2AQ6A

X-ray crystal structure of mycobacterium tuberculosis pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 1.7 a resolution
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
143
structure length
143
Chain Sequence
VFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of Mycobacterium tuberculosispyridoxine 5'-phosphate oxidase and its complexes with flavin mononucleotide and pyridoxal 5'-phosphate.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Mycobacterium tuberculosis
molecule keywords PYRIDOXINE 5'-PHOSPHATE OXIDASE
total genus 40
structure length 143
sequence length 143
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-08-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2aq6A00
3E4VA 1TY9A 4XJ2A 2RE7A 3DNHA 1W3RA 3SWJA 2OU5A 4HMVA 2VPAA 2IABA 2HHZA 2X1KA 2RDEA 1RFEA 4HMUA 1NRGA 3PFTA 1Y30A 4HMWA 4Z85A 2PTFA 2D36A 2FURA 2R0XA 3BPKA 3K87A 3ZOGA 3CP3A 2QCKA 2I02A 2D37A 3A20A 3H96A 4Y9IA 3R5YA 4YWNA 3R5LA 1W3OA 1G76A 3U5WA 3ZOEA 2QEAA 3ZOFA 2D5MA 4F07A 2IG6A 4N7RC 3U0IA 5CHOA 1W9AA 3NFWA 3FGEA 4R82A 2IMLA 1WLKA 1I0SA 4HMTA 1USFA 4HX6A 1T9MA 3R5PA 1WLIA 1YLNA 3DMBA 3BA3A 3F7EA 3HMZA 3B5MA 2GJGA 2NR4A 1I0RA 3BNKA 1G78A 1USCA 1AXJA 5BNCA 4L82A 1RZ1A 3KYFA 2OL5A 2ARZA 3R5WA 2AQ6A 3A6RA 2D38A 3CB0A 4QVBA 3IN6A 1EJEA 3DB0A 4YBNA 3ZODA 1CI0A 1DNLA 2HQ7A 2X1JA 3AMFA 2HTDA 5CHEC 2HTIA 3U35A 2ED4A 1FLMA 3HY8A 2I51A 2FG9A 2ASFA 4ZKYA 3ZOCA 2A2JA 3AWHA 1G77A 3R5ZA 3A6QA 1XXOA 1JNWA 2Q9KA 1WGBA 2HQ9A 1YOAA 3EC6A 3TGVA 1VL7A 1W3PA 1WV4A 3ZOHA 4XHYA 3K88A 4HMSA 3R5RA 2ECRA 2FHQA 4HMXA 3U34A 3VYAA 2E83A 3VY5A 3VY2A 1RZ0A 3FKHA 5ESCA 3GASA 1W3QA 2ECUA 1XHNA 3K86A 2R6VA 1G79A 3KYGA 3RH7A 4IRAA 5JABA
chains in the Genus database with same CATH superfamily
3E4VA 1TY9A 4XJ2A 2RE7A 3DNHA 1W3RA 2L1TA 3SWJA 2K4QA 2OU5A 4HMVA 2VPAA 2IABA 2HHZA 2X1KA 2RDEA 1RFEA 4HMUA 1NRGA 3PFTA 1Y30A 4HMWA 4Z85A 2PTFA 2D36A 2FURA 2R0XA 3BPKA 3K87A 3ZOGA 3CP3A 2QCKA 2I02A 2D37A 3A20A 3H96A 4Y9IA 3R5YA 4YWNA 3R5LA 1W3OA 1G76A 3U5WA 3ZOEA 2QEAA 3ZOFA 2D5MA 4F07A 2IG6A 4N7RC 3V4HA 3U0IA 5CHOA 1W9AA 3NFWA 3FGEA 4R82A 2IMLA 4W64A 1WLKA 1I0SA 4HMTA 4MTKA 1USFA 4HX6A 1T9MA 3R5PA 1WLIA 1YLNA 3DMBA 2P5ZX 3BA3A 3F7EA 3HMZA 3B5MA 2GJGA 2NR4A 4TV4A 4HKHA 1I0RA 3BNKA 1G78A 1USCA 1AXJA 5BNCA 1Y12A 4L82A 1RZ1A 3KYFA 2OL5A 2ARZA 3R5WA 2AQ6A 3A6RA 2D38A 3CB0A 4QVBA 3IN6A 1EJEA 3DB0A 4YBNA 3ZODA 1CI0A 1DNLA 2HQ7A 2X1JA 3AMFA 2HTDA 5CHEC 2HTIA 3U35A 2ED4A 1FLMA 3HY8A 2I51A 2FG9A 2ASFA 4ZKYA 3ZOCA 2A2JA 3AWHA 1G77A 3R5ZA 3A6QA 2GUJA 1XXOA 1JNWA 2Q9KA 1WGBA 2HQ9A 1YOAA 3EC6A 3TGVA 3EAAA 1VL7A 1W3PA 1WV4A 4UHVA 3ZOHA 4XHYA 3K88A 4HMSA 3R5RA 2ECRA 2FHQA 4HMXA 3U34A 3VYAA 2E83A 3VY5A 3VY2A 1RZ0A 3FKHA 5ESCA 3GASA 1W3QA 2ECUA 1XHNA 3K86A 2R6VA 3HE1A 1G79A 3KYGA 3RH7A 4IRAA 5JABA
chains in the Genus database with same CATH topology
3E4VA 1TY9A 4XJ2A 2RE7A 3DNHA 1W3RA 3SWJA 2OU5A 4HMVA 2VPAA 2IABA 2HHZA 2X1KA 2RDEA 1RFEA 4HMUA 1NRGA 3PFTA 1Y30A 4HMWA 4Z85A 2PTFA 2D36A 2FURA 2R0XA 3BPKA 3K87A 3ZOGA 3CP3A 2QCKA 2I02A 2D37A 3A20A 3H96A 4Y9IA 3R5YA 4YWNA 3R5LA 1W3OA 1G76A 3U5WA 3ZOEA 2QEAA 3ZOFA 2D5MA 4F07A 2IG6A 4N7RC 3U0IA 5CHOA 1W9AA 3NFWA 3FGEA 4R82A 2IMLA 1WLKA 1I0SA 4HMTA 1USFA 4HX6A 1T9MA 3R5PA 1WLIA 1YLNA 3DMBA 3BA3A 3F7EA 3HMZA 3B5MA 2GJGA 2NR4A 1I0RA 3BNKA 1G78A 1USCA 1AXJA 5BNCA 4L82A 1RZ1A 3KYFA 2OL5A 2ARZA 3R5WA 2AQ6A 3A6RA 2D38A 3CB0A 4QVBA 3IN6A 1EJEA 3DB0A 4YBNA 3ZODA 1CI0A 1DNLA 2HQ7A 2X1JA 3AMFA 2HTDA 5CHEC 2HTIA 3U35A 2ED4A 1FLMA 3HY8A 2I51A 2FG9A 2ASFA 4ZKYA 3ZOCA 2A2JA 3AWHA 1G77A 3R5ZA 3A6QA 1XXOA 1JNWA 2Q9KA 1WGBA 2HQ9A 1YOAA 3EC6A 3TGVA 1VL7A 1W3PA 1WV4A 3ZOHA 4XHYA 3K88A 4HMSA 3R5RA 2ECRA 2FHQA 4HMXA 3U34A 3VYAA 2E83A 3VY5A 3VY2A 1RZ0A 3FKHA 5ESCA 3GASA 1W3QA 2ECUA 1XHNA 3K86A 2R6VA 1G79A 3KYGA 3RH7A 4IRAA 5JABA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E4V A;  1TY9 A;  4XJ2 A;  2RE7 A;  3DNH A;  1W3R A;  3SWJ A;  2OU5 A;  4HMV A;  2VPA A;  2IAB A;  2HHZ A;  2X1K A;  2RDE A;  1RFE A;  4HMU A;  1NRG A;  3PFT A;  1Y30 A;  4HMW A;  4Z85 A;  2PTF A;  2D36 A;  2FUR A;  2R0X A;  3BPK A;  3K87 A;  3ZOG A;  3CP3 A;  2QCK A;  2I02 A;  2D37 A;  3A20 A;  3H96 A;  4Y9I A;  3R5Y A;  4YWN A;  3R5L A;  1W3O A;  1G76 A;  3U5W A;  3ZOE A;  2QEA A;  3ZOF A;  2D5M A;  4F07 A;  2IG6 A;  4N7R C;  3U0I A;  5CHO A;  1W9A A;  3NFW A;  3FGE A;  4R82 A;  2IML A;  1WLK A;  1I0S A;  4HMT A;  1USF A;  4HX6 A;  1T9M A;  3R5P A;  1WLI A;  1YLN A;  3DMB A;  3BA3 A;  3F7E A;  3HMZ A;  3B5M A;  2GJG A;  2NR4 A;  1I0R A;  3BNK A;  1G78 A;  1USC A;  1AXJ A;  5BNC A;  4L82 A;  1RZ1 A;  3KYF A;  2OL5 A;  2ARZ A;  3R5W A;  2AQ6 A;  3A6R A;  2D38 A;  3CB0 A;  4QVB A;  3IN6 A;  1EJE A;  3DB0 A;  4YBN A;  3ZOD A;  1CI0 A;  1DNL A;  2HQ7 A;  2X1J A;  3AMF A;  2HTD A;  5CHE C;  2HTI A;  3U35 A;  2ED4 A;  1FLM A;  3HY8 A;  2I51 A;  2FG9 A;  2ASF A;  4ZKY A;  3ZOC A;  2A2J A;  3AWH A;  1G77 A;  3R5Z A;  3A6Q A;  1XXO A;  1JNW A;  2Q9K A;  1WGB A;  2HQ9 A;  1YOA A;  3EC6 A;  3TGV A;  1VL7 A;  1W3P A;  1WV4 A;  3ZOH A;  4XHY A;  3K88 A;  4HMS A;  3R5R A;  2ECR A;  2FHQ A;  4HMX A;  3U34 A;  3VYA A;  2E83 A;  3VY5 A;  3VY2 A;  1RZ0 A;  3FKH A;  5ESC A;  3GAS A;  1W3Q A;  2ECU A;  1XHN A;  3K86 A;  2R6V A;  1G79 A;  3KYG A;  3RH7 A;  4IRA A;  5JAB A; 
#chains in the Genus database with same CATH topology
 3E4V A;  1TY9 A;  4XJ2 A;  2RE7 A;  3DNH A;  1W3R A;  2L1T A;  3SWJ A;  2K4Q A;  2OU5 A;  4HMV A;  2VPA A;  2IAB A;  2HHZ A;  2X1K A;  2RDE A;  1RFE A;  4HMU A;  1NRG A;  3PFT A;  1Y30 A;  4HMW A;  4Z85 A;  2PTF A;  2D36 A;  2FUR A;  2R0X A;  3BPK A;  3K87 A;  3ZOG A;  3CP3 A;  2QCK A;  2I02 A;  2D37 A;  3A20 A;  3H96 A;  4Y9I A;  3R5Y A;  4YWN A;  3R5L A;  1W3O A;  1G76 A;  3U5W A;  3ZOE A;  2QEA A;  3ZOF A;  2D5M A;  4F07 A;  2IG6 A;  4N7R C;  3V4H A;  3U0I A;  5CHO A;  1W9A A;  3NFW A;  3FGE A;  4R82 A;  2IML A;  4W64 A;  1WLK A;  1I0S A;  4HMT A;  4MTK A;  1USF A;  4HX6 A;  1T9M A;  3R5P A;  1WLI A;  1YLN A;  3DMB A;  2P5Z X;  3BA3 A;  3F7E A;  3HMZ A;  3B5M A;  2GJG A;  2NR4 A;  4TV4 A;  4HKH A;  1I0R A;  3BNK A;  1G78 A;  1USC A;  1AXJ A;  5BNC A;  1Y12 A;  4L82 A;  1RZ1 A;  3KYF A;  2OL5 A;  2ARZ A;  3R5W A;  2AQ6 A;  3A6R A;  2D38 A;  3CB0 A;  4QVB A;  3IN6 A;  1EJE A;  3DB0 A;  4YBN A;  3ZOD A;  1CI0 A;  1DNL A;  2HQ7 A;  2X1J A;  3AMF A;  2HTD A;  5CHE C;  2HTI A;  3U35 A;  2ED4 A;  1FLM A;  3HY8 A;  2I51 A;  2FG9 A;  2ASF A;  4ZKY A;  3ZOC A;  2A2J A;  3AWH A;  1G77 A;  3R5Z A;  3A6Q A;  2GUJ A;  1XXO A;  1JNW A;  2Q9K A;  1WGB A;  2HQ9 A;  1YOA A;  3EC6 A;  3TGV A;  3EAA A;  1VL7 A;  1W3P A;  1WV4 A;  4UHV A;  3ZOH A;  4XHY A;  3K88 A;  4HMS A;  3R5R A;  2ECR A;  2FHQ A;  4HMX A;  3U34 A;  3VYA A;  2E83 A;  3VY5 A;  3VY2 A;  1RZ0 A;  3FKH A;  5ESC A;  3GAS A;  1W3Q A;  2ECU A;  1XHN A;  3K86 A;  2R6V A;  3HE1 A;  1G79 A;  3KYG A;  3RH7 A;  4IRA A;  5JAB A; 
#chains in the Genus database with same CATH homology
 3E4V A;  1TY9 A;  4XJ2 A;  2RE7 A;  3DNH A;  1W3R A;  3SWJ A;  2OU5 A;  4HMV A;  2VPA A;  2IAB A;  2HHZ A;  2X1K A;  2RDE A;  1RFE A;  4HMU A;  1NRG A;  3PFT A;  1Y30 A;  4HMW A;  4Z85 A;  2PTF A;  2D36 A;  2FUR A;  2R0X A;  3BPK A;  3K87 A;  3ZOG A;  3CP3 A;  2QCK A;  2I02 A;  2D37 A;  3A20 A;  3H96 A;  4Y9I A;  3R5Y A;  4YWN A;  3R5L A;  1W3O A;  1G76 A;  3U5W A;  3ZOE A;  2QEA A;  3ZOF A;  2D5M A;  4F07 A;  2IG6 A;  4N7R C;  3U0I A;  5CHO A;  1W9A A;  3NFW A;  3FGE A;  4R82 A;  2IML A;  1WLK A;  1I0S A;  4HMT A;  1USF A;  4HX6 A;  1T9M A;  3R5P A;  1WLI A;  1YLN A;  3DMB A;  3BA3 A;  3F7E A;  3HMZ A;  3B5M A;  2GJG A;  2NR4 A;  1I0R A;  3BNK A;  1G78 A;  1USC A;  1AXJ A;  5BNC A;  4L82 A;  1RZ1 A;  3KYF A;  2OL5 A;  2ARZ A;  3R5W A;  2AQ6 A;  3A6R A;  2D38 A;  3CB0 A;  4QVB A;  3IN6 A;  1EJE A;  3DB0 A;  4YBN A;  3ZOD A;  1CI0 A;  1DNL A;  2HQ7 A;  2X1J A;  3AMF A;  2HTD A;  5CHE C;  2HTI A;  3U35 A;  2ED4 A;  1FLM A;  3HY8 A;  2I51 A;  2FG9 A;  2ASF A;  4ZKY A;  3ZOC A;  2A2J A;  3AWH A;  1G77 A;  3R5Z A;  3A6Q A;  1XXO A;  1JNW A;  2Q9K A;  1WGB A;  2HQ9 A;  1YOA A;  3EC6 A;  3TGV A;  1VL7 A;  1W3P A;  1WV4 A;  3ZOH A;  4XHY A;  3K88 A;  4HMS A;  3R5R A;  2ECR A;  2FHQ A;  4HMX A;  3U34 A;  3VYA A;  2E83 A;  3VY5 A;  3VY2 A;  1RZ0 A;  3FKH A;  5ESC A;  3GAS A;  1W3Q A;  2ECU A;  1XHN A;  3K86 A;  2R6V A;  1G79 A;  3KYG A;  3RH7 A;  4IRA A;  5JAB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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