1AXJ | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	122
structure length	122
Chain Sequence	MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 122 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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122 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Binding protein
source organism	Desulfovibrio vulgaris str. 'miyazaki f'
publication title	Pathway of chymotrypsin evolution suggested by the structure of the FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F) pubmed doi rcsb
molecule keywords	FMN-BINDING PROTEIN
total genus	32
structure length	122
sequence length	122
ec nomenclature
pdb deposition date	1997-10-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01243	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	1axjA00

2HTIA 1WGBA 2A2JA 3A20A 2FHQA 2HHZA 3BPKA 1NRGA 3BA3A 1RFEA 2RDEA 4HMVA 1WLKA 4YBNA 2E83A 2QEAA 3ZOGA 3AWHA 3R5LA 1AXJA 4L82A 4HX6A 1YOAA 5CHOA 5BNCA 1RZ1A 1W3QA 3U0IA 5JABA 2IG6A 3U34A 3RH7A 1USCA 3SWJA 2FG9A 4N7RC 1I0SA 3HY8A 1USFA 2ARZA 2X1KA 3ZOEA 3BNKA 4HMXA 4IRAA 2ECUA 4HMUA 3U5WA 1XXOA 1G79A 3H96A 4R82A 3KYGA 4HMTA 1VL7A 1W9AA 1YLNA 2VPAA 3AMFA 3VY2A 4Y9IA 3VY5A 3FGEA 3GASA 3VYAA 4HMWA 3TGVA 1TY9A 3A6QA 2ECRA 1G77A 2AQ6A 2ED4A 3U35A 3R5PA 2RE7A 5ESCA 1T9MA 3FKHA 3ZOFA 3E4VA 3KYFA 2D38A 3F7EA 4QVBA 3R5WA 3B5MA 1I0RA 3K86A 2IABA 4XJ2A 3K87A 2ASFA 1WV4A 2IMLA 1XHNA 4Z85A 1W3RA 1W3PA 2HQ9A 3CB0A 2HQ7A 2I51A 3A6RA 2GJGA 3IN6A 4YWNA 3R5ZA 3NFWA 3EC6A 4ZKYA 1FLMA 1G78A 3PFTA 1RZ0A 2R0XA 1W3OA 3HMZA 2OL5A 3R5RA 1WLIA 2FURA 3R5YA 4F07A 3CP3A 2PTFA 1JNWA 2I02A 3K88A 1DNLA 3DNHA 2D5MA 2QCKA 2Q9KA 2D36A 1EJEA 2NR4A 4HMSA 1CI0A 3ZODA 2R6VA 2OU5A 3DMBA 2D37A 2HTDA 4XHYA 1G76A 3ZOHA 3ZOCA 2X1JA 1Y30A 3DB0A 5CHEC
chains in the Genus database with same CATH superfamily

2HTIA 3EAAA 1WGBA 2A2JA 3A20A 2FHQA 2HHZA 3BPKA 2L1TA 1NRGA 3BA3A 1RFEA 1Y12A 4MTKA 2RDEA 4HMVA 1WLKA 4YBNA 2E83A 2QEAA 3ZOGA 3AWHA 3R5LA 1AXJA 4L82A 4HX6A 2GUJA 1YOAA 5CHOA 5BNCA 1RZ1A 1W3QA 3U0IA 5JABA 2IG6A 3U34A 3RH7A 1USCA 3HE1A 3SWJA 2FG9A 3V4HA 4N7RC 1I0SA 3HY8A 1USFA 2ARZA 2X1KA 3ZOEA 3BNKA 4HMXA 4IRAA 2ECUA 4HMUA 3U5WA 4TV4A 1XXOA 1G79A 3H96A 4R82A 3KYGA 4HMTA 1VL7A 1W9AA 1YLNA 2VPAA 3AMFA 3VY2A 4Y9IA 3VY5A 3FGEA 3GASA 3VYAA 2P5ZX 4HMWA 3TGVA 1TY9A 3A6QA 2ECRA 4UHVA 4W64A 1G77A 2AQ6A 2ED4A 3U35A 3R5PA 2RE7A 5ESCA 1T9MA 3FKHA 3ZOFA 3E4VA 3KYFA 2D38A 3F7EA 4QVBA 3R5WA 3B5MA 1I0RA 3K86A 2IABA 4XJ2A 3K87A 2ASFA 1WV4A 2IMLA 1XHNA 4Z85A 1W3RA 1W3PA 2HQ9A 3CB0A 2HQ7A 2I51A 3A6RA 2GJGA 3IN6A 4YWNA 3R5ZA 3NFWA 3EC6A 4ZKYA 1FLMA 1G78A 3PFTA 1RZ0A 2R0XA 1W3OA 3HMZA 2OL5A 3R5RA 1WLIA 2FURA 3R5YA 4F07A 3CP3A 2PTFA 1JNWA 2I02A 3K88A 1DNLA 3DNHA 2D5MA 2QCKA 2Q9KA 2D36A 1EJEA 4HKHA 2NR4A 4HMSA 1CI0A 3ZODA 2R6VA 2OU5A 3DMBA 2D37A 2HTDA 4XHYA 1G76A 3ZOHA 3ZOCA 2X1JA 2K4QA 1Y30A 3DB0A 5CHEC
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2HTI A;  1WGB A;  2A2J A;  3A20 A;  2FHQ A;  2HHZ A;  3BPK A;  1NRG A;  3BA3 A;  1RFE A;  2RDE A;  4HMV A;  1WLK A;  4YBN A;  2E83 A;  2QEA A;  3ZOG A;  3AWH A;  3R5L A;  1AXJ A;  4L82 A;  4HX6 A;  1YOA A;  5CHO A;  5BNC A;  1RZ1 A;  1W3Q A;  3U0I A;  5JAB A;  2IG6 A;  3U34 A;  3RH7 A;  1USC A;  3SWJ A;  2FG9 A;  4N7R C;  1I0S A;  3HY8 A;  1USF A;  2ARZ A;  2X1K A;  3ZOE A;  3BNK A;  4HMX A;  4IRA A;  2ECU A;  4HMU A;  3U5W A;  1XXO A;  1G79 A;  3H96 A;  4R82 A;  3KYG A;  4HMT A;  1VL7 A;  1W9A A;  1YLN A;  2VPA A;  3AMF A;  3VY2 A;  4Y9I A;  3VY5 A;  3FGE A;  3GAS A;  3VYA A;  4HMW A;  3TGV A;  1TY9 A;  3A6Q A;  2ECR A;  1G77 A;  2AQ6 A;  2ED4 A;  3U35 A;  3R5P A;  2RE7 A;  5ESC A;  1T9M A;  3FKH A;  3ZOF A;  3E4V A;  3KYF A;  2D38 A;  3F7E A;  4QVB A;  3R5W A;  3B5M A;  1I0R A;  3K86 A;  2IAB A;  4XJ2 A;  3K87 A;  2ASF A;  1WV4 A;  2IML A;  1XHN A;  4Z85 A;  1W3R A;  1W3P A;  2HQ9 A;  3CB0 A;  2HQ7 A;  2I51 A;  3A6R A;  2GJG A;  3IN6 A;  4YWN A;  3R5Z A;  3NFW A;  3EC6 A;  4ZKY A;  1FLM A;  1G78 A;  3PFT A;  1RZ0 A;  2R0X A;  1W3O A;  3HMZ A;  2OL5 A;  3R5R A;  1WLI A;  2FUR A;  3R5Y A;  4F07 A;  3CP3 A;  2PTF A;  1JNW A;  2I02 A;  3K88 A;  1DNL A;  3DNH A;  2D5M A;  2QCK A;  2Q9K A;  2D36 A;  1EJE A;  2NR4 A;  4HMS A;  1CI0 A;  3ZOD A;  2R6V A;  2OU5 A;  3DMB A;  2D37 A;  2HTD A;  4XHY A;  1G76 A;  3ZOH A;  3ZOC A;  2X1J A;  1Y30 A;  3DB0 A;  5CHE C; 
#chains in the Genus database with same CATH topology
 2HTI A;  3EAA A;  1WGB A;  2A2J A;  3A20 A;  2FHQ A;  2HHZ A;  3BPK A;  2L1T A;  1NRG A;  3BA3 A;  1RFE A;  1Y12 A;  4MTK A;  2RDE A;  4HMV A;  1WLK A;  4YBN A;  2E83 A;  2QEA A;  3ZOG A;  3AWH A;  3R5L A;  1AXJ A;  4L82 A;  4HX6 A;  2GUJ A;  1YOA A;  5CHO A;  5BNC A;  1RZ1 A;  1W3Q A;  3U0I A;  5JAB A;  2IG6 A;  3U34 A;  3RH7 A;  1USC A;  3HE1 A;  3SWJ A;  2FG9 A;  3V4H A;  4N7R C;  1I0S A;  3HY8 A;  1USF A;  2ARZ A;  2X1K A;  3ZOE A;  3BNK A;  4HMX A;  4IRA A;  2ECU A;  4HMU A;  3U5W A;  4TV4 A;  1XXO A;  1G79 A;  3H96 A;  4R82 A;  3KYG A;  4HMT A;  1VL7 A;  1W9A A;  1YLN A;  2VPA A;  3AMF A;  3VY2 A;  4Y9I A;  3VY5 A;  3FGE A;  3GAS A;  3VYA A;  2P5Z X;  4HMW A;  3TGV A;  1TY9 A;  3A6Q A;  2ECR A;  4UHV A;  4W64 A;  1G77 A;  2AQ6 A;  2ED4 A;  3U35 A;  3R5P A;  2RE7 A;  5ESC A;  1T9M A;  3FKH A;  3ZOF A;  3E4V A;  3KYF A;  2D38 A;  3F7E A;  4QVB A;  3R5W A;  3B5M A;  1I0R A;  3K86 A;  2IAB A;  4XJ2 A;  3K87 A;  2ASF A;  1WV4 A;  2IML A;  1XHN A;  4Z85 A;  1W3R A;  1W3P A;  2HQ9 A;  3CB0 A;  2HQ7 A;  2I51 A;  3A6R A;  2GJG A;  3IN6 A;  4YWN A;  3R5Z A;  3NFW A;  3EC6 A;  4ZKY A;  1FLM A;  1G78 A;  3PFT A;  1RZ0 A;  2R0X A;  1W3O A;  3HMZ A;  2OL5 A;  3R5R A;  1WLI A;  2FUR A;  3R5Y A;  4F07 A;  3CP3 A;  2PTF A;  1JNW A;  2I02 A;  3K88 A;  1DNL A;  3DNH A;  2D5M A;  2QCK A;  2Q9K A;  2D36 A;  1EJE A;  4HKH A;  2NR4 A;  4HMS A;  1CI0 A;  3ZOD A;  2R6V A;  2OU5 A;  3DMB A;  2D37 A;  2HTD A;  4XHY A;  1G76 A;  3ZOH A;  3ZOC A;  2X1J A;  2K4Q A;  1Y30 A;  3DB0 A;  5CHE C; 
#chains in the Genus database with same CATH homology
 2HTI A;  1WGB A;  2A2J A;  3A20 A;  2FHQ A;  2HHZ A;  3BPK A;  1NRG A;  3BA3 A;  1RFE A;  2RDE A;  4HMV A;  1WLK A;  4YBN A;  2E83 A;  2QEA A;  3ZOG A;  3AWH A;  3R5L A;  1AXJ A;  4L82 A;  4HX6 A;  1YOA A;  5CHO A;  5BNC A;  1RZ1 A;  1W3Q A;  3U0I A;  5JAB A;  2IG6 A;  3U34 A;  3RH7 A;  1USC A;  3SWJ A;  2FG9 A;  4N7R C;  1I0S A;  3HY8 A;  1USF A;  2ARZ A;  2X1K A;  3ZOE A;  3BNK A;  4HMX A;  4IRA A;  2ECU A;  4HMU A;  3U5W A;  1XXO A;  1G79 A;  3H96 A;  4R82 A;  3KYG A;  4HMT A;  1VL7 A;  1W9A A;  1YLN A;  2VPA A;  3AMF A;  3VY2 A;  4Y9I A;  3VY5 A;  3FGE A;  3GAS A;  3VYA A;  4HMW A;  3TGV A;  1TY9 A;  3A6Q A;  2ECR A;  1G77 A;  2AQ6 A;  2ED4 A;  3U35 A;  3R5P A;  2RE7 A;  5ESC A;  1T9M A;  3FKH A;  3ZOF A;  3E4V A;  3KYF A;  2D38 A;  3F7E A;  4QVB A;  3R5W A;  3B5M A;  1I0R A;  3K86 A;  2IAB A;  4XJ2 A;  3K87 A;  2ASF A;  1WV4 A;  2IML A;  1XHN A;  4Z85 A;  1W3R A;  1W3P A;  2HQ9 A;  3CB0 A;  2HQ7 A;  2I51 A;  3A6R A;  2GJG A;  3IN6 A;  4YWN A;  3R5Z A;  3NFW A;  3EC6 A;  4ZKY A;  1FLM A;  1G78 A;  3PFT A;  1RZ0 A;  2R0X A;  1W3O A;  3HMZ A;  2OL5 A;  3R5R A;  1WLI A;  2FUR A;  3R5Y A;  4F07 A;  3CP3 A;  2PTF A;  1JNW A;  2I02 A;  3K88 A;  1DNL A;  3DNH A;  2D5M A;  2QCK A;  2Q9K A;  2D36 A;  1EJE A;  2NR4 A;  4HMS A;  1CI0 A;  3ZOD A;  2R6V A;  2OU5 A;  3DMB A;  2D37 A;  2HTD A;  4XHY A;  1G76 A;  3ZOH A;  3ZOC A;  2X1J A;  1Y30 A;  3DB0 A;  5CHE C;

1FLMA 1WLIA 1WLKA 2E83A 3A20A 3A6QA 3A6RA 3AMFA 3AWHA
similar chains in the Genus database (40% sequence similarity)

None
similar chains in the pdb database (40% sequence similarity)

#similar chains in the Genus database (40% sequence similarity)
1FLM A; 1WLI A; 1WLK A; 2E83 A; 3A20 A; 3A6Q A; 3A6R A; 3AMF A; 3AWH A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)

1AXJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations