;  4HMV A;  4HMS A;  2OU5 A;  1I0S A;  2X1J A;  3NFW A;  2HQ9 A;  3R5W A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1AXJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations