3VYAA

W32y mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
120
structure length
120
Chain Sequence
PGTFFEVLKNEGVVAIATQGEDGPHLVNTYNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of W32Y mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
rcsb
molecule tags Electron transport
source organism Desulfovibrio vulgaris
molecule keywords FMN-binding protein
total genus 26
structure length 120
sequence length 120
ec nomenclature
pdb deposition date 2012-09-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3vyaA00
4N7RC 3KYFA 2ED4A 4HMWA 3HMZA 4HMSA 1W9AA 1RZ1A 1W3PA 2IG6A 4ZKYA 2QEAA 3AMFA 1G76A 3BA3A 2HHZA 2ECRA 3IN6A 1WLIA 3GASA 3FKHA 3ZODA 3R5WA 2D37A 2IMLA 3FGEA 2I02A 3PFTA 5ESCA 3U34A 4XJ2A 3R5RA 3ZOCA 3ZOGA 1I0RA 3U5WA 1XHNA 3ZOHA 1CI0A 3CP3A 3E4VA 3BPKA 5BNCA 2D36A 1USCA 1I0SA 2OU5A 3U0IA 1T9MA 2E83A 2FURA 2X1KA 3ZOEA 2HQ9A 2HTIA 2Q9KA 1WV4A 2AQ6A 4HMUA 5CHEC 1G77A 1Y30A 2R0XA 3K87A 1USFA 2NR4A 3VYAA 1RFEA 1XXOA 4YBNA 3HY8A 4IRAA 2HTDA 4F07A 1W3QA 3ZOFA 4R82A 4L82A 3DNHA 1WLKA 3KYGA 1RZ0A 3A6RA 4XHYA 3VY5A 2OL5A 2D38A 2FHQA 3R5LA 4Z85A 4YWNA 1G79A 5JABA 3K88A 2IABA 2A2JA 3TGVA 3B5MA 3K86A 3DMBA 4HX6A 4Y9IA 3R5YA 1VL7A 4HMXA 1G78A 2ARZA 2VPAA 3DB0A 3SWJA 3RH7A 1W3OA 1JNWA 3R5ZA 2GJGA 1AXJA 3AWHA 1FLMA 4HMVA 3CB0A 1W3RA 2ASFA 1EJEA 3EC6A 2ECUA 1TY9A 4HMTA 1NRGA 3BNKA 2QCKA 1YOAA 3U35A 3A20A 2RE7A 2HQ7A 5CHOA 2X1JA 3R5PA 3H96A 1WGBA 3F7EA 1DNLA 2R6VA 3VY2A 2D5MA 3A6QA 2I51A 4QVBA 2PTFA 3NFWA 2RDEA 2FG9A 1YLNA
chains in the Genus database with same CATH superfamily
4N7RC 3KYFA 2ED4A 4HMWA 3HMZA 4HMSA 1W9AA 1RZ1A 1W3PA 2IG6A 4ZKYA 2QEAA 3AMFA 4W64A 1G76A 3BA3A 2HHZA 2ECRA 3IN6A 2P5ZX 4UHVA 1WLIA 3GASA 3FKHA 3ZODA 3R5WA 2D37A 2IMLA 3FGEA 2I02A 3PFTA 5ESCA 3U34A 4XJ2A 3R5RA 3ZOCA 3ZOGA 3EAAA 1I0RA 3U5WA 1XHNA 3ZOHA 1CI0A 3CP3A 3E4VA 3BPKA 5BNCA 2D36A 1USCA 1I0SA 2OU5A 3U0IA 1T9MA 2E83A 2FURA 2X1KA 3ZOEA 2HQ9A 2HTIA 2Q9KA 1WV4A 2AQ6A 4HMUA 5CHEC 1G77A 1Y30A 2R0XA 3K87A 1USFA 2NR4A 3VYAA 1RFEA 1XXOA 4YBNA 3HY8A 4IRAA 2HTDA 4F07A 1W3QA 3ZOFA 4R82A 4L82A 3DNHA 1WLKA 3KYGA 1RZ0A 3A6RA 4XHYA 3VY5A 2OL5A 2D38A 2FHQA 3R5LA 4Z85A 4YWNA 1G79A 5JABA 3K88A 2IABA 2A2JA 3TGVA 3B5MA 3K86A 3DMBA 4HX6A 4TV4A 3R5YA 4Y9IA 1VL7A 4HMXA 1G78A 2ARZA 3HE1A 2VPAA 4HKHA 3DB0A 3SWJA 3RH7A 1W3OA 2K4QA 1JNWA 3R5ZA 2GJGA 1AXJA 3AWHA 1FLMA 4HMVA 3CB0A 1W3RA 2ASFA 1EJEA 3EC6A 2ECUA 1TY9A 4HMTA 2L1TA 1NRGA 3BNKA 1Y12A 2QCKA 1YOAA 3U35A 3A20A 4MTKA 2RE7A 2HQ7A 5CHOA 2X1JA 3R5PA 3H96A 1WGBA 3V4HA 3F7EA 1DNLA 2R6VA 3VY2A 2D5MA 3A6QA 2I51A 4QVBA 2PTFA 3NFWA 2GUJA 2RDEA 2FG9A 1YLNA
chains in the Genus database with same CATH topology
4N7RC 3KYFA 2ED4A 4HMWA 3HMZA 4HMSA 1W9AA 1RZ1A 1W3PA 2IG6A 4ZKYA 2QEAA 3AMFA 1G76A 3BA3A 2HHZA 2ECRA 3IN6A 1WLIA 3GASA 3FKHA 3ZODA 3R5WA 2D37A 2IMLA 3FGEA 2I02A 3PFTA 5ESCA 3U34A 4XJ2A 3R5RA 3ZOCA 3ZOGA 1I0RA 3U5WA 1XHNA 3ZOHA 1CI0A 3CP3A 3E4VA 3BPKA 5BNCA 2D36A 1USCA 1I0SA 2OU5A 3U0IA 1T9MA 2E83A 2FURA 2X1KA 3ZOEA 2HQ9A 2HTIA 2Q9KA 1WV4A 2AQ6A 4HMUA 5CHEC 1G77A 1Y30A 2R0XA 3K87A 1USFA 2NR4A 3VYAA 1RFEA 1XXOA 4YBNA 3HY8A 4IRAA 2HTDA 4F07A 1W3QA 3ZOFA 4R82A 4L82A 3DNHA 1WLKA 3KYGA 1RZ0A 3A6RA 4XHYA 3VY5A 2OL5A 2D38A 2FHQA 3R5LA 4Z85A 4YWNA 1G79A 5JABA 3K88A 2IABA 2A2JA 3TGVA 3B5MA 3K86A 3DMBA 4HX6A 4Y9IA 3R5YA 1VL7A 4HMXA 1G78A 2ARZA 2VPAA 3DB0A 3SWJA 3RH7A 1W3OA 1JNWA 3R5ZA 2GJGA 1AXJA 3AWHA 1FLMA 4HMVA 3CB0A 1W3RA 2ASFA 1EJEA 3EC6A 2ECUA 1TY9A 4HMTA 1NRGA 3BNKA 2QCKA 1YOAA 3U35A 3A20A 2RE7A 2HQ7A 5CHOA 2X1JA 3R5PA 3H96A 1WGBA 3F7EA 1DNLA 2R6VA 3VY2A 2D5MA 3A6QA 2I51A 4QVBA 2PTFA 3NFWA 2RDEA 2FG9A 1YLNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N7R C;  3KYF A;  2ED4 A;  4HMW A;  3HMZ A;  4HMS A;  1W9A A;  1RZ1 A;  1W3P A;  2IG6 A;  4ZKY A;  2QEA A;  3AMF A;  1G76 A;  3BA3 A;  2HHZ A;  2ECR A;  3IN6 A;  1WLI A;  3GAS A;  3FKH A;  3ZOD A;  3R5W A;  2D37 A;  2IML A;  3FGE A;  2I02 A;  3PFT A;  5ESC A;  3U34 A;  4XJ2 A;  3R5R A;  3ZOC A;  3ZOG A;  1I0R A;  3U5W A;  1XHN A;  3ZOH A;  1CI0 A;  3CP3 A;  3E4V A;  3BPK A;  5BNC A;  2D36 A;  1USC A;  1I0S A;  2OU5 A;  3U0I A;  1T9M A;  2E83 A;  2FUR A;  2X1K A;  3ZOE A;  2HQ9 A;  2HTI A;  2Q9K A;  1WV4 A;  2AQ6 A;  4HMU A;  5CHE C;  1G77 A;  1Y30 A;  2R0X A;  3K87 A;  1USF A;  2NR4 A;  3VYA A;  1RFE A;  1XXO A;  4YBN A;  3HY8 A;  4IRA A;  2HTD A;  4F07 A;  1W3Q A;  3ZOF A;  4R82 A;  4L82 A;  3DNH A;  1WLK A;  3KYG A;  1RZ0 A;  3A6R A;  4XHY A;  3VY5 A;  2OL5 A;  2D38 A;  2FHQ A;  3R5L A;  4Z85 A;  4YWN A;  1G79 A;  5JAB A;  3K88 A;  2IAB A;  2A2J A;  3TGV A;  3B5M A;  3K86 A;  3DMB A;  4HX6 A;  4Y9I A;  3R5Y A;  1VL7 A;  4HMX A;  1G78 A;  2ARZ A;  2VPA A;  3DB0 A;  3SWJ A;  3RH7 A;  1W3O A;  1JNW A;  3R5Z A;  2GJG A;  1AXJ A;  3AWH A;  1FLM A;  4HMV A;  3CB0 A;  1W3R A;  2ASF A;  1EJE A;  3EC6 A;  2ECU A;  1TY9 A;  4HMT A;  1NRG A;  3BNK A;  2QCK A;  1YOA A;  3U35 A;  3A20 A;  2RE7 A;  2HQ7 A;  5CHO A;  2X1J A;  3R5P A;  3H96 A;  1WGB A;  3F7E A;  1DNL A;  2R6V A;  3VY2 A;  2D5M A;  3A6Q A;  2I51 A;  4QVB A;  2PTF A;  3NFW A;  2RDE A;  2FG9 A;  1YLN A; 
#chains in the Genus database with same CATH topology
 4N7R C;  3KYF A;  2ED4 A;  4HMW A;  3HMZ A;  4HMS A;  1W9A A;  1RZ1 A;  1W3P A;  2IG6 A;  4ZKY A;  2QEA A;  3AMF A;  4W64 A;  1G76 A;  3BA3 A;  2HHZ A;  2ECR A;  3IN6 A;  2P5Z X;  4UHV A;  1WLI A;  3GAS A;  3FKH A;  3ZOD A;  3R5W A;  2D37 A;  2IML A;  3FGE A;  2I02 A;  3PFT A;  5ESC A;  3U34 A;  4XJ2 A;  3R5R A;  3ZOC A;  3ZOG A;  3EAA A;  1I0R A;  3U5W A;  1XHN A;  3ZOH A;  1CI0 A;  3CP3 A;  3E4V A;  3BPK A;  5BNC A;  2D36 A;  1USC A;  1I0S A;  2OU5 A;  3U0I A;  1T9M A;  2E83 A;  2FUR A;  2X1K A;  3ZOE A;  2HQ9 A;  2HTI A;  2Q9K A;  1WV4 A;  2AQ6 A;  4HMU A;  5CHE C;  1G77 A;  1Y30 A;  2R0X A;  3K87 A;  1USF A;  2NR4 A;  3VYA A;  1RFE A;  1XXO A;  4YBN A;  3HY8 A;  4IRA A;  2HTD A;  4F07 A;  1W3Q A;  3ZOF A;  4R82 A;  4L82 A;  3DNH A;  1WLK A;  3KYG A;  1RZ0 A;  3A6R A;  4XHY A;  3VY5 A;  2OL5 A;  2D38 A;  2FHQ A;  3R5L A;  4Z85 A;  4YWN A;  1G79 A;  5JAB A;  3K88 A;  2IAB A;  2A2J A;  3TGV A;  3B5M A;  3K86 A;  3DMB A;  4HX6 A;  4TV4 A;  3R5Y A;  4Y9I A;  1VL7 A;  4HMX A;  1G78 A;  2ARZ A;  3HE1 A;  2VPA A;  4HKH A;  3DB0 A;  3SWJ A;  3RH7 A;  1W3O A;  2K4Q A;  1JNW A;  3R5Z A;  2GJG A;  1AXJ A;  3AWH A;  1FLM A;  4HMV A;  3CB0 A;  1W3R A;  2ASF A;  1EJE A;  3EC6 A;  2ECU A;  1TY9 A;  4HMT A;  2L1T A;  1NRG A;  3BNK A;  1Y12 A;  2QCK A;  1YOA A;  3U35 A;  3A20 A;  4MTK A;  2RE7 A;  2HQ7 A;  5CHO A;  2X1J A;  3R5P A;  3H96 A;  1WGB A;  3V4H A;  3F7E A;  1DNL A;  2R6V A;  3VY2 A;  2D5M A;  3A6Q A;  2I51 A;  4QVB A;  2PTF A;  3NFW A;  2GUJ A;  2RDE A;  2FG9 A;  1YLN A; 
#chains in the Genus database with same CATH homology
 4N7R C;  3KYF A;  2ED4 A;  4HMW A;  3HMZ A;  4HMS A;  1W9A A;  1RZ1 A;  1W3P A;  2IG6 A;  4ZKY A;  2QEA A;  3AMF A;  1G76 A;  3BA3 A;  2HHZ A;  2ECR A;  3IN6 A;  1WLI A;  3GAS A;  3FKH A;  3ZOD A;  3R5W A;  2D37 A;  2IML A;  3FGE A;  2I02 A;  3PFT A;  5ESC A;  3U34 A;  4XJ2 A;  3R5R A;  3ZOC A;  3ZOG A;  1I0R A;  3U5W A;  1XHN A;  3ZOH A;  1CI0 A;  3CP3 A;  3E4V A;  3BPK A;  5BNC A;  2D36 A;  1USC A;  1I0S A;  2OU5 A;  3U0I A;  1T9M A;  2E83 A;  2FUR A;  2X1K A;  3ZOE A;  2HQ9 A;  2HTI A;  2Q9K A;  1WV4 A;  2AQ6 A;  4HMU A;  5CHE C;  1G77 A;  1Y30 A;  2R0X A;  3K87 A;  1USF A;  2NR4 A;  3VYA A;  1RFE A;  1XXO A;  4YBN A;  3HY8 A;  4IRA A;  2HTD A;  4F07 A;  1W3Q A;  3ZOF A;  4R82 A;  4L82 A;  3DNH A;  1WLK A;  3KYG A;  1RZ0 A;  3A6R A;  4XHY A;  3VY5 A;  2OL5 A;  2D38 A;  2FHQ A;  3R5L A;  4Z85 A;  4YWN A;  1G79 A;  5JAB A;  3K88 A;  2IAB A;  2A2J A;  3TGV A;  3B5M A;  3K86 A;  3DMB A;  4HX6 A;  4Y9I A;  3R5Y A;  1VL7 A;  4HMX A;  1G78 A;  2ARZ A;  2VPA A;  3DB0 A;  3SWJ A;  3RH7 A;  1W3O A;  1JNW A;  3R5Z A;  2GJG A;  1AXJ A;  3AWH A;  1FLM A;  4HMV A;  3CB0 A;  1W3R A;  2ASF A;  1EJE A;  3EC6 A;  2ECU A;  1TY9 A;  4HMT A;  1NRG A;  3BNK A;  2QCK A;  1YOA A;  3U35 A;  3A20 A;  2RE7 A;  2HQ7 A;  5CHO A;  2X1J A;  3R5P A;  3H96 A;  1WGB A;  3F7E A;  1DNL A;  2R6V A;  3VY2 A;  2D5M A;  3A6Q A;  2I51 A;  4QVB A;  2PTF A;  3NFW A;  2RDE A;  2FG9 A;  1YLN A; 
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similar chains in the pdb database (?% sequence similarity)

 
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