1AXJ | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	122
structure length	122
Chain Sequence	MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Binding protein
source organism	Desulfovibrio vulgaris str. 'miyazaki f'
publication title	Pathway of chymotrypsin evolution suggested by the structure of the FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F) pubmed doi rcsb
molecule keywords	FMN-BINDING PROTEIN
total genus	32
structure length	122
sequence length	122
ec nomenclature
pdb deposition date	1997-10-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01243	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	1axjA00

3ZODA 1NRGA 1FLMA 1VL7A 1W3PA 1JNWA 2FG9A 1RZ0A 3VYAA 1YLNA 1WLIA 3SWJA 2GJGA 1G76A 3A6QA 2D38A 2IMLA 3FKHA 4YBNA 4YWNA 2IG6A 2R6VA 4HMTA 2QEAA 1XXOA 3BNKA 3E4VA 4XHYA 3BA3A 3RH7A 3CB0A 3HMZA 2Q9KA 3A6RA 3R5ZA 4N7RC 2X1KA 2VPAA 2ECUA 4HMXA 3ZOFA 3DNHA 3TGVA 3ZOHA 3EC6A 2R0XA 2IABA 2D37A 3PFTA 4ZKYA 4HX6A 3R5PA 4QVBA 2OU5A 1USFA 2FURA 3AMFA 3U5WA 1USCA 1EJEA 5JABA 1WGBA 2RDEA 4XJ2A 3KYFA 2AQ6A 2ASFA 1W3QA 2HTIA 3K87A 1W9AA 1DNLA 2ED4A 4HMWA 1RZ1A 3ZOEA 2OL5A 1RFEA 1AXJA 1YOAA 3F7EA 2HTDA 2RE7A 1W3OA 1I0SA 4IRAA 3U34A 4HMVA 1TY9A 1XHNA 4Z85A 4L82A 2X1JA 2I51A 3KYGA 2NR4A 3H96A 2HQ7A 3ZOGA 1CI0A 3AWHA 3HY8A 2HHZA 2A2JA 3NFWA 3K86A 3B5MA 2QCKA 3A20A 3K88A 3ZOCA 1G78A 1WLKA 2I02A 1Y30A 1T9MA 1G77A 1WV4A 4HMUA 5CHEC 2E83A 3U35A 5BNCA 2ECRA 5ESCA 3VY5A 2HQ9A 2D5MA 3DMBA 3CP3A 3R5WA 1G79A 2ARZA 3VY2A 3R5RA 4F07A 3DB0A 3R5LA 3U0IA 2FHQA 2PTFA 4HMSA 2D36A 3R5YA 4R82A 1W3RA 3GASA 3BPKA 1I0RA 5CHOA 3IN6A 3FGEA 4Y9IA
chains in the Genus database with same CATH superfamily

3ZODA 1NRGA 1FLMA 1VL7A 1W3PA 1JNWA 2FG9A 1RZ0A 3VYAA 1YLNA 1WLIA 3SWJA 2GJGA 1G76A 3A6QA 2D38A 2IMLA 3FKHA 4YBNA 2K4QA 4YWNA 4HKHA 2IG6A 3HE1A 2R6VA 3EAAA 4HMTA 2QEAA 1XXOA 4W64A 3BNKA 3E4VA 4XHYA 3BA3A 3RH7A 3CB0A 3HMZA 2Q9KA 3A6RA 3R5ZA 4N7RC 2X1KA 2VPAA 2ECUA 4HMXA 3ZOFA 3DNHA 3TGVA 3ZOHA 3EC6A 2R0XA 2IABA 2D37A 3PFTA 4ZKYA 4HX6A 3R5PA 4QVBA 2OU5A 4MTKA 1USFA 2FURA 3AMFA 3U5WA 1USCA 1EJEA 5JABA 1WGBA 2RDEA 3V4HA 4XJ2A 3KYFA 2AQ6A 2ASFA 1W3QA 2HTIA 3K87A 1W9AA 4TV4A 1DNLA 2ED4A 4HMWA 1RZ1A 3ZOEA 2OL5A 1RFEA 1AXJA 1YOAA 3F7EA 2HTDA 2RE7A 1W3OA 1I0SA 4IRAA 3U34A 4HMVA 1TY9A 1XHNA 4Z85A 4L82A 2X1JA 2I51A 3KYGA 2NR4A 3H96A 2HQ7A 3ZOGA 1CI0A 1Y12A 3AWHA 3HY8A 2HHZA 2A2JA 3NFWA 3K86A 3B5MA 2QCKA 2L1TA 3A20A 3K88A 3ZOCA 1G78A 1WLKA 2I02A 1Y30A 1T9MA 1G77A 1WV4A 4HMUA 5CHEC 2E83A 3U35A 5BNCA 2ECRA 2P5ZX 5ESCA 3VY5A 2HQ9A 2D5MA 3DMBA 3CP3A 3R5WA 1G79A 2ARZA 3VY2A 3R5RA 4F07A 3DB0A 3R5LA 3U0IA 2FHQA 2PTFA 4HMSA 2D36A 2GUJA 3R5YA 4R82A 4UHVA 1W3RA 3GASA 3BPKA 1I0RA 5CHOA 3IN6A 3FGEA 4Y9IA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3ZOD A;  1NRG A;  1FLM A;  1VL7 A;  1W3P A;  1JNW A;  2FG9 A;  1RZ0 A;  3VYA A;  1YLN A;  1WLI A;  3SWJ A;  2GJG A;  1G76 A;  3A6Q A;  2D38 A;  2IML A;  3FKH A;  4YBN A;  4YWN A;  2IG6 A;  2R6V A;  4HMT A;  2QEA A;  1XXO A;  3BNK A;  3E4V A;  4XHY A;  3BA3 A;  3RH7 A;  3CB0 A;  3HMZ A;  2Q9K A;  3A6R A;  3R5Z A;  4N7R C;  2X1K A;  2VPA A;  2ECU A;  4HMX A;  3ZOF A;  3DNH A;  3TGV A;  3ZOH A;  3EC6 A;  2R0X A;  2IAB A;  2D37 A;  3PFT A;  4ZKY A;  4HX6 A;  3R5P A;  4QVB A;  2OU5 A;  1USF A;  2FUR A;  3AMF A;  3U5W A;  1USC A;  1EJE A;  5JAB A;  1WGB A;  2RDE A;  4XJ2 A;  3KYF A;  2AQ6 A;  2ASF A;  1W3Q A;  2HTI A;  3K87 A;  1W9A A;  1DNL A;  2ED4 A;  4HMW A;  1RZ1 A;  3ZOE A;  2OL5 A;  1RFE A;  1AXJ A;  1YOA A;  3F7E A;  2HTD A;  2RE7 A;  1W3O A;  1I0S A;  4IRA A;  3U34 A;  4HMV A;  1TY9 A;  1XHN A;  4Z85 A;  4L82 A;  2X1J A;  2I51 A;  3KYG A;  2NR4 A;  3H96 A;  2HQ7 A;  3ZOG A;  1CI0 A;  3AWH A;  3HY8 A;  2HHZ A;  2A2J A;  3NFW A;  3K86 A;  3B5M A;  2QCK A;  3A20 A;  3K88 A;  3ZOC A;  1G78 A;  1WLK A;  2I02 A;  1Y30 A;  1T9M A;  1G77 A;  1WV4 A;  4HMU A;  5CHE C;  2E83 A;  3U35 A;  5BNC A;  2ECR A;  5ESC A;  3VY5 A;  2HQ9 A;  2D5M A;  3DMB A;  3CP3 A;  3R5W A;  1G79 A;  2ARZ A;  3VY2 A;  3R5R A;  4F07 A;  3DB0 A;  3R5L A;  3U0I A;  2FHQ A;  2PTF A;  4HMS A;  2D36 A;  3R5Y A;  4R82 A;  1W3R A;  3GAS A;  3BPK A;  1I0R A;  5CHO A;  3IN6 A;  3FGE A;  4Y9I A; 
#chains in the Genus database with same CATH topology
 3ZOD A;  1NRG A;  1FLM A;  1VL7 A;  1W3P A;  1JNW A;  2FG9 A;  1RZ0 A;  3VYA A;  1YLN A;  1WLI A;  3SWJ A;  2GJG A;  1G76 A;  3A6Q A;  2D38 A;  2IML A;  3FKH A;  4YBN A;  2K4Q A;  4YWN A;  4HKH A;  2IG6 A;  3HE1 A;  2R6V A;  3EAA A;  4HMT A;  2QEA A;  1XXO A;  4W64 A;  3BNK A;  3E4V A;  4XHY A;  3BA3 A;  3RH7 A;  3CB0 A;  3HMZ A;  2Q9K A;  3A6R A;  3R5Z A;  4N7R C;  2X1K A;  2VPA A;  2ECU A;  4HMX A;  3ZOF A;  3DNH A;  3TGV A;  3ZOH A;  3EC6 A;  2R0X A;  2IAB A;  2D37 A;  3PFT A;  4ZKY A;  4HX6 A;  3R5P A;  4QVB A;  2OU5 A;  4MTK A;  1USF A;  2FUR A;  3AMF A;  3U5W A;  1USC A;  1EJE A;  5JAB A;  1WGB A;  2RDE A;  3V4H A;  4XJ2 A;  3KYF A;  2AQ6 A;  2ASF A;  1W3Q A;  2HTI A;  3K87 A;  1W9A A;  4TV4 A;  1DNL A;  2ED4 A;  4HMW A;  1RZ1 A;  3ZOE A;  2OL5 A;  1RFE A;  1AXJ A;  1YOA A;  3F7E A;  2HTD A;  2RE7 A;  1W3O A;  1I0S A;  4IRA A;  3U34 A;  4HMV A;  1TY9 A;  1XHN A;  4Z85 A;  4L82 A;  2X1J A;  2I51 A;  3KYG A;  2NR4 A;  3H96 A;  2HQ7 A;  3ZOG A;  1CI0 A;  1Y12 A;  3AWH A;  3HY8 A;  2HHZ A;  2A2J A;  3NFW A;  3K86 A;  3B5M A;  2QCK A;  2L1T A;  3A20 A;  3K88 A;  3ZOC A;  1G78 A;  1WLK A;  2I02 A;  1Y30 A;  1T9M A;  1G77 A;  1WV4 A;  4HMU A;  5CHE C;  2E83 A;  3U35 A;  5BNC A;  2ECR A;  2P5Z X;  5ESC A;  3VY5 A;  2HQ9 A;  2D5M A;  3DMB A;  3CP3 A;  3R5W A;  1G79 A;  2ARZ A;  3VY2 A;  3R5R A;  4F07 A;  3DB0 A;  3R5L A;  3U0I A;  2FHQ A;  2PTF A;  4HMS A;  2D36 A;  2GUJ A;  3R5Y A;  4R82 A;  4UHV A;  1W3R A;  3GAS A;  3BPK A;  1I0R A;  5CHO A;  3IN6 A;  3FGE A;  4Y9I A; 
#chains in the Genus database with same CATH homology
 3ZOD A;  1NRG A;  1FLM A;  1VL7 A;  1W3P A;  1JNW A;  2FG9 A;  1RZ0 A;  3VYA A;  1YLN A;  1WLI A;  3SWJ A;  2GJG A;  1G76 A;  3A6Q A;  2D38 A;  2IML A;  3FKH A;  4YBN A;  4YWN A;  2IG6 A;  2R6V A;  4HMT A;  2QEA A;  1XXO A;  3BNK A;  3E4V A;  4XHY A;  3BA3 A;  3RH7 A;  3CB0 A;  3HMZ A;  2Q9K A;  3A6R A;  3R5Z A;  4N7R C;  2X1K A;  2VPA A;  2ECU A;  4HMX A;  3ZOF A;  3DNH A;  3TGV A;  3ZOH A;  3EC6 A;  2R0X A;  2IAB A;  2D37 A;  3PFT A;  4ZKY A;  4HX6 A;  3R5P A;  4QVB A;  2OU5 A;  1USF A;  2FUR A;  3AMF A;  3U5W A;  1USC A;  1EJE A;  5JAB A;  1WGB A;  2RDE A;  4XJ2 A;  3KYF A;  2AQ6 A;  2ASF A;  1W3Q A;  2HTI A;  3K87 A;  1W9A A;  1DNL A;  2ED4 A;  4HMW A;  1RZ1 A;  3ZOE A;  2OL5 A;  1RFE A;  1AXJ A;  1YOA A;  3F7E A;  2HTD A;  2RE7 A;  1W3O A;  1I0S A;  4IRA A;  3U34 A;  4HMV A;  1TY9 A;  1XHN A;  4Z85 A;  4L82 A;  2X1J A;  2I51 A;  3KYG A;  2NR4 A;  3H96 A;  2HQ7 A;  3ZOG A;  1CI0 A;  3AWH A;  3HY8 A;  2HHZ A;  2A2J A;  3NFW A;  3K86 A;  3B5M A;  2QCK A;  3A20 A;  3K88 A;  3ZOC A;  1G78 A;  1WLK A;  2I02 A;  1Y30 A;  1T9M A;  1G77 A;  1WV4 A;  4HMU A;  5CHE C;  2E83 A;  3U35 A;  5BNC A;  2ECR A;  5ESC A;  3VY5 A;  2HQ9 A;  2D5M A;  3DMB A;  3CP3 A;  3R5W A;  1G79 A;  2ARZ A;  3VY2 A;  3R5R A;  4F07 A;  3DB0 A;  3R5L A;  3U0I A;  2FHQ A;  2PTF A;  4HMS A;  2D36 A;  3R5Y A;  4R82 A;  1W3R A;  3GAS A;  3BPK A;  1I0R A;  5CHO A;  3IN6 A;  3FGE A;  4Y9I A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1AXJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations