1AXJA

Fmn-binding protein from desulfovibrio vulgaris (miyazaki f), nmr, 20 structures
Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
122
structure length
122
Chain Sequence
MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV2 (39-42)S7 (109-120)3H1 (33-35)S2 (27-32)S5 (63-70)AH3 (95-103)S3 (37-38)S4 (43-48)AH2 (52-60)TIV3 (48-51)TI1 (70-73)TVIII1 (75-78)S6 (81-92)TIV5 (104-107)S1 (15-20)AH1 (4-11)TIV1 (22-25)Updating...
connected with : NaN
molecule tags Binding protein
source organism Desulfovibrio vulgaris str. 'miyazaki f'
publication title Pathway of chymotrypsin evolution suggested by the structure of the FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
pubmed doi rcsb
molecule keywords FMN-BINDING PROTEIN
total genus 32
structure length 122
sequence length 122
ec nomenclature
pdb deposition date 1997-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1axjA00
1DNLA 4XJ2A 1W3QA 3DMBA 3R5YA 2PTFA 4Z85A 3A6QA 3A6RA 3CB0A 3ZOHA 1G77A 1XHNA 3A20A 2D37A 5CHEC 5BNCA 2I02A 3GASA 2AQ6A 1WGBA 3ZOFA 1YLNA 3K86A 4HMWA 2VPAA 2RDEA 3K88A 3BNKA 1FLMA 3EC6A 3VY2A 1RZ0A 4XHYA 3ZOEA 3H96A 3R5PA 4F07A 2HQ9A 2D38A 1XXOA 3HY8A 1WLIA 2D5MA 1TY9A 1W3PA 2QEAA 2OL5A 2NR4A 3FKHA 4YWNA 1RZ1A 3CP3A 1CI0A 3TGVA 1EJEA 3AMFA 4HMVA 2X1KA 2GJGA 3K87A 2QCKA 1T9MA 2I51A 2FURA 1G78A 3AWHA 2IMLA 3PFTA 1USFA 1WLKA 3DNHA 5ESCA 3SWJA 1VL7A 1W9AA 1I0RA 3BA3A 3R5RA 3U0IA 1RFEA 2A2JA 2ED4A 3ZOGA 2FG9A 2HQ7A 3HMZA 2HTIA 3ZODA 4Y9IA 2HHZA 3R5ZA 2IG6A 1W3OA 3VY5A 2X1JA 3NFWA 4HMSA 1AXJA 2Q9KA 3ZOCA 3IN6A 2R6VA 4R82A 1YOAA 4N7RC 4YBNA 3B5MA 3BPKA 3F7EA 1WV4A 3KYFA 5CHOA 3VYAA 3R5WA 5JABA 4QVBA 1Y30A 4HX6A 2R0XA 1USCA 4HMTA 1G79A 2E83A 2ECUA 4HMXA 1JNWA 4HMUA 2ARZA 3DB0A 2D36A 3U34A 3E4VA 3KYGA 4ZKYA 1G76A 1W3RA 3FGEA 1I0SA 4IRAA 3R5LA 3RH7A 2RE7A 3U5WA 4L82A 2ECRA 2FHQA 3U35A 2IABA 2OU5A 1NRGA 2HTDA 2ASFA
chains in the Genus database with same CATH superfamily
4TV4A 1DNLA 4XJ2A 2P5ZX 1W3QA 3DMBA 3R5YA 2PTFA 4Z85A 3A6QA 3HE1A 3A6RA 3CB0A 3ZOHA 1G77A 1XHNA 3A20A 2D37A 5CHEC 5BNCA 2I02A 3GASA 2AQ6A 1WGBA 3ZOFA 1YLNA 3K86A 4HMWA 2VPAA 2RDEA 3K88A 3BNKA 2K4QA 1FLMA 3EC6A 3VY2A 1RZ0A 4XHYA 3ZOEA 3H96A 3R5PA 4F07A 2HQ9A 2D38A 1XXOA 3HY8A 1WLIA 2D5MA 1TY9A 1W3PA 2QEAA 2OL5A 2NR4A 3FKHA 4YWNA 1RZ1A 3CP3A 1CI0A 3TGVA 1EJEA 3AMFA 4HMVA 2X1KA 2GJGA 3K87A 2QCKA 1T9MA 2I51A 2FURA 1G78A 3AWHA 2IMLA 3PFTA 1USFA 1WLKA 3DNHA 5ESCA 3SWJA 1VL7A 1W9AA 1I0RA 3BA3A 3R5RA 3U0IA 1RFEA 2A2JA 2ED4A 3ZOGA 2FG9A 1Y12A 2HQ7A 3HMZA 2HTIA 3ZODA 4Y9IA 2HHZA 3R5ZA 2IG6A 1W3OA 3VY5A 2L1TA 2X1JA 3NFWA 4HMSA 1AXJA 2Q9KA 3ZOCA 4HKHA 3IN6A 2R6VA 4R82A 1YOAA 4N7RC 4YBNA 3B5MA 3BPKA 3F7EA 1WV4A 3KYFA 5CHOA 3VYAA 4MTKA 3R5WA 5JABA 4QVBA 1Y30A 2GUJA 4HX6A 4W64A 2R0XA 4UHVA 1USCA 3V4HA 4HMTA 1G79A 2E83A 2ECUA 3EAAA 4HMXA 1JNWA 4HMUA 2ARZA 3DB0A 2D36A 3U34A 3E4VA 3KYGA 4ZKYA 1G76A 1W3RA 3FGEA 1I0SA 4IRAA 3R5LA 3RH7A 2RE7A 3U5WA 4L82A 2ECRA 2FHQA 3U35A 2IABA 2OU5A 1NRGA 2HTDA 2ASFA
chains in the Genus database with same CATH topology
1DNLA 4XJ2A 1W3QA 3DMBA 3R5YA 2PTFA 4Z85A 3A6QA 3A6RA 3CB0A 3ZOHA 1G77A 1XHNA 3A20A 2D37A 5CHEC 5BNCA 2I02A 3GASA 2AQ6A 1WGBA 3ZOFA 1YLNA 3K86A 4HMWA 2VPAA 2RDEA 3K88A 3BNKA 1FLMA 3EC6A 3VY2A 1RZ0A 4XHYA 3ZOEA 3H96A 3R5PA 4F07A 2HQ9A 2D38A 1XXOA 3HY8A 1WLIA 2D5MA 1TY9A 1W3PA 2QEAA 2OL5A 2NR4A 3FKHA 4YWNA 1RZ1A 3CP3A 1CI0A 3TGVA 1EJEA 3AMFA 4HMVA 2X1KA 2GJGA 3K87A 2QCKA 1T9MA 2I51A 2FURA 1G78A 3AWHA 2IMLA 3PFTA 1USFA 1WLKA 3DNHA 5ESCA 3SWJA 1VL7A 1W9AA 1I0RA 3BA3A 3R5RA 3U0IA 1RFEA 2A2JA 2ED4A 3ZOGA 2FG9A 2HQ7A 3HMZA 2HTIA 3ZODA 4Y9IA 2HHZA 3R5ZA 2IG6A 1W3OA 3VY5A 2X1JA 3NFWA 4HMSA 1AXJA 2Q9KA 3ZOCA 3IN6A 2R6VA 4R82A 1YOAA 4N7RC 4YBNA 3B5MA 3BPKA 3F7EA 1WV4A 3KYFA 5CHOA 3VYAA 3R5WA 5JABA 4QVBA 1Y30A 4HX6A 2R0XA 1USCA 4HMTA 1G79A 2E83A 2ECUA 4HMXA 1JNWA 4HMUA 2ARZA 3DB0A 2D36A 3U34A 3E4VA 3KYGA 4ZKYA 1G76A 1W3RA 3FGEA 1I0SA 4IRAA 3R5LA 3RH7A 2RE7A 3U5WA 4L82A 2ECRA 2FHQA 3U35A 2IABA 2OU5A 1NRGA 2HTDA 2ASFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DNL A;  4XJ2 A;  1W3Q A;  3DMB A;  3R5Y A;  2PTF A;  4Z85 A;  3A6Q A;  3A6R A;  3CB0 A;  3ZOH A;  1G77 A;  1XHN A;  3A20 A;  2D37 A;  5CHE C;  5BNC A;  2I02 A;  3GAS A;  2AQ6 A;  1WGB A;  3ZOF A;  1YLN A;  3K86 A;  4HMW A;  2VPA A;  2RDE A;  3K88 A;  3BNK A;  1FLM A;  3EC6 A;  3VY2 A;  1RZ0 A;  4XHY A;  3ZOE A;  3H96 A;  3R5P A;  4F07 A;  2HQ9 A;  2D38 A;  1XXO A;  3HY8 A;  1WLI A;  2D5M A;  1TY9 A;  1W3P A;  2QEA A;  2OL5 A;  2NR4 A;  3FKH A;  4YWN A;  1RZ1 A;  3CP3 A;  1CI0 A;  3TGV A;  1EJE A;  3AMF A;  4HMV A;  2X1K A;  2GJG A;  3K87 A;  2QCK A;  1T9M A;  2I51 A;  2FUR A;  1G78 A;  3AWH A;  2IML A;  3PFT A;  1USF A;  1WLK A;  3DNH A;  5ESC A;  3SWJ A;  1VL7 A;  1W9A A;  1I0R A;  3BA3 A;  3R5R A;  3U0I A;  1RFE A;  2A2J A;  2ED4 A;  3ZOG A;  2FG9 A;  2HQ7 A;  3HMZ A;  2HTI A;  3ZOD A;  4Y9I A;  2HHZ A;  3R5Z A;  2IG6 A;  1W3O A;  3VY5 A;  2X1J A;  3NFW A;  4HMS A;  1AXJ A;  2Q9K A;  3ZOC A;  3IN6 A;  2R6V A;  4R82 A;  1YOA A;  4N7R C;  4YBN A;  3B5M A;  3BPK A;  3F7E A;  1WV4 A;  3KYF A;  5CHO A;  3VYA A;  3R5W A;  5JAB A;  4QVB A;  1Y30 A;  4HX6 A;  2R0X A;  1USC A;  4HMT A;  1G79 A;  2E83 A;  2ECU A;  4HMX A;  1JNW A;  4HMU A;  2ARZ A;  3DB0 A;  2D36 A;  3U34 A;  3E4V A;  3KYG A;  4ZKY A;  1G76 A;  1W3R A;  3FGE A;  1I0S A;  4IRA A;  3R5L A;  3RH7 A;  2RE7 A;  3U5W A;  4L82 A;  2ECR A;  2FHQ A;  3U35 A;  2IAB A;  2OU5 A;  1NRG A;  2HTD A;  2ASF A; 
#chains in the Genus database with same CATH topology
 4TV4 A;  1DNL A;  4XJ2 A;  2P5Z X;  1W3Q A;  3DMB A;  3R5Y A;  2PTF A;  4Z85 A;  3A6Q A;  3HE1 A;  3A6R A;  3CB0 A;  3ZOH A;  1G77 A;  1XHN A;  3A20 A;  2D37 A;  5CHE C;  5BNC A;  2I02 A;  3GAS A;  2AQ6 A;  1WGB A;  3ZOF A;  1YLN A;  3K86 A;  4HMW A;  2VPA A;  2RDE A;  3K88 A;  3BNK A;  2K4Q A;  1FLM A;  3EC6 A;  3VY2 A;  1RZ0 A;  4XHY A;  3ZOE A;  3H96 A;  3R5P A;  4F07 A;  2HQ9 A;  2D38 A;  1XXO A;  3HY8 A;  1WLI A;  2D5M A;  1TY9 A;  1W3P A;  2QEA A;  2OL5 A;  2NR4 A;  3FKH A;  4YWN A;  1RZ1 A;  3CP3 A;  1CI0 A;  3TGV A;  1EJE A;  3AMF A;  4HMV A;  2X1K A;  2GJG A;  3K87 A;  2QCK A;  1T9M A;  2I51 A;  2FUR A;  1G78 A;  3AWH A;  2IML A;  3PFT A;  1USF A;  1WLK A;  3DNH A;  5ESC A;  3SWJ A;  1VL7 A;  1W9A A;  1I0R A;  3BA3 A;  3R5R A;  3U0I A;  1RFE A;  2A2J A;  2ED4 A;  3ZOG A;  2FG9 A;  1Y12 A;  2HQ7 A;  3HMZ A;  2HTI A;  3ZOD A;  4Y9I A;  2HHZ A;  3R5Z A;  2IG6 A;  1W3O A;  3VY5 A;  2L1T A;  2X1J A;  3NFW A;  4HMS A;  1AXJ A;  2Q9K A;  3ZOC A;  4HKH A;  3IN6 A;  2R6V A;  4R82 A;  1YOA A;  4N7R C;  4YBN A;  3B5M A;  3BPK A;  3F7E A;  1WV4 A;  3KYF A;  5CHO A;  3VYA A;  4MTK A;  3R5W A;  5JAB A;  4QVB A;  1Y30 A;  2GUJ A;  4HX6 A;  4W64 A;  2R0X A;  4UHV A;  1USC A;  3V4H A;  4HMT A;  1G79 A;  2E83 A;  2ECU A;  3EAA A;  4HMX A;  1JNW A;  4HMU A;  2ARZ A;  3DB0 A;  2D36 A;  3U34 A;  3E4V A;  3KYG A;  4ZKY A;  1G76 A;  1W3R A;  3FGE A;  1I0S A;  4IRA A;  3R5L A;  3RH7 A;  2RE7 A;  3U5W A;  4L82 A;  2ECR A;  2FHQ A;  3U35 A;  2IAB A;  2OU5 A;  1NRG A;  2HTD A;  2ASF A; 
#chains in the Genus database with same CATH homology
 1DNL A;  4XJ2 A;  1W3Q A;  3DMB A;  3R5Y A;  2PTF A;  4Z85 A;  3A6Q A;  3A6R A;  3CB0 A;  3ZOH A;  1G77 A;  1XHN A;  3A20 A;  2D37 A;  5CHE C;  5BNC A;  2I02 A;  3GAS A;  2AQ6 A;  1WGB A;  3ZOF A;  1YLN A;  3K86 A;  4HMW A;  2VPA A;  2RDE A;  3K88 A;  3BNK A;  1FLM A;  3EC6 A;  3VY2 A;  1RZ0 A;  4XHY A;  3ZOE A;  3H96 A;  3R5P A;  4F07 A;  2HQ9 A;  2D38 A;  1XXO A;  3HY8 A;  1WLI A;  2D5M A;  1TY9 A;  1W3P A;  2QEA A;  2OL5 A;  2NR4 A;  3FKH A;  4YWN A;  1RZ1 A;  3CP3 A;  1CI0 A;  3TGV A;  1EJE A;  3AMF A;  4HMV A;  2X1K A;  2GJG A;  3K87 A;  2QCK A;  1T9M A;  2I51 A;  2FUR A;  1G78 A;  3AWH A;  2IML A;  3PFT A;  1USF A;  1WLK A;  3DNH A;  5ESC A;  3SWJ A;  1VL7 A;  1W9A A;  1I0R A;  3BA3 A;  3R5R A;  3U0I A;  1RFE A;  2A2J A;  2ED4 A;  3ZOG A;  2FG9 A;  2HQ7 A;  3HMZ A;  2HTI A;  3ZOD A;  4Y9I A;  2HHZ A;  3R5Z A;  2IG6 A;  1W3O A;  3VY5 A;  2X1J A;  3NFW A;  4HMS A;  1AXJ A;  2Q9K A;  3ZOC A;  3IN6 A;  2R6V A;  4R82 A;  1YOA A;  4N7R C;  4YBN A;  3B5M A;  3BPK A;  3F7E A;  1WV4 A;  3KYF A;  5CHO A;  3VYA A;  3R5W A;  5JAB A;  4QVB A;  1Y30 A;  4HX6 A;  2R0X A;  1USC A;  4HMT A;  1G79 A;  2E83 A;  2ECU A;  4HMX A;  1JNW A;  4HMU A;  2ARZ A;  3DB0 A;  2D36 A;  3U34 A;  3E4V A;  3KYG A;  4ZKY A;  1G76 A;  1W3R A;  3FGE A;  1I0S A;  4IRA A;  3R5L A;  3RH7 A;  2RE7 A;  3U5W A;  4L82 A;  2ECR A;  2FHQ A;  3U35 A;  2IAB A;  2OU5 A;  1NRG A;  2HTD A;  2ASF A; 
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