1WLIA

L122y mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
122
structure length
122
Chain Sequence
MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Determination of the role of the Carboxyl-terminal leucine-122 in FMN-binding protein by mutational and structural analysis.
pubmed doi rcsb
molecule tags Electron transport
source organism Desulfovibrio vulgaris str. 'miyazaki f'
molecule keywords FMN-binding protein
total genus 29
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1wliA00
2HQ9A 3ZOHA 3VY2A 2HTIA 2RDEA 3U34A 3BA3A 2X1KA 3K88A 2IMLA 1DNLA 2A2JA 1RZ1A 1WV4A 2NR4A 3R5WA 4R82A 2I02A 1W3OA 2D5MA 3K87A 3ZOGA 2HHZA 4HMTA 2IABA 3SWJA 1I0SA 3FGEA 5JABA 3R5ZA 4YBNA 4F07A 5CHOA 1G77A 2OL5A 2PTFA 3KYGA 2QCKA 5BNCA 3FKHA 4ZKYA 3F7EA 2R0XA 3AMFA 3VYAA 4Y9IA 2VPAA 1T9MA 2FURA 3K86A 3TGVA 2FHQA 2GJGA 3A6QA 4N7RC 2ECUA 3ZOFA 3R5LA 4IRAA 2D36A 4HMXA 2IG6A 2ASFA 5ESCA 3R5RA 1W3RA 2ED4A 1FLMA 1VL7A 2ARZA 3IN6A 4HMVA 3NFWA 3A6RA 1CI0A 1RZ0A 3RH7A 1YLNA 3CB0A 1G76A 3ZOCA 4L82A 1XXOA 2HTDA 1EJEA 2D37A 1W3PA 2AQ6A 3HY8A 1G78A 4XJ2A 3DMBA 2QEAA 1YOAA 1WLKA 3ZODA 2RE7A 1JNWA 1XHNA 4YWNA 5CHEC 3PFTA 3B5MA 3GASA 2R6VA 3A20A 2ECRA 1I0RA 1Y30A 3BNKA 3ZOEA 2E83A 3VY5A 3U0IA 1TY9A 3R5YA 1USCA 1RFEA 3BPKA 1W9AA 1WGBA 3R5PA 1AXJA 4XHYA 2OU5A 1W3QA 4QVBA 4HMWA 3AWHA 3U35A 3HMZA 3CP3A 1WLIA 2X1JA 2FG9A 4HX6A 2D38A 2Q9KA 3DB0A 3KYFA 1NRGA 4Z85A 3E4VA 1USFA 4HMSA 1G79A 3EC6A 3U5WA 3DNHA 2HQ7A 3H96A 2I51A 4HMUA
chains in the Genus database with same CATH superfamily
2HQ9A 3ZOHA 3VY2A 2HTIA 2RDEA 3U34A 3BA3A 2X1KA 3K88A 2GUJA 2IMLA 1DNLA 2A2JA 1RZ1A 1WV4A 2NR4A 3R5WA 4TV4A 4R82A 4MTKA 2I02A 1W3OA 2D5MA 3K87A 3ZOGA 2HHZA 4HMTA 2IABA 3SWJA 1I0SA 3FGEA 5JABA 1Y12A 3R5ZA 4YBNA 3V4HA 4F07A 5CHOA 1G77A 2OL5A 3HE1A 2PTFA 3KYGA 2QCKA 5BNCA 2L1TA 3FKHA 4ZKYA 3F7EA 2R0XA 3AMFA 3VYAA 4Y9IA 2VPAA 1T9MA 2FURA 3K86A 3TGVA 2FHQA 2GJGA 3A6QA 4N7RC 2ECUA 3ZOFA 3R5LA 4IRAA 2D36A 4HMXA 2IG6A 2ASFA 5ESCA 3R5RA 1W3RA 2ED4A 1FLMA 1VL7A 2ARZA 3IN6A 4HMVA 3NFWA 3A6RA 1CI0A 1RZ0A 3RH7A 4W64A 1YLNA 3CB0A 1G76A 3ZOCA 4L82A 1XXOA 2HTDA 1EJEA 2D37A 1W3PA 2AQ6A 3HY8A 1G78A 4XJ2A 3DMBA 2QEAA 1YOAA 1WLKA 3ZODA 2RE7A 1JNWA 1XHNA 4YWNA 5CHEC 3PFTA 3B5MA 3GASA 2R6VA 3A20A 2ECRA 1I0RA 1Y30A 3BNKA 3ZOEA 2E83A 3VY5A 3U0IA 1TY9A 3R5YA 1USCA 1RFEA 4HKHA 4UHVA 3BPKA 1W9AA 1WGBA 3R5PA 1AXJA 4XHYA 2OU5A 1W3QA 4QVBA 4HMWA 2P5ZX 3AWHA 3U35A 3HMZA 3CP3A 1WLIA 2X1JA 2FG9A 4HX6A 2D38A 2Q9KA 3DB0A 3KYFA 1NRGA 4Z85A 3E4VA 1USFA 4HMSA 1G79A 3EC6A 2K4QA 3EAAA 3U5WA 3DNHA 2HQ7A 3H96A 2I51A 4HMUA
chains in the Genus database with same CATH topology
2HQ9A 3ZOHA 3VY2A 2HTIA 2RDEA 3U34A 3BA3A 2X1KA 3K88A 2IMLA 1DNLA 2A2JA 1RZ1A 1WV4A 2NR4A 3R5WA 4R82A 2I02A 1W3OA 2D5MA 3K87A 3ZOGA 2HHZA 4HMTA 2IABA 3SWJA 1I0SA 3FGEA 5JABA 3R5ZA 4YBNA 4F07A 5CHOA 1G77A 2OL5A 2PTFA 3KYGA 2QCKA 5BNCA 3FKHA 4ZKYA 3F7EA 2R0XA 3AMFA 3VYAA 4Y9IA 2VPAA 1T9MA 2FURA 3K86A 3TGVA 2FHQA 2GJGA 3A6QA 4N7RC 2ECUA 3ZOFA 3R5LA 4IRAA 2D36A 4HMXA 2IG6A 2ASFA 5ESCA 3R5RA 1W3RA 2ED4A 1FLMA 1VL7A 2ARZA 3IN6A 4HMVA 3NFWA 3A6RA 1CI0A 1RZ0A 3RH7A 1YLNA 3CB0A 1G76A 3ZOCA 4L82A 1XXOA 2HTDA 1EJEA 2D37A 1W3PA 2AQ6A 3HY8A 1G78A 4XJ2A 3DMBA 2QEAA 1YOAA 1WLKA 3ZODA 2RE7A 1JNWA 1XHNA 4YWNA 5CHEC 3PFTA 3B5MA 3GASA 2R6VA 3A20A 2ECRA 1I0RA 1Y30A 3BNKA 3ZOEA 2E83A 3VY5A 3U0IA 1TY9A 3R5YA 1USCA 1RFEA 3BPKA 1W9AA 1WGBA 3R5PA 1AXJA 4XHYA 2OU5A 1W3QA 4QVBA 4HMWA 3AWHA 3U35A 3HMZA 3CP3A 1WLIA 2X1JA 2FG9A 4HX6A 2D38A 2Q9KA 3DB0A 3KYFA 1NRGA 4Z85A 3E4VA 1USFA 4HMSA 1G79A 3EC6A 3U5WA 3DNHA 2HQ7A 3H96A 2I51A 4HMUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HQ9 A;  3ZOH A;  3VY2 A;  2HTI A;  2RDE A;  3U34 A;  3BA3 A;  2X1K A;  3K88 A;  2IML A;  1DNL A;  2A2J A;  1RZ1 A;  1WV4 A;  2NR4 A;  3R5W A;  4R82 A;  2I02 A;  1W3O A;  2D5M A;  3K87 A;  3ZOG A;  2HHZ A;  4HMT A;  2IAB A;  3SWJ A;  1I0S A;  3FGE A;  5JAB A;  3R5Z A;  4YBN A;  4F07 A;  5CHO A;  1G77 A;  2OL5 A;  2PTF A;  3KYG A;  2QCK A;  5BNC A;  3FKH A;  4ZKY A;  3F7E A;  2R0X A;  3AMF A;  3VYA A;  4Y9I A;  2VPA A;  1T9M A;  2FUR A;  3K86 A;  3TGV A;  2FHQ A;  2GJG A;  3A6Q A;  4N7R C;  2ECU A;  3ZOF A;  3R5L A;  4IRA A;  2D36 A;  4HMX A;  2IG6 A;  2ASF A;  5ESC A;  3R5R A;  1W3R A;  2ED4 A;  1FLM A;  1VL7 A;  2ARZ A;  3IN6 A;  4HMV A;  3NFW A;  3A6R A;  1CI0 A;  1RZ0 A;  3RH7 A;  1YLN A;  3CB0 A;  1G76 A;  3ZOC A;  4L82 A;  1XXO A;  2HTD A;  1EJE A;  2D37 A;  1W3P A;  2AQ6 A;  3HY8 A;  1G78 A;  4XJ2 A;  3DMB A;  2QEA A;  1YOA A;  1WLK A;  3ZOD A;  2RE7 A;  1JNW A;  1XHN A;  4YWN A;  5CHE C;  3PFT A;  3B5M A;  3GAS A;  2R6V A;  3A20 A;  2ECR A;  1I0R A;  1Y30 A;  3BNK A;  3ZOE A;  2E83 A;  3VY5 A;  3U0I A;  1TY9 A;  3R5Y A;  1USC A;  1RFE A;  3BPK A;  1W9A A;  1WGB A;  3R5P A;  1AXJ A;  4XHY A;  2OU5 A;  1W3Q A;  4QVB A;  4HMW A;  3AWH A;  3U35 A;  3HMZ A;  3CP3 A;  1WLI A;  2X1J A;  2FG9 A;  4HX6 A;  2D38 A;  2Q9K A;  3DB0 A;  3KYF A;  1NRG A;  4Z85 A;  3E4V A;  1USF A;  4HMS A;  1G79 A;  3EC6 A;  3U5W A;  3DNH A;  2HQ7 A;  3H96 A;  2I51 A;  4HMU A; 
#chains in the Genus database with same CATH topology
 2HQ9 A;  3ZOH A;  3VY2 A;  2HTI A;  2RDE A;  3U34 A;  3BA3 A;  2X1K A;  3K88 A;  2GUJ A;  2IML A;  1DNL A;  2A2J A;  1RZ1 A;  1WV4 A;  2NR4 A;  3R5W A;  4TV4 A;  4R82 A;  4MTK A;  2I02 A;  1W3O A;  2D5M A;  3K87 A;  3ZOG A;  2HHZ A;  4HMT A;  2IAB A;  3SWJ A;  1I0S A;  3FGE A;  5JAB A;  1Y12 A;  3R5Z A;  4YBN A;  3V4H A;  4F07 A;  5CHO A;  1G77 A;  2OL5 A;  3HE1 A;  2PTF A;  3KYG A;  2QCK A;  5BNC A;  2L1T A;  3FKH A;  4ZKY A;  3F7E A;  2R0X A;  3AMF A;  3VYA A;  4Y9I A;  2VPA A;  1T9M A;  2FUR A;  3K86 A;  3TGV A;  2FHQ A;  2GJG A;  3A6Q A;  4N7R C;  2ECU A;  3ZOF A;  3R5L A;  4IRA A;  2D36 A;  4HMX A;  2IG6 A;  2ASF A;  5ESC A;  3R5R A;  1W3R A;  2ED4 A;  1FLM A;  1VL7 A;  2ARZ A;  3IN6 A;  4HMV A;  3NFW A;  3A6R A;  1CI0 A;  1RZ0 A;  3RH7 A;  4W64 A;  1YLN A;  3CB0 A;  1G76 A;  3ZOC A;  4L82 A;  1XXO A;  2HTD A;  1EJE A;  2D37 A;  1W3P A;  2AQ6 A;  3HY8 A;  1G78 A;  4XJ2 A;  3DMB A;  2QEA A;  1YOA A;  1WLK A;  3ZOD A;  2RE7 A;  1JNW A;  1XHN A;  4YWN A;  5CHE C;  3PFT A;  3B5M A;  3GAS A;  2R6V A;  3A20 A;  2ECR A;  1I0R A;  1Y30 A;  3BNK A;  3ZOE A;  2E83 A;  3VY5 A;  3U0I A;  1TY9 A;  3R5Y A;  1USC A;  1RFE A;  4HKH A;  4UHV A;  3BPK A;  1W9A A;  1WGB A;  3R5P A;  1AXJ A;  4XHY A;  2OU5 A;  1W3Q A;  4QVB A;  4HMW A;  2P5Z X;  3AWH A;  3U35 A;  3HMZ A;  3CP3 A;  1WLI A;  2X1J A;  2FG9 A;  4HX6 A;  2D38 A;  2Q9K A;  3DB0 A;  3KYF A;  1NRG A;  4Z85 A;  3E4V A;  1USF A;  4HMS A;  1G79 A;  3EC6 A;  2K4Q A;  3EAA A;  3U5W A;  3DNH A;  2HQ7 A;  3H96 A;  2I51 A;  4HMU A; 
#chains in the Genus database with same CATH homology
 2HQ9 A;  3ZOH A;  3VY2 A;  2HTI A;  2RDE A;  3U34 A;  3BA3 A;  2X1K A;  3K88 A;  2IML A;  1DNL A;  2A2J A;  1RZ1 A;  1WV4 A;  2NR4 A;  3R5W A;  4R82 A;  2I02 A;  1W3O A;  2D5M A;  3K87 A;  3ZOG A;  2HHZ A;  4HMT A;  2IAB A;  3SWJ A;  1I0S A;  3FGE A;  5JAB A;  3R5Z A;  4YBN A;  4F07 A;  5CHO A;  1G77 A;  2OL5 A;  2PTF A;  3KYG A;  2QCK A;  5BNC A;  3FKH A;  4ZKY A;  3F7E A;  2R0X A;  3AMF A;  3VYA A;  4Y9I A;  2VPA A;  1T9M A;  2FUR A;  3K86 A;  3TGV A;  2FHQ A;  2GJG A;  3A6Q A;  4N7R C;  2ECU A;  3ZOF A;  3R5L A;  4IRA A;  2D36 A;  4HMX A;  2IG6 A;  2ASF A;  5ESC A;  3R5R A;  1W3R A;  2ED4 A;  1FLM A;  1VL7 A;  2ARZ A;  3IN6 A;  4HMV A;  3NFW A;  3A6R A;  1CI0 A;  1RZ0 A;  3RH7 A;  1YLN A;  3CB0 A;  1G76 A;  3ZOC A;  4L82 A;  1XXO A;  2HTD A;  1EJE A;  2D37 A;  1W3P A;  2AQ6 A;  3HY8 A;  1G78 A;  4XJ2 A;  3DMB A;  2QEA A;  1YOA A;  1WLK A;  3ZOD A;  2RE7 A;  1JNW A;  1XHN A;  4YWN A;  5CHE C;  3PFT A;  3B5M A;  3GAS A;  2R6V A;  3A20 A;  2ECR A;  1I0R A;  1Y30 A;  3BNK A;  3ZOE A;  2E83 A;  3VY5 A;  3U0I A;  1TY9 A;  3R5Y A;  1USC A;  1RFE A;  3BPK A;  1W9A A;  1WGB A;  3R5P A;  1AXJ A;  4XHY A;  2OU5 A;  1W3Q A;  4QVB A;  4HMW A;  3AWH A;  3U35 A;  3HMZ A;  3CP3 A;  1WLI A;  2X1J A;  2FG9 A;  4HX6 A;  2D38 A;  2Q9K A;  3DB0 A;  3KYF A;  1NRG A;  4Z85 A;  3E4V A;  1USF A;  4HMS A;  1G79 A;  3EC6 A;  3U5W A;  3DNH A;  2HQ7 A;  3H96 A;  2I51 A;  4HMU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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