1T9MA

X-ray crystal structure of phzg from pseudomonas aeruginosa
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
204
structure length
204
Chain Sequence
LTGTIEAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQSETLADIHALRAEARRLAETDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDRDEGGWKHRYLQP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the phenazine biosynthesis enzyme PhzG.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Pseudomonas aeruginosa
molecule keywords probable pyridoxamine 5'-phosphate oxidase
total genus 50
structure length 204
sequence length 204
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-05-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1t9mA00
2IMLA 3H96A 1TY9A 2E83A 1RZ1A 1XHNA 2I51A 3R5YA 3R5ZA 3BNKA 2FHQA 2R6VA 3F7EA 4HMUA 4YWNA 3BPKA 2Q9KA 3VYAA 2QCKA 4HMSA 4QVBA 1I0RA 4Z85A 1USFA 2HTDA 2PTFA 1T9MA 1USCA 3A6QA 2IABA 2QEAA 1W3OA 3E4VA 3DMBA 3VY5A 2D37A 3FGEA 3R5PA 4L82A 3CB0A 3NFWA 1YLNA 2ASFA 1JNWA 1W9AA 1XXOA 3BA3A 2R0XA 2I02A 3AWHA 1G76A 1G77A 4HMXA 3ZOGA 2AQ6A 4HMWA 4Y9IA 3ZOEA 2ECUA 3K87A 3HMZA 1G78A 4N7RC 2HHZA 2X1KA 2NR4A 1G79A 5JABA 4HMTA 5CHEC 2HQ9A 2ED4A 4XJ2A 2ARZA 2D5MA 2ECRA 3KYFA 1W3QA 3PFTA 3TGVA 3K86A 5CHOA 1WGBA 2HTIA 1W3PA 2VPAA 3R5WA 2GJGA 1EJEA 3U5WA 4ZKYA 2A2JA 2RDEA 3K88A 1RFEA 5BNCA 3ZOFA 3AMFA 1Y30A 4XHYA 2RE7A 1WLIA 3KYGA 2IG6A 3RH7A 3ZOHA 2OL5A 3U35A 3CP3A 3IN6A 4HMVA 4HX6A 3EC6A 1CI0A 1VL7A 2D38A 4YBNA 3B5MA 4R82A 1RZ0A 3FKHA 3A20A 3ZODA 3DB0A 3U0IA 1I0SA 1NRGA 1W3RA 3DNHA 2D36A 3VY2A 3ZOCA 3HY8A 3GASA 3A6RA 2X1JA 1WV4A 2OU5A 3R5RA 1YOAA 1DNLA 4IRAA 5ESCA 1FLMA 2FG9A 3U34A 3R5LA 2FURA 3SWJA 1AXJA 2HQ7A 1WLKA 4F07A
chains in the Genus database with same CATH superfamily
2IMLA 3H96A 4MTKA 2K4QA 1TY9A 2E83A 1RZ1A 1XHNA 2I51A 3R5YA 3R5ZA 3BNKA 2FHQA 2R6VA 3F7EA 4HMUA 4YWNA 3BPKA 2Q9KA 3VYAA 2QCKA 4HMSA 4QVBA 1I0RA 4Z85A 1USFA 2HTDA 2PTFA 1T9MA 1USCA 3A6QA 2IABA 2QEAA 1W3OA 3E4VA 3DMBA 3VY5A 2D37A 3FGEA 3R5PA 4L82A 4W64A 3CB0A 3NFWA 1YLNA 2ASFA 1JNWA 3HE1A 1W9AA 1XXOA 3BA3A 2R0XA 2I02A 3AWHA 1G76A 1G77A 4HMXA 3ZOGA 2AQ6A 4HMWA 4Y9IA 3ZOEA 2ECUA 3K87A 3HMZA 4HKHA 1G78A 4N7RC 2HHZA 3EAAA 2X1KA 2NR4A 1G79A 5JABA 1Y12A 4HMTA 2L1TA 5CHEC 2HQ9A 2ED4A 4XJ2A 2ARZA 2D5MA 2ECRA 3KYFA 1W3QA 3PFTA 3TGVA 3K86A 5CHOA 1WGBA 2HTIA 1W3PA 2VPAA 3R5WA 2GJGA 1EJEA 3U5WA 4ZKYA 2A2JA 2RDEA 3K88A 2P5ZX 1RFEA 5BNCA 3ZOFA 3AMFA 1Y30A 4XHYA 2RE7A 1WLIA 3KYGA 2IG6A 3RH7A 3ZOHA 2OL5A 4TV4A 3CP3A 3IN6A 3U35A 4HMVA 4HX6A 3EC6A 1CI0A 1VL7A 2D38A 4YBNA 3B5MA 4R82A 1RZ0A 3FKHA 3A20A 3ZODA 3DB0A 3U0IA 1I0SA 1NRGA 1W3RA 3DNHA 2D36A 3VY2A 3V4HA 3ZOCA 3HY8A 3GASA 3A6RA 2X1JA 1WV4A 2OU5A 3R5RA 2GUJA 1YOAA 1DNLA 4IRAA 5ESCA 1FLMA 2FG9A 3U34A 3R5LA 2FURA 3SWJA 1AXJA 2HQ7A 4UHVA 1WLKA 4F07A
chains in the Genus database with same CATH topology
2IMLA 3H96A 1TY9A 2E83A 1RZ1A 1XHNA 2I51A 3R5YA 3R5ZA 3BNKA 2FHQA 2R6VA 3F7EA 4HMUA 4YWNA 3BPKA 2Q9KA 3VYAA 2QCKA 4HMSA 4QVBA 1I0RA 4Z85A 1USFA 2HTDA 2PTFA 1T9MA 1USCA 3A6QA 2IABA 2QEAA 1W3OA 3E4VA 3DMBA 3VY5A 2D37A 3FGEA 3R5PA 4L82A 3CB0A 3NFWA 1YLNA 2ASFA 1JNWA 1W9AA 1XXOA 3BA3A 2R0XA 2I02A 3AWHA 1G76A 1G77A 4HMXA 3ZOGA 2AQ6A 4HMWA 4Y9IA 3ZOEA 2ECUA 3K87A 3HMZA 1G78A 4N7RC 2HHZA 2X1KA 2NR4A 1G79A 5JABA 4HMTA 5CHEC 2HQ9A 2ED4A 4XJ2A 2ARZA 2D5MA 2ECRA 3KYFA 1W3QA 3PFTA 3TGVA 3K86A 5CHOA 1WGBA 2HTIA 1W3PA 2VPAA 3R5WA 2GJGA 1EJEA 3U5WA 4ZKYA 2A2JA 2RDEA 3K88A 1RFEA 5BNCA 3ZOFA 3AMFA 1Y30A 4XHYA 2RE7A 1WLIA 3KYGA 2IG6A 3RH7A 3ZOHA 2OL5A 3U35A 3CP3A 3IN6A 4HMVA 4HX6A 3EC6A 1CI0A 1VL7A 2D38A 4YBNA 3B5MA 4R82A 1RZ0A 3FKHA 3A20A 3ZODA 3DB0A 3U0IA 1I0SA 1NRGA 1W3RA 3DNHA 2D36A 3VY2A 3ZOCA 3HY8A 3GASA 3A6RA 2X1JA 1WV4A 2OU5A 3R5RA 1YOAA 1DNLA 4IRAA 5ESCA 1FLMA 2FG9A 3U34A 3R5LA 2FURA 3SWJA 1AXJA 2HQ7A 1WLKA 4F07A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IML A;  3H96 A;  1TY9 A;  2E83 A;  1RZ1 A;  1XHN A;  2I51 A;  3R5Y A;  3R5Z A;  3BNK A;  2FHQ A;  2R6V A;  3F7E A;  4HMU A;  4YWN A;  3BPK A;  2Q9K A;  3VYA A;  2QCK A;  4HMS A;  4QVB A;  1I0R A;  4Z85 A;  1USF A;  2HTD A;  2PTF A;  1T9M A;  1USC A;  3A6Q A;  2IAB A;  2QEA A;  1W3O A;  3E4V A;  3DMB A;  3VY5 A;  2D37 A;  3FGE A;  3R5P A;  4L82 A;  3CB0 A;  3NFW A;  1YLN A;  2ASF A;  1JNW A;  1W9A A;  1XXO A;  3BA3 A;  2R0X A;  2I02 A;  3AWH A;  1G76 A;  1G77 A;  4HMX A;  3ZOG A;  2AQ6 A;  4HMW A;  4Y9I A;  3ZOE A;  2ECU A;  3K87 A;  3HMZ A;  1G78 A;  4N7R C;  2HHZ A;  2X1K A;  2NR4 A;  1G79 A;  5JAB A;  4HMT A;  5CHE C;  2HQ9 A;  2ED4 A;  4XJ2 A;  2ARZ A;  2D5M A;  2ECR A;  3KYF A;  1W3Q A;  3PFT A;  3TGV A;  3K86 A;  5CHO A;  1WGB A;  2HTI A;  1W3P A;  2VPA A;  3R5W A;  2GJG A;  1EJE A;  3U5W A;  4ZKY A;  2A2J A;  2RDE A;  3K88 A;  1RFE A;  5BNC A;  3ZOF A;  3AMF A;  1Y30 A;  4XHY A;  2RE7 A;  1WLI A;  3KYG A;  2IG6 A;  3RH7 A;  3ZOH A;  2OL5 A;  3U35 A;  3CP3 A;  3IN6 A;  4HMV A;  4HX6 A;  3EC6 A;  1CI0 A;  1VL7 A;  2D38 A;  4YBN A;  3B5M A;  4R82 A;  1RZ0 A;  3FKH A;  3A20 A;  3ZOD A;  3DB0 A;  3U0I A;  1I0S A;  1NRG A;  1W3R A;  3DNH A;  2D36 A;  3VY2 A;  3ZOC A;  3HY8 A;  3GAS A;  3A6R A;  2X1J A;  1WV4 A;  2OU5 A;  3R5R A;  1YOA A;  1DNL A;  4IRA A;  5ESC A;  1FLM A;  2FG9 A;  3U34 A;  3R5L A;  2FUR A;  3SWJ A;  1AXJ A;  2HQ7 A;  1WLK A;  4F07 A; 
#chains in the Genus database with same CATH topology
 2IML A;  3H96 A;  4MTK A;  2K4Q A;  1TY9 A;  2E83 A;  1RZ1 A;  1XHN A;  2I51 A;  3R5Y A;  3R5Z A;  3BNK A;  2FHQ A;  2R6V A;  3F7E A;  4HMU A;  4YWN A;  3BPK A;  2Q9K A;  3VYA A;  2QCK A;  4HMS A;  4QVB A;  1I0R A;  4Z85 A;  1USF A;  2HTD A;  2PTF A;  1T9M A;  1USC A;  3A6Q A;  2IAB A;  2QEA A;  1W3O A;  3E4V A;  3DMB A;  3VY5 A;  2D37 A;  3FGE A;  3R5P A;  4L82 A;  4W64 A;  3CB0 A;  3NFW A;  1YLN A;  2ASF A;  1JNW A;  3HE1 A;  1W9A A;  1XXO A;  3BA3 A;  2R0X A;  2I02 A;  3AWH A;  1G76 A;  1G77 A;  4HMX A;  3ZOG A;  2AQ6 A;  4HMW A;  4Y9I A;  3ZOE A;  2ECU A;  3K87 A;  3HMZ A;  4HKH A;  1G78 A;  4N7R C;  2HHZ A;  3EAA A;  2X1K A;  2NR4 A;  1G79 A;  5JAB A;  1Y12 A;  4HMT A;  2L1T A;  5CHE C;  2HQ9 A;  2ED4 A;  4XJ2 A;  2ARZ A;  2D5M A;  2ECR A;  3KYF A;  1W3Q A;  3PFT A;  3TGV A;  3K86 A;  5CHO A;  1WGB A;  2HTI A;  1W3P A;  2VPA A;  3R5W A;  2GJG A;  1EJE A;  3U5W A;  4ZKY A;  2A2J A;  2RDE A;  3K88 A;  2P5Z X;  1RFE A;  5BNC A;  3ZOF A;  3AMF A;  1Y30 A;  4XHY A;  2RE7 A;  1WLI A;  3KYG A;  2IG6 A;  3RH7 A;  3ZOH A;  2OL5 A;  4TV4 A;  3CP3 A;  3IN6 A;  3U35 A;  4HMV A;  4HX6 A;  3EC6 A;  1CI0 A;  1VL7 A;  2D38 A;  4YBN A;  3B5M A;  4R82 A;  1RZ0 A;  3FKH A;  3A20 A;  3ZOD A;  3DB0 A;  3U0I A;  1I0S A;  1NRG A;  1W3R A;  3DNH A;  2D36 A;  3VY2 A;  3V4H A;  3ZOC A;  3HY8 A;  3GAS A;  3A6R A;  2X1J A;  1WV4 A;  2OU5 A;  3R5R A;  2GUJ A;  1YOA A;  1DNL A;  4IRA A;  5ESC A;  1FLM A;  2FG9 A;  3U34 A;  3R5L A;  2FUR A;  3SWJ A;  1AXJ A;  2HQ7 A;  4UHV A;  1WLK A;  4F07 A; 
#chains in the Genus database with same CATH homology
 2IML A;  3H96 A;  1TY9 A;  2E83 A;  1RZ1 A;  1XHN A;  2I51 A;  3R5Y A;  3R5Z A;  3BNK A;  2FHQ A;  2R6V A;  3F7E A;  4HMU A;  4YWN A;  3BPK A;  2Q9K A;  3VYA A;  2QCK A;  4HMS A;  4QVB A;  1I0R A;  4Z85 A;  1USF A;  2HTD A;  2PTF A;  1T9M A;  1USC A;  3A6Q A;  2IAB A;  2QEA A;  1W3O A;  3E4V A;  3DMB A;  3VY5 A;  2D37 A;  3FGE A;  3R5P A;  4L82 A;  3CB0 A;  3NFW A;  1YLN A;  2ASF A;  1JNW A;  1W9A A;  1XXO A;  3BA3 A;  2R0X A;  2I02 A;  3AWH A;  1G76 A;  1G77 A;  4HMX A;  3ZOG A;  2AQ6 A;  4HMW A;  4Y9I A;  3ZOE A;  2ECU A;  3K87 A;  3HMZ A;  1G78 A;  4N7R C;  2HHZ A;  2X1K A;  2NR4 A;  1G79 A;  5JAB A;  4HMT A;  5CHE C;  2HQ9 A;  2ED4 A;  4XJ2 A;  2ARZ A;  2D5M A;  2ECR A;  3KYF A;  1W3Q A;  3PFT A;  3TGV A;  3K86 A;  5CHO A;  1WGB A;  2HTI A;  1W3P A;  2VPA A;  3R5W A;  2GJG A;  1EJE A;  3U5W A;  4ZKY A;  2A2J A;  2RDE A;  3K88 A;  1RFE A;  5BNC A;  3ZOF A;  3AMF A;  1Y30 A;  4XHY A;  2RE7 A;  1WLI A;  3KYG A;  2IG6 A;  3RH7 A;  3ZOH A;  2OL5 A;  3U35 A;  3CP3 A;  3IN6 A;  4HMV A;  4HX6 A;  3EC6 A;  1CI0 A;  1VL7 A;  2D38 A;  4YBN A;  3B5M A;  4R82 A;  1RZ0 A;  3FKH A;  3A20 A;  3ZOD A;  3DB0 A;  3U0I A;  1I0S A;  1NRG A;  1W3R A;  3DNH A;  2D36 A;  3VY2 A;  3ZOC A;  3HY8 A;  3GAS A;  3A6R A;  2X1J A;  1WV4 A;  2OU5 A;  3R5R A;  1YOA A;  1DNL A;  4IRA A;  5ESC A;  1FLM A;  2FG9 A;  3U34 A;  3R5L A;  2FUR A;  3SWJ A;  1AXJ A;  2HQ7 A;  1WLK A;  4F07 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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