1Y12A

Structure of a hemolysin-coregulated protein from pseudomonas aeruginosa
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
161
structure length
160
Chain Sequence
AVDMFIKIGDVKGESKDKTHAEEIDVLAWSWGMSQSGSMHMGGGGAGKVNVQDLSFTKYIDKSTPNLMMACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNVQA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus.
pubmed doi rcsb
molecule tags Structural genomics, unknown function
source organism Pseudomonas aeruginosa pao1
molecule keywords hypothetical protein PA0085
total genus 30
structure length 160
sequence length 161
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2004-11-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05638 T6SS_HCP Type VI secretion system effector, Hcp
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.20 Mainly Beta Roll Pnp Oxidase; Chain A Hcp1-like 1y12A00
3HE1A 1Y12A 4W64A 3EAAA 4TV4A 4HKHA 3V4HA
chains in the Genus database with same CATH superfamily
3EAAA 2GJGA 2D37A 4TV4A 4HKHA 3VY5A 3HY8A 3KYGA 3K86A 3FKHA 2P5ZX 1WLIA 3BA3A 4IRAA 2FHQA 1CI0A 3NFWA 1W9AA 1I0SA 1NRGA 3HMZA 3R5PA 2ARZA 3SWJA 4MTKA 1USCA 4HMXA 1VL7A 3A6RA 4YBNA 2RE7A 2HTIA 2NR4A 3K87A 1YOAA 3PFTA 2ECRA 5BNCA 3F7EA 3VYAA 2HQ9A 4Y9IA 3ZOFA 1WLKA 3ZOCA 3HE1A 1Y12A 3GASA 2AQ6A 2A2JA 1G77A 4HMWA 1I0RA 2VPAA 3K88A 1JNWA 3EC6A 4Z85A 4XHYA 2L1TA 3BPKA 2PTFA 4QVBA 1RZ0A 2D5MA 1W3RA 2X1JA 3TGVA 3ZOGA 4W64A 2ASFA 3R5YA 4YWNA 2X1KA 3U5WA 3U0IA 3R5ZA 3IN6A 2IG6A 2OU5A 2D38A 1T9MA 4N7RC 1G78A 1XHNA 1TY9A 3AMFA 3ZOHA 2R0XA 3U35A 4F07A 3ZOEA 4HX6A 2IABA 5CHOA 3B5MA 3CB0A 2ECUA 3V4HA 3U34A 1W3QA 2E83A 2Q9KA 3DB0A 1G79A 1DNLA 2R6VA 3ZODA 4UHVA 2FG9A 1RFEA 1EJEA 3BNKA 3R5WA 2HTDA 2I51A 2QEAA 3VY2A 5ESCA 1G76A 3CP3A 5CHEC 2HHZA 1XXOA 4ZKYA 5JABA 1RZ1A 1FLMA 1WGBA 4L82A 1W3PA 4HMSA 3DMBA 3AWHA 1USFA 2ED4A 3R5LA 4R82A 3RH7A 1YLNA 2GUJA 3FGEA 2RDEA 2FURA 3A20A 4HMTA 3H96A 3E4VA 2HQ7A 3A6QA 2QCKA 2IMLA 2OL5A 1WV4A 4XJ2A 1AXJA 4HMUA 4HMVA 3KYFA 2I02A 2K4QA 1W3OA 2D36A 1Y30A 3R5RA 3DNHA
chains in the Genus database with same CATH topology
3HE1A 1Y12A 4W64A 3EAAA 4TV4A 4HKHA 3V4HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HE1 A;  1Y12 A;  4W64 A;  3EAA A;  4TV4 A;  4HKH A;  3V4H A; 
#chains in the Genus database with same CATH topology
 3EAA A;  2GJG A;  2D37 A;  4TV4 A;  4HKH A;  3VY5 A;  3HY8 A;  3KYG A;  3K86 A;  3FKH A;  2P5Z X;  1WLI A;  3BA3 A;  4IRA A;  2FHQ A;  1CI0 A;  3NFW A;  1W9A A;  1I0S A;  1NRG A;  3HMZ A;  3R5P A;  2ARZ A;  3SWJ A;  4MTK A;  1USC A;  4HMX A;  1VL7 A;  3A6R A;  4YBN A;  2RE7 A;  2HTI A;  2NR4 A;  3K87 A;  1YOA A;  3PFT A;  2ECR A;  5BNC A;  3F7E A;  3VYA A;  2HQ9 A;  4Y9I A;  3ZOF A;  1WLK A;  3ZOC A;  3HE1 A;  1Y12 A;  3GAS A;  2AQ6 A;  2A2J A;  1G77 A;  4HMW A;  1I0R A;  2VPA A;  3K88 A;  1JNW A;  3EC6 A;  4Z85 A;  4XHY A;  2L1T A;  3BPK A;  2PTF A;  4QVB A;  1RZ0 A;  2D5M A;  1W3R A;  2X1J A;  3TGV A;  3ZOG A;  4W64 A;  2ASF A;  3R5Y A;  4YWN A;  2X1K A;  3U5W A;  3U0I A;  3R5Z A;  3IN6 A;  2IG6 A;  2OU5 A;  2D38 A;  1T9M A;  4N7R C;  1G78 A;  1XHN A;  1TY9 A;  3AMF A;  3ZOH A;  2R0X A;  3U35 A;  4F07 A;  3ZOE A;  4HX6 A;  2IAB A;  5CHO A;  3B5M A;  3CB0 A;  2ECU A;  3V4H A;  3U34 A;  1W3Q A;  2E83 A;  2Q9K A;  3DB0 A;  1G79 A;  1DNL A;  2R6V A;  3ZOD A;  4UHV A;  2FG9 A;  1RFE A;  1EJE A;  3BNK A;  3R5W A;  2HTD A;  2I51 A;  2QEA A;  3VY2 A;  5ESC A;  1G76 A;  3CP3 A;  5CHE C;  2HHZ A;  1XXO A;  4ZKY A;  5JAB A;  1RZ1 A;  1FLM A;  1WGB A;  4L82 A;  1W3P A;  4HMS A;  3DMB A;  3AWH A;  1USF A;  2ED4 A;  3R5L A;  4R82 A;  3RH7 A;  1YLN A;  2GUJ A;  3FGE A;  2RDE A;  2FUR A;  3A20 A;  4HMT A;  3H96 A;  3E4V A;  2HQ7 A;  3A6Q A;  2QCK A;  2IML A;  2OL5 A;  1WV4 A;  4XJ2 A;  1AXJ A;  4HMU A;  4HMV A;  3KYF A;  2I02 A;  2K4Q A;  1W3O A;  2D36 A;  1Y30 A;  3R5R A;  3DNH A; 
#chains in the Genus database with same CATH homology
 3HE1 A;  1Y12 A;  4W64 A;  3EAA A;  4TV4 A;  4HKH A;  3V4H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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