4N7RC

Crystal structure of arabidopsis glutamyl-trna reductase in complex with its binding protein
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
252
structure length
252
Chain Sequence
STHKPFPAEVSRSIMELSSVGTLSTLTHDGWPLGVGVRFAVDKDGTPVLCLNRSVSPDKRSALHVQLEQCGLRTPQCTIQGSIGRPGDDTVLKRLSATWREKFGEEVKEDSLYVVAVDRVLQMEDFMEDGIWVASSDYKNASPDPLRDIAEDIVNQINANNMEDIFRFCNVYVDLDFVVSETKMIWMDRLGFDLRVWSPRGVYDVRIPFPMEVTDEKGAKSSFNGMSQLAWEVEKSYCPADFNKVKLLKQVV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Arabidopsis glutamyl-tRNA reductase in complex with its stimulator protein
pubmed doi rcsb
molecule tags Oxidoreductase/protein binding
source organism Arabidopsis thaliana
molecule keywords Glutamyl-tRNA reductase 1, chloroplastic
total genus 63
structure length 252
sequence length 252
chains with identical sequence D
ec nomenclature
pdb deposition date 2013-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF10615 DUF2470 Protein of unknown function (DUF2470)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 4n7rC01
3.20.180.10 Alpha Beta Alpha-Beta Barrel Split barrel-like PNP-oxidase-like 4n7rC02
4YBNA 3AMFA 3CB0A 3R5ZA 2ARZA 1WLKA 2IG6A 5BNCA 4F07A 2GJGA 2D38A 4HMXA 1W9AA 2D5MA 1G79A 3E4VA 2HTDA 1YLNA 3IN6A 2HQ9A 3BPKA 2R0XA 3R5PA 3BA3A 2OU5A 1RFEA 1G78A 2HQ7A 2X1KA 4N7RC 2I51A 2I02A 3FKHA 3NFWA 1AXJA 3R5YA 4HMVA 3VYAA 1W3QA 4HMTA 3BNKA 1W3PA 3HY8A 2OL5A 1WLIA 3HMZA 3U0IA 4IRAA 2A2JA 2X1JA 4XJ2A 3ZOHA 1YOAA 3B5MA 3VY2A 4XHYA 5ESCA 3EC6A 1XXOA 1USFA 4Y9IA 2D36A 2IABA 3KYFA 2ED4A 3A20A 2E83A 1EJEA 3A6QA 2ECUA 2IMLA 3DB0A 1WGBA 2FG9A 4HMSA 4ZKYA 1DNLA 3GASA 1RZ1A 3K86A 3TGVA 2R6VA 3PFTA 2D37A 3ZOEA 2FURA 3CP3A 1JNWA 1W3RA 4HMWA 4Z85A 1TY9A 2FHQA 3H96A 2VPAA 4L82A 2QEAA 4YWNA 2ASFA 5JABA 1G77A 3A6RA 3DNHA 2Q9KA 2AQ6A 3ZODA 3U35A 1XHNA 3U5WA 1I0RA 4HMUA 2ECRA 3ZOFA 1CI0A 3U34A 1NRGA 3FGEA 5CHOA 2HTIA 3F7EA 1RZ0A 3ZOGA 2HHZA 1T9MA 3KYGA 3K88A 4HX6A 1VL7A 2RE7A 5CHEC 1W3OA 3ZOCA 1USCA 4QVBA 3R5RA 3VY5A 1I0SA 1WV4A 3DMBA 1FLMA 1G76A 3AWHA 2QCKA 3R5LA 3RH7A 3SWJA 3K87A 3R5WA 2NR4A 4R82A 2PTFA 2RDEA 1Y30A
chains in the Genus database with same CATH superfamily
4YBNA 3AMFA 3HE1A 3CB0A 3R5ZA 2ARZA 1WLKA 2IG6A 3EAAA 4F07A 5BNCA 2GJGA 2K4QA 2D38A 4HMXA 1W9AA 2D5MA 1G79A 3E4VA 2HTDA 1YLNA 3IN6A 2HQ9A 3VKHA 3BPKA 2R0XA 3VKGA 3R5PA 3BA3A 2OU5A 1RFEA 1G78A 2HQ7A 2X1KA 4N7RC 2I51A 2I02A 3FKHA 3NFWA 1AXJA 4AKIA 3R5YA 4HMVA 4HKHA 3VYAA 1W3QA 4HMTA 4TV4A 3BNKA 1W3PA 3HY8A 1Y12A 2OL5A 1WLIA 3HMZA 3V4HA 3U0IA 4IRAA 2A2JA 2L1TA 2X1JA 4XJ2A 1YOAA 3B5MA 3ZOHA 3VY2A 4XHYA 5ESCA 3EC6A 1XXOA 1USFA 4Y9IA 2D36A 4W64A 2IABA 3KYFA 2ED4A 3A20A 2E83A 1EJEA 3A6QA 2ECUA 4UHVA 2IMLA 3DB0A 1WGBA 2FG9A 4HMSA 4ZKYA 1DNLA 4AI6A 3GASA 1RZ1A 3K86A 3TGVA 2R6VA 3PFTA 2D37A 3ZOEA 2FURA 3CP3A 1JNWA 1W3RA 4HMWA 4Z85A 1TY9A 2FHQA 3H96A 2VPAA 4L82A 2QEAA 4AKGA 4YWNA 2ASFA 5JABA 4MTKA 1G77A 3A6RA 3DNHA 4AKHA 2P5ZX 2Q9KA 2AQ6A 3ZODA 3U35A 1XHNA 3U5WA 1I0RA 4HMUA 2ECRA 3ZOFA 1CI0A 3U34A 1NRGA 3FGEA 5CHOA 2HTIA 3F7EA 1RZ0A 3ZOGA 2HHZA 1T9MA 3KYGA 3K88A 4HX6A 1VL7A 2RE7A 5CHEC 1W3OA 3ZOCA 1USCA 4QVBA 3R5RA 3VY5A 1I0SA 1WV4A 2GUJA 3DMBA 1FLMA 1G76A 3AWHA 2QCKA 3R5LA 3RH7A 3SWJA 3K87A 3R5WA 2NR4A 4R82A 2PTFA 2RDEA 1Y30A
chains in the Genus database with same CATH topology
4YBNA 3AMFA 3CB0A 3R5ZA 2ARZA 1WLKA 2IG6A 5BNCA 4F07A 2GJGA 2D38A 4HMXA 1W9AA 2D5MA 1G79A 3E4VA 2HTDA 1YLNA 3IN6A 2HQ9A 3BPKA 2R0XA 3R5PA 3BA3A 2OU5A 1RFEA 1G78A 2HQ7A 2X1KA 4N7RC 2I51A 2I02A 3FKHA 3NFWA 1AXJA 3R5YA 4HMVA 3VYAA 1W3QA 4HMTA 3BNKA 1W3PA 3HY8A 2OL5A 1WLIA 3HMZA 3U0IA 4IRAA 2A2JA 2X1JA 4XJ2A 3ZOHA 1YOAA 3B5MA 3VY2A 4XHYA 5ESCA 3EC6A 1XXOA 1USFA 4Y9IA 2D36A 2IABA 3KYFA 2ED4A 3A20A 2E83A 1EJEA 3A6QA 2ECUA 2IMLA 3DB0A 1WGBA 2FG9A 4HMSA 4ZKYA 1DNLA 3GASA 1RZ1A 3K86A 3TGVA 2R6VA 3PFTA 2D37A 3ZOEA 2FURA 3CP3A 1JNWA 1W3RA 4HMWA 4Z85A 1TY9A 2FHQA 3H96A 2VPAA 4L82A 2QEAA 4YWNA 2ASFA 5JABA 1G77A 3A6RA 3DNHA 2Q9KA 2AQ6A 3ZODA 3U35A 1XHNA 3U5WA 1I0RA 4HMUA 2ECRA 3ZOFA 1CI0A 3U34A 1NRGA 3FGEA 5CHOA 2HTIA 3F7EA 1RZ0A 3ZOGA 2HHZA 1T9MA 3KYGA 3K88A 4HX6A 1VL7A 2RE7A 5CHEC 1W3OA 3ZOCA 1USCA 4QVBA 3R5RA 3VY5A 1I0SA 1WV4A 3DMBA 1FLMA 1G76A 3AWHA 2QCKA 3R5LA 3RH7A 3SWJA 3K87A 3R5WA 2NR4A 4R82A 2PTFA 2RDEA 1Y30A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YBN A;  3AMF A;  3CB0 A;  3R5Z A;  2ARZ A;  1WLK A;  2IG6 A;  5BNC A;  4F07 A;  2GJG A;  2D38 A;  4HMX A;  1W9A A;  2D5M A;  1G79 A;  3E4V A;  2HTD A;  1YLN A;  3IN6 A;  2HQ9 A;  3BPK A;  2R0X A;  3R5P A;  3BA3 A;  2OU5 A;  1RFE A;  1G78 A;  2HQ7 A;  2X1K A;  4N7R C;  2I51 A;  2I02 A;  3FKH A;  3NFW A;  1AXJ A;  3R5Y A;  4HMV A;  3VYA A;  1W3Q A;  4HMT A;  3BNK A;  1W3P A;  3HY8 A;  2OL5 A;  1WLI A;  3HMZ A;  3U0I A;  4IRA A;  2A2J A;  2X1J A;  4XJ2 A;  3ZOH A;  1YOA A;  3B5M A;  3VY2 A;  4XHY A;  5ESC A;  3EC6 A;  1XXO A;  1USF A;  4Y9I A;  2D36 A;  2IAB A;  3KYF A;  2ED4 A;  3A20 A;  2E83 A;  1EJE A;  3A6Q A;  2ECU A;  2IML A;  3DB0 A;  1WGB A;  2FG9 A;  4HMS A;  4ZKY A;  1DNL A;  3GAS A;  1RZ1 A;  3K86 A;  3TGV A;  2R6V A;  3PFT A;  2D37 A;  3ZOE A;  2FUR A;  3CP3 A;  1JNW A;  1W3R A;  4HMW A;  4Z85 A;  1TY9 A;  2FHQ A;  3H96 A;  2VPA A;  4L82 A;  2QEA A;  4YWN A;  2ASF A;  5JAB A;  1G77 A;  3A6R A;  3DNH A;  2Q9K A;  2AQ6 A;  3ZOD A;  3U35 A;  1XHN A;  3U5W A;  1I0R A;  4HMU A;  2ECR A;  3ZOF A;  1CI0 A;  3U34 A;  1NRG A;  3FGE A;  5CHO A;  2HTI A;  3F7E A;  1RZ0 A;  3ZOG A;  2HHZ A;  1T9M A;  3KYG A;  3K88 A;  4HX6 A;  1VL7 A;  2RE7 A;  5CHE C;  1W3O A;  3ZOC A;  1USC A;  4QVB A;  3R5R A;  3VY5 A;  1I0S A;  1WV4 A;  3DMB A;  1FLM A;  1G76 A;  3AWH A;  2QCK A;  3R5L A;  3RH7 A;  3SWJ A;  3K87 A;  3R5W A;  2NR4 A;  4R82 A;  2PTF A;  2RDE A;  1Y30 A; 
#chains in the Genus database with same CATH topology
 4YBN A;  3AMF A;  3HE1 A;  3CB0 A;  3R5Z A;  2ARZ A;  1WLK A;  2IG6 A;  3EAA A;  4F07 A;  5BNC A;  2GJG A;  2K4Q A;  2D38 A;  4HMX A;  1W9A A;  2D5M A;  1G79 A;  3E4V A;  2HTD A;  1YLN A;  3IN6 A;  2HQ9 A;  3VKH A;  3BPK A;  2R0X A;  3VKG A;  3R5P A;  3BA3 A;  2OU5 A;  1RFE A;  1G78 A;  2HQ7 A;  2X1K A;  4N7R C;  2I51 A;  2I02 A;  3FKH A;  3NFW A;  1AXJ A;  4AKI A;  3R5Y A;  4HMV A;  4HKH A;  3VYA A;  1W3Q A;  4HMT A;  4TV4 A;  3BNK A;  1W3P A;  3HY8 A;  1Y12 A;  2OL5 A;  1WLI A;  3HMZ A;  3V4H A;  3U0I A;  4IRA A;  2A2J A;  2L1T A;  2X1J A;  4XJ2 A;  1YOA A;  3B5M A;  3ZOH A;  3VY2 A;  4XHY A;  5ESC A;  3EC6 A;  1XXO A;  1USF A;  4Y9I A;  2D36 A;  4W64 A;  2IAB A;  3KYF A;  2ED4 A;  3A20 A;  2E83 A;  1EJE A;  3A6Q A;  2ECU A;  4UHV A;  2IML A;  3DB0 A;  1WGB A;  2FG9 A;  4HMS A;  4ZKY A;  1DNL A;  4AI6 A;  3GAS A;  1RZ1 A;  3K86 A;  3TGV A;  2R6V A;  3PFT A;  2D37 A;  3ZOE A;  2FUR A;  3CP3 A;  1JNW A;  1W3R A;  4HMW A;  4Z85 A;  1TY9 A;  2FHQ A;  3H96 A;  2VPA A;  4L82 A;  2QEA A;  4AKG A;  4YWN A;  2ASF A;  5JAB A;  4MTK A;  1G77 A;  3A6R A;  3DNH A;  4AKH A;  2P5Z X;  2Q9K A;  2AQ6 A;  3ZOD A;  3U35 A;  1XHN A;  3U5W A;  1I0R A;  4HMU A;  2ECR A;  3ZOF A;  1CI0 A;  3U34 A;  1NRG A;  3FGE A;  5CHO A;  2HTI A;  3F7E A;  1RZ0 A;  3ZOG A;  2HHZ A;  1T9M A;  3KYG A;  3K88 A;  4HX6 A;  1VL7 A;  2RE7 A;  5CHE C;  1W3O A;  3ZOC A;  1USC A;  4QVB A;  3R5R A;  3VY5 A;  1I0S A;  1WV4 A;  2GUJ A;  3DMB A;  1FLM A;  1G76 A;  3AWH A;  2QCK A;  3R5L A;  3RH7 A;  3SWJ A;  3K87 A;  3R5W A;  2NR4 A;  4R82 A;  2PTF A;  2RDE A;  1Y30 A; 
#chains in the Genus database with same CATH homology
 4YBN A;  3AMF A;  3CB0 A;  3R5Z A;  2ARZ A;  1WLK A;  2IG6 A;  5BNC A;  4F07 A;  2GJG A;  2D38 A;  4HMX A;  1W9A A;  2D5M A;  1G79 A;  3E4V A;  2HTD A;  1YLN A;  3IN6 A;  2HQ9 A;  3BPK A;  2R0X A;  3R5P A;  3BA3 A;  2OU5 A;  1RFE A;  1G78 A;  2HQ7 A;  2X1K A;  4N7R C;  2I51 A;  2I02 A;  3FKH A;  3NFW A;  1AXJ A;  3R5Y A;  4HMV A;  3VYA A;  1W3Q A;  4HMT A;  3BNK A;  1W3P A;  3HY8 A;  2OL5 A;  1WLI A;  3HMZ A;  3U0I A;  4IRA A;  2A2J A;  2X1J A;  4XJ2 A;  3ZOH A;  1YOA A;  3B5M A;  3VY2 A;  4XHY A;  5ESC A;  3EC6 A;  1XXO A;  1USF A;  4Y9I A;  2D36 A;  2IAB A;  3KYF A;  2ED4 A;  3A20 A;  2E83 A;  1EJE A;  3A6Q A;  2ECU A;  2IML A;  3DB0 A;  1WGB A;  2FG9 A;  4HMS A;  4ZKY A;  1DNL A;  3GAS A;  1RZ1 A;  3K86 A;  3TGV A;  2R6V A;  3PFT A;  2D37 A;  3ZOE A;  2FUR A;  3CP3 A;  1JNW A;  1W3R A;  4HMW A;  4Z85 A;  1TY9 A;  2FHQ A;  3H96 A;  2VPA A;  4L82 A;  2QEA A;  4YWN A;  2ASF A;  5JAB A;  1G77 A;  3A6R A;  3DNH A;  2Q9K A;  2AQ6 A;  3ZOD A;  3U35 A;  1XHN A;  3U5W A;  1I0R A;  4HMU A;  2ECR A;  3ZOF A;  1CI0 A;  3U34 A;  1NRG A;  3FGE A;  5CHO A;  2HTI A;  3F7E A;  1RZ0 A;  3ZOG A;  2HHZ A;  1T9M A;  3KYG A;  3K88 A;  4HX6 A;  1VL7 A;  2RE7 A;  5CHE C;  1W3O A;  3ZOC A;  1USC A;  4QVB A;  3R5R A;  3VY5 A;  1I0S A;  1WV4 A;  3DMB A;  1FLM A;  1G76 A;  3AWH A;  2QCK A;  3R5L A;  3RH7 A;  3SWJ A;  3K87 A;  3R5W A;  2NR4 A;  4R82 A;  2PTF A;  2RDE A;  1Y30 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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