1AXJ | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	122
structure length	122
Chain Sequence	MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 122 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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122 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Binding protein
source organism	Desulfovibrio vulgaris str. 'miyazaki f'
publication title	Pathway of chymotrypsin evolution suggested by the structure of the FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F) pubmed doi rcsb
molecule keywords	FMN-BINDING PROTEIN
total genus	32
structure length	122
sequence length	122
ec nomenclature
pdb deposition date	1997-10-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01243	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	1axjA00

1USCA 1I0SA 3U5WA 3CB0A 5CHEC 4YBNA 3RH7A 4IRAA 2D36A 2FHQA 2VPAA 3U34A 3SWJA 3TGVA 2A2JA 1I0RA 1Y30A 2HTIA 5BNCA 1WLKA 1XHNA 2IABA 2ECRA 3GASA 3HY8A 1G77A 3K86A 3R5PA 1W3QA 2FURA 5ESCA 4N7RC 2QCKA 3CP3A 4HMVA 3B5MA 4HMXA 5CHOA 3VY2A 4YWNA 3A20A 4F07A 2HQ9A 3NFWA 2PTFA 2I51A 1TY9A 1WLIA 1CI0A 3R5WA 4XJ2A 4QVBA 3ZOHA 4Y9IA 3ZOCA 2HHZA 2D37A 4Z85A 2I02A 4HX6A 2ARZA 4HMSA 3FKHA 3ZODA 1W3PA 4HMUA 1XXOA 2OL5A 2R6VA 1AXJA 2D5MA 1RZ1A 1T9MA 3U35A 3K88A 2AQ6A 3A6QA 2HQ7A 1YLNA 2IG6A 3AMFA 1G76A 3ZOFA 1WV4A 2RE7A 3BNKA 3VY5A 2ASFA 3DB0A 1NRGA 3DMBA 3PFTA 3KYGA 1FLMA 2ED4A 1WGBA 2HTDA 2Q9KA 3EC6A 3KYFA 4ZKYA 4L82A 1G78A 1W9AA 3DNHA 3U0IA 2R0XA 3BPKA 3AWHA 3R5YA 4HMTA 1USFA 3E4VA 3R5ZA 3HMZA 1JNWA 2FG9A 3VYAA 2X1KA 2OU5A 1DNLA 3FGEA 1EJEA 3R5RA 1W3RA 2ECUA 3IN6A 3R5LA 1G79A 2IMLA 2NR4A 2RDEA 1RZ0A 2QEAA 3A6RA 3ZOEA 3F7EA 2X1JA 2GJGA 4HMWA 1RFEA 2D38A 3BA3A 3ZOGA 5JABA 2E83A 1W3OA 1VL7A 3H96A 1YOAA 3K87A 4XHYA 4R82A
chains in the Genus database with same CATH superfamily

1USCA 1I0SA 3U5WA 3CB0A 4W64A 5CHEC 4YBNA 3RH7A 4IRAA 2D36A 2FHQA 4UHVA 2L1TA 2VPAA 3U34A 3SWJA 3TGVA 2A2JA 1I0RA 1Y30A 2HTIA 2P5ZX 5BNCA 1WLKA 1XHNA 2IABA 2ECRA 3GASA 3HY8A 1G77A 3K86A 3R5PA 1W3QA 2FURA 5ESCA 4N7RC 2QCKA 3CP3A 4HMVA 3B5MA 4HMXA 5CHOA 3VY2A 4YWNA 3A20A 4F07A 2HQ9A 3NFWA 2PTFA 2I51A 1TY9A 1WLIA 1CI0A 3R5WA 4XJ2A 4QVBA 3ZOHA 4Y9IA 3ZOCA 2HHZA 2D37A 4Z85A 2I02A 4HX6A 2ARZA 4HMSA 3FKHA 3ZODA 1W3PA 4HMUA 1XXOA 2OL5A 2R6VA 1AXJA 2D5MA 1RZ1A 1T9MA 3U35A 3K88A 2AQ6A 3A6QA 4TV4A 2HQ7A 1YLNA 2IG6A 3AMFA 1G76A 3ZOFA 1WV4A 2RE7A 2K4QA 3BNKA 3VY5A 1Y12A 2ASFA 3DB0A 1NRGA 3DMBA 3PFTA 3KYGA 1FLMA 3V4HA 2ED4A 3HE1A 1WGBA 2HTDA 2Q9KA 3EC6A 3KYFA 4HKHA 4ZKYA 4L82A 1G78A 1W9AA 3DNHA 3U0IA 2R0XA 3BPKA 3AWHA 3R5YA 4HMTA 1USFA 3E4VA 3R5ZA 3HMZA 1JNWA 2FG9A 3VYAA 2X1KA 2OU5A 1DNLA 3FGEA 1EJEA 3R5RA 1W3RA 2ECUA 3IN6A 3R5LA 1G79A 2IMLA 2NR4A 2RDEA 1RZ0A 2QEAA 3A6RA 3ZOEA 3F7EA 2X1JA 2GJGA 2GUJA 4HMWA 1RFEA 2D38A 3BA3A 3ZOGA 5JABA 2E83A 1W3OA 1VL7A 3H96A 1YOAA 3EAAA 3K87A 4XHYA 4R82A 4MTKA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1USC A;  1I0S A;  3U5W A;  3CB0 A;  5CHE C;  4YBN A;  3RH7 A;  4IRA A;  2D36 A;  2FHQ A;  2VPA A;  3U34 A;  3SWJ A;  3TGV A;  2A2J A;  1I0R A;  1Y30 A;  2HTI A;  5BNC A;  1WLK A;  1XHN A;  2IAB A;  2ECR A;  3GAS A;  3HY8 A;  1G77 A;  3K86 A;  3R5P A;  1W3Q A;  2FUR A;  5ESC A;  4N7R C;  2QCK A;  3CP3 A;  4HMV A;  3B5M A;  4HMX A;  5CHO A;  3VY2 A;  4YWN A;  3A20 A;  4F07 A;  2HQ9 A;  3NFW A;  2PTF A;  2I51 A;  1TY9 A;  1WLI A;  1CI0 A;  3R5W A;  4XJ2 A;  4QVB A;  3ZOH A;  4Y9I A;  3ZOC A;  2HHZ A;  2D37 A;  4Z85 A;  2I02 A;  4HX6 A;  2ARZ A;  4HMS A;  3FKH A;  3ZOD A;  1W3P A;  4HMU A;  1XXO A;  2OL5 A;  2R6V A;  1AXJ A;  2D5M A;  1RZ1 A;  1T9M A;  3U35 A;  3K88 A;  2AQ6 A;  3A6Q A;  2HQ7 A;  1YLN A;  2IG6 A;  3AMF A;  1G76 A;  3ZOF A;  1WV4 A;  2RE7 A;  3BNK A;  3VY5 A;  2ASF A;  3DB0 A;  1NRG A;  3DMB A;  3PFT A;  3KYG A;  1FLM A;  2ED4 A;  1WGB A;  2HTD A;  2Q9K A;  3EC6 A;  3KYF A;  4ZKY A;  4L82 A;  1G78 A;  1W9A A;  3DNH A;  3U0I A;  2R0X A;  3BPK A;  3AWH A;  3R5Y A;  4HMT A;  1USF A;  3E4V A;  3R5Z A;  3HMZ A;  1JNW A;  2FG9 A;  3VYA A;  2X1K A;  2OU5 A;  1DNL A;  3FGE A;  1EJE A;  3R5R A;  1W3R A;  2ECU A;  3IN6 A;  3R5L A;  1G79 A;  2IML A;  2NR4 A;  2RDE A;  1RZ0 A;  2QEA A;  3A6R A;  3ZOE A;  3F7E A;  2X1J A;  2GJG A;  4HMW A;  1RFE A;  2D38 A;  3BA3 A;  3ZOG A;  5JAB A;  2E83 A;  1W3O A;  1VL7 A;  3H96 A;  1YOA A;  3K87 A;  4XHY A;  4R82 A; 
#chains in the Genus database with same CATH topology
 1USC A;  1I0S A;  3U5W A;  3CB0 A;  4W64 A;  5CHE C;  4YBN A;  3RH7 A;  4IRA A;  2D36 A;  2FHQ A;  4UHV A;  2L1T A;  2VPA A;  3U34 A;  3SWJ A;  3TGV A;  2A2J A;  1I0R A;  1Y30 A;  2HTI A;  2P5Z X;  5BNC A;  1WLK A;  1XHN A;  2IAB A;  2ECR A;  3GAS A;  3HY8 A;  1G77 A;  3K86 A;  3R5P A;  1W3Q A;  2FUR A;  5ESC A;  4N7R C;  2QCK A;  3CP3 A;  4HMV A;  3B5M A;  4HMX A;  5CHO A;  3VY2 A;  4YWN A;  3A20 A;  4F07 A;  2HQ9 A;  3NFW A;  2PTF A;  2I51 A;  1TY9 A;  1WLI A;  1CI0 A;  3R5W A;  4XJ2 A;  4QVB A;  3ZOH A;  4Y9I A;  3ZOC A;  2HHZ A;  2D37 A;  4Z85 A;  2I02 A;  4HX6 A;  2ARZ A;  4HMS A;  3FKH A;  3ZOD A;  1W3P A;  4HMU A;  1XXO A;  2OL5 A;  2R6V A;  1AXJ A;  2D5M A;  1RZ1 A;  1T9M A;  3U35 A;  3K88 A;  2AQ6 A;  3A6Q A;  4TV4 A;  2HQ7 A;  1YLN A;  2IG6 A;  3AMF A;  1G76 A;  3ZOF A;  1WV4 A;  2RE7 A;  2K4Q A;  3BNK A;  3VY5 A;  1Y12 A;  2ASF A;  3DB0 A;  1NRG A;  3DMB A;  3PFT A;  3KYG A;  1FLM A;  3V4H A;  2ED4 A;  3HE1 A;  1WGB A;  2HTD A;  2Q9K A;  3EC6 A;  3KYF A;  4HKH A;  4ZKY A;  4L82 A;  1G78 A;  1W9A A;  3DNH A;  3U0I A;  2R0X A;  3BPK A;  3AWH A;  3R5Y A;  4HMT A;  1USF A;  3E4V A;  3R5Z A;  3HMZ A;  1JNW A;  2FG9 A;  3VYA A;  2X1K A;  2OU5 A;  1DNL A;  3FGE A;  1EJE A;  3R5R A;  1W3R A;  2ECU A;  3IN6 A;  3R5L A;  1G79 A;  2IML A;  2NR4 A;  2RDE A;  1RZ0 A;  2QEA A;  3A6R A;  3ZOE A;  3F7E A;  2X1J A;  2GJG A;  2GUJ A;  4HMW A;  1RFE A;  2D38 A;  3BA3 A;  3ZOG A;  5JAB A;  2E83 A;  1W3O A;  1VL7 A;  3H96 A;  1YOA A;  3EAA A;  3K87 A;  4XHY A;  4R82 A;  4MTK A; 
#chains in the Genus database with same CATH homology
 1USC A;  1I0S A;  3U5W A;  3CB0 A;  5CHE C;  4YBN A;  3RH7 A;  4IRA A;  2D36 A;  2FHQ A;  2VPA A;  3U34 A;  3SWJ A;  3TGV A;  2A2J A;  1I0R A;  1Y30 A;  2HTI A;  5BNC A;  1WLK A;  1XHN A;  2IAB A;  2ECR A;  3GAS A;  3HY8 A;  1G77 A;  3K86 A;  3R5P A;  1W3Q A;  2FUR A;  5ESC A;  4N7R C;  2QCK A;  3CP3 A;  4HMV A;  3B5M A;  4HMX A;  5CHO A;  3VY2 A;  4YWN A;  3A20 A;  4F07 A;  2HQ9 A;  3NFW A;  2PTF A;  2I51 A;  1TY9 A;  1WLI A;  1CI0 A;  3R5W A;  4XJ2 A;  4QVB A;  3ZOH A;  4Y9I A;  3ZOC A;  2HHZ A;  2D37 A;  4Z85 A;  2I02 A;  4HX6 A;  2ARZ A;  4HMS A;  3FKH A;  3ZOD A;  1W3P A;  4HMU A;  1XXO A;  2OL5 A;  2R6V A;  1AXJ A;  2D5M A;  1RZ1 A;  1T9M A;  3U35 A;  3K88 A;  2AQ6 A;  3A6Q A;  2HQ7 A;  1YLN A;  2IG6 A;  3AMF A;  1G76 A;  3ZOF A;  1WV4 A;  2RE7 A;  3BNK A;  3VY5 A;  2ASF A;  3DB0 A;  1NRG A;  3DMB A;  3PFT A;  3KYG A;  1FLM A;  2ED4 A;  1WGB A;  2HTD A;  2Q9K A;  3EC6 A;  3KYF A;  4ZKY A;  4L82 A;  1G78 A;  1W9A A;  3DNH A;  3U0I A;  2R0X A;  3BPK A;  3AWH A;  3R5Y A;  4HMT A;  1USF A;  3E4V A;  3R5Z A;  3HMZ A;  1JNW A;  2FG9 A;  3VYA A;  2X1K A;  2OU5 A;  1DNL A;  3FGE A;  1EJE A;  3R5R A;  1W3R A;  2ECU A;  3IN6 A;  3R5L A;  1G79 A;  2IML A;  2NR4 A;  2RDE A;  1RZ0 A;  2QEA A;  3A6R A;  3ZOE A;  3F7E A;  2X1J A;  2GJG A;  4HMW A;  1RFE A;  2D38 A;  3BA3 A;  3ZOG A;  5JAB A;  2E83 A;  1W3O A;  1VL7 A;  3H96 A;  1YOA A;  3K87 A;  4XHY A;  4R82 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1AXJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations