1CI0A

Pnp oxidase from saccharomyces cerevisiae
Total Genus 59

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
205
structure length
205
Chain Sequence
FTLNEKQLTDDPIDLFTKWFNEAKEDPRETLPEAITFSSAELPSGRVSSRILLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRRKTENDPWKVVRLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI5 (202-205)TIV5 (91-94)3H1 (28-30)TIV4 (90-93)TVIII1 (32-35)S3 (85-90)TIV1 (52-55)AH1 (35-48)TI3 (81-84)S1 (57-64)TI2 (54-57)3H2 (113-115)O1 (103-105)S6 (186-200)AH3 (130-139)TIV2 (64-67)AH5 (160-174)TIV3 (65-68)S2 (69-80)TIV6 (174-177)TIV7 (177-180)AH2 (95-102)S5 (117-127)AH4 (142-150)TII1 (152-155)TI4 (183-186)S4 (105-112)TI1 (49-52)Updating...
connected with : NaN
publication title The Structure of PNP Oxidase from S. Cerevisiae
rcsb
molecule keywords PROTEIN (PNP OXIDASE)
molecule tags Oxidoreductase
source organism Saccharomyces cerevisiae
total genus 59
structure length 205
sequence length 205
chains with identical sequence B
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 1999-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1ci0A00
4HMVA 3CP3A 1WLKA 1T9MA 5CHEC 3DMBA 3ZOEA 3U35A 2RDEA 3R5RA 3DB0A 1Y30A 4N7RC 3A6RA 3BA3A 1XXOA 3GASA 3BPKA 3U0IA 1YOAA 1DNLA 2E83A 2R0XA 3VYAA 1G76A 1TY9A 2I02A 3IN6A 4L82A 3R5LA 4HMWA 1YLNA 1RZ1A 3KYGA 3AWHA 2ARZA 2OU5A 1EJEA 2A2JA 2IG6A 4YBNA 1G77A 2HHZA 2NR4A 1USFA 2X1JA 1USCA 1XHNA 2ECRA 4Y9IA 3HMZA 3VY5A 3B5MA 3HY8A 1W3QA 2I51A 2Q9KA 4Z85A 2QEAA 1W3PA 1RFEA 2X1KA 3U5WA 3R5YA 2R6VA 3K86A 2PTFA 2IABA 3FGEA 1JNWA 2D36A 2FURA 1I0SA 2D37A 3ZOCA 1FLMA 4HMTA 2VPAA 3PFTA 3ZODA 1I0RA 2QCKA 3TGVA 2ASFA 3ZOFA 3BNKA 3A6QA 4HMSA 2ECUA 4IRAA 3RH7A 1G78A 5ESCA 2ED4A 1VL7A 3AMFA 1G79A 3R5PA 2D5MA 3U34A 3E4VA 4R82A 3H96A 4F07A 4HMXA 2HQ9A 2HTIA 2OL5A 3ZOGA 1WV4A 3SWJA 3NFWA 1RZ0A 2FHQA 2AQ6A 3K87A 3R5WA 3DNHA 1WLIA 4XHYA 3FKHA 5CHOA 1W9AA 3KYFA 3EC6A 3CB0A 1W3RA 2GJGA 4QVBA 1AXJA 1CI0A 2RE7A 1NRGA 3R5ZA 2HQ7A 4HX6A 4XJ2A 5JABA 2FG9A 5BNCA 2HTDA 3A20A 2IMLA 3ZOHA 3F7EA 4ZKYA 3VY2A 3K88A 4HMUA 4YWNA 1WGBA 1W3OA 2D38A
chains in the Genus database with same CATH superfamily
4HMVA 3V4HA 3CP3A 1WLKA 1T9MA 5CHEC 3DMBA 3ZOEA 3U35A 2RDEA 3R5RA 3DB0A 1Y30A 4N7RC 3A6RA 3BA3A 4HKHA 1XXOA 3GASA 3BPKA 4W64A 3U0IA 1YOAA 1DNLA 2E83A 2R0XA 3VYAA 1G76A 1TY9A 2I02A 3IN6A 2P5ZX 4L82A 3R5LA 4HMWA 1YLNA 1RZ1A 3KYGA 3AWHA 2ARZA 2OU5A 2L1TA 1EJEA 2A2JA 2IG6A 4YBNA 1G77A 2HHZA 2NR4A 1USFA 2X1JA 1USCA 1XHNA 2ECRA 4Y9IA 4UHVA 3HMZA 3VY5A 3B5MA 3HY8A 1W3QA 2I51A 2Q9KA 4Z85A 2QEAA 1W3PA 1Y12A 1RFEA 2X1KA 2GUJA 3U5WA 3R5YA 2R6VA 3K86A 2PTFA 2IABA 3FGEA 1JNWA 2D36A 2FURA 1I0SA 2D37A 3ZOCA 1FLMA 4HMTA 2VPAA 3PFTA 3ZODA 1I0RA 2QCKA 3TGVA 2ASFA 3ZOFA 3BNKA 3A6QA 4HMSA 2ECUA 4IRAA 3RH7A 1G78A 5ESCA 2ED4A 1VL7A 3AMFA 1G79A 3R5PA 2D5MA 3U34A 3E4VA 4R82A 3H96A 4F07A 4HMXA 2HQ9A 2HTIA 2OL5A 3ZOGA 1WV4A 4MTKA 3SWJA 3NFWA 1RZ0A 2FHQA 2AQ6A 3K87A 3R5WA 3DNHA 1WLIA 4XHYA 3FKHA 5CHOA 1W9AA 3KYFA 3EC6A 3CB0A 1W3RA 2GJGA 4QVBA 2K4QA 1AXJA 1CI0A 2RE7A 1NRGA 3EAAA 2HQ7A 3R5ZA 3HE1A 4HX6A 4XJ2A 5JABA 2FG9A 5BNCA 2HTDA 3A20A 2IMLA 3ZOHA 3F7EA 4ZKYA 3VY2A 3K88A 4HMUA 4TV4A 4YWNA 1WGBA 1W3OA 2D38A
chains in the Genus database with same CATH topology
4HMVA 3CP3A 1WLKA 1T9MA 5CHEC 3DMBA 3ZOEA 3U35A 2RDEA 3R5RA 3DB0A 1Y30A 4N7RC 3A6RA 3BA3A 1XXOA 3GASA 3BPKA 3U0IA 1YOAA 1DNLA 2E83A 2R0XA 3VYAA 1G76A 1TY9A 2I02A 3IN6A 4L82A 3R5LA 4HMWA 1YLNA 1RZ1A 3KYGA 3AWHA 2ARZA 2OU5A 1EJEA 2A2JA 2IG6A 4YBNA 1G77A 2HHZA 2NR4A 1USFA 2X1JA 1USCA 1XHNA 2ECRA 4Y9IA 3HMZA 3VY5A 3B5MA 3HY8A 1W3QA 2I51A 2Q9KA 4Z85A 2QEAA 1W3PA 1RFEA 2X1KA 3U5WA 3R5YA 2R6VA 3K86A 2PTFA 2IABA 3FGEA 1JNWA 2D36A 2FURA 1I0SA 2D37A 3ZOCA 1FLMA 4HMTA 2VPAA 3PFTA 3ZODA 1I0RA 2QCKA 3TGVA 2ASFA 3ZOFA 3BNKA 3A6QA 4HMSA 2ECUA 4IRAA 3RH7A 1G78A 5ESCA 2ED4A 1VL7A 3AMFA 1G79A 3R5PA 2D5MA 3U34A 3E4VA 4R82A 3H96A 4F07A 4HMXA 2HQ9A 2HTIA 2OL5A 3ZOGA 1WV4A 3SWJA 3NFWA 1RZ0A 2FHQA 2AQ6A 3K87A 3R5WA 3DNHA 1WLIA 4XHYA 3FKHA 5CHOA 1W9AA 3KYFA 3EC6A 3CB0A 1W3RA 2GJGA 4QVBA 1AXJA 1CI0A 2RE7A 1NRGA 3R5ZA 2HQ7A 4HX6A 4XJ2A 5JABA 2FG9A 5BNCA 2HTDA 3A20A 2IMLA 3ZOHA 3F7EA 4ZKYA 3VY2A 3K88A 4HMUA 4YWNA 1WGBA 1W3OA 2D38A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HMV A;  3CP3 A;  1WLK A;  1T9M A;  5CHE C;  3DMB A;  3ZOE A;  3U35 A;  2RDE A;  3R5R A;  3DB0 A;  1Y30 A;  4N7R C;  3A6R A;  3BA3 A;  1XXO A;  3GAS A;  3BPK A;  3U0I A;  1YOA A;  1DNL A;  2E83 A;  2R0X A;  3VYA A;  1G76 A;  1TY9 A;  2I02 A;  3IN6 A;  4L82 A;  3R5L A;  4HMW A;  1YLN A;  1RZ1 A;  3KYG A;  3AWH A;  2ARZ A;  2OU5 A;  1EJE A;  2A2J A;  2IG6 A;  4YBN A;  1G77 A;  2HHZ A;  2NR4 A;  1USF A;  2X1J A;  1USC A;  1XHN A;  2ECR A;  4Y9I A;  3HMZ A;  3VY5 A;  3B5M A;  3HY8 A;  1W3Q A;  2I51 A;  2Q9K A;  4Z85 A;  2QEA A;  1W3P A;  1RFE A;  2X1K A;  3U5W A;  3R5Y A;  2R6V A;  3K86 A;  2PTF A;  2IAB A;  3FGE A;  1JNW A;  2D36 A;  2FUR A;  1I0S A;  2D37 A;  3ZOC A;  1FLM A;  4HMT A;  2VPA A;  3PFT A;  3ZOD A;  1I0R A;  2QCK A;  3TGV A;  2ASF A;  3ZOF A;  3BNK A;  3A6Q A;  4HMS A;  2ECU A;  4IRA A;  3RH7 A;  1G78 A;  5ESC A;  2ED4 A;  1VL7 A;  3AMF A;  1G79 A;  3R5P A;  2D5M A;  3U34 A;  3E4V A;  4R82 A;  3H96 A;  4F07 A;  4HMX A;  2HQ9 A;  2HTI A;  2OL5 A;  3ZOG A;  1WV4 A;  3SWJ A;  3NFW A;  1RZ0 A;  2FHQ A;  2AQ6 A;  3K87 A;  3R5W A;  3DNH A;  1WLI A;  4XHY A;  3FKH A;  5CHO A;  1W9A A;  3KYF A;  3EC6 A;  3CB0 A;  1W3R A;  2GJG A;  4QVB A;  1AXJ A;  1CI0 A;  2RE7 A;  1NRG A;  3R5Z A;  2HQ7 A;  4HX6 A;  4XJ2 A;  5JAB A;  2FG9 A;  5BNC A;  2HTD A;  3A20 A;  2IML A;  3ZOH A;  3F7E A;  4ZKY A;  3VY2 A;  3K88 A;  4HMU A;  4YWN A;  1WGB A;  1W3O A;  2D38 A; 
#chains in the Genus database with same CATH topology
 4HMV A;  3V4H A;  3CP3 A;  1WLK A;  1T9M A;  5CHE C;  3DMB A;  3ZOE A;  3U35 A;  2RDE A;  3R5R A;  3DB0 A;  1Y30 A;  4N7R C;  3A6R A;  3BA3 A;  4HKH A;  1XXO A;  3GAS A;  3BPK A;  4W64 A;  3U0I A;  1YOA A;  1DNL A;  2E83 A;  2R0X A;  3VYA A;  1G76 A;  1TY9 A;  2I02 A;  3IN6 A;  2P5Z X;  4L82 A;  3R5L A;  4HMW A;  1YLN A;  1RZ1 A;  3KYG A;  3AWH A;  2ARZ A;  2OU5 A;  2L1T A;  1EJE A;  2A2J A;  2IG6 A;  4YBN A;  1G77 A;  2HHZ A;  2NR4 A;  1USF A;  2X1J A;  1USC A;  1XHN A;  2ECR A;  4Y9I A;  4UHV A;  3HMZ A;  3VY5 A;  3B5M A;  3HY8 A;  1W3Q A;  2I51 A;  2Q9K A;  4Z85 A;  2QEA A;  1W3P A;  1Y12 A;  1RFE A;  2X1K A;  2GUJ A;  3U5W A;  3R5Y A;  2R6V A;  3K86 A;  2PTF A;  2IAB A;  3FGE A;  1JNW A;  2D36 A;  2FUR A;  1I0S A;  2D37 A;  3ZOC A;  1FLM A;  4HMT A;  2VPA A;  3PFT A;  3ZOD A;  1I0R A;  2QCK A;  3TGV A;  2ASF A;  3ZOF A;  3BNK A;  3A6Q A;  4HMS A;  2ECU A;  4IRA A;  3RH7 A;  1G78 A;  5ESC A;  2ED4 A;  1VL7 A;  3AMF A;  1G79 A;  3R5P A;  2D5M A;  3U34 A;  3E4V A;  4R82 A;  3H96 A;  4F07 A;  4HMX A;  2HQ9 A;  2HTI A;  2OL5 A;  3ZOG A;  1WV4 A;  4MTK A;  3SWJ A;  3NFW A;  1RZ0 A;  2FHQ A;  2AQ6 A;  3K87 A;  3R5W A;  3DNH A;  1WLI A;  4XHY A;  3FKH A;  5CHO A;  1W9A A;  3KYF A;  3EC6 A;  3CB0 A;  1W3R A;  2GJG A;  4QVB A;  2K4Q A;  1AXJ A;  1CI0 A;  2RE7 A;  1NRG A;  3EAA A;  2HQ7 A;  3R5Z A;  3HE1 A;  4HX6 A;  4XJ2 A;  5JAB A;  2FG9 A;  5BNC A;  2HTD A;  3A20 A;  2IML A;  3ZOH A;  3F7E A;  4ZKY A;  3VY2 A;  3K88 A;  4HMU A;  4TV4 A;  4YWN A;  1WGB A;  1W3O A;  2D38 A; 
#chains in the Genus database with same CATH homology
 4HMV A;  3CP3 A;  1WLK A;  1T9M A;  5CHE C;  3DMB A;  3ZOE A;  3U35 A;  2RDE A;  3R5R A;  3DB0 A;  1Y30 A;  4N7R C;  3A6R A;  3BA3 A;  1XXO A;  3GAS A;  3BPK A;  3U0I A;  1YOA A;  1DNL A;  2E83 A;  2R0X A;  3VYA A;  1G76 A;  1TY9 A;  2I02 A;  3IN6 A;  4L82 A;  3R5L A;  4HMW A;  1YLN A;  1RZ1 A;  3KYG A;  3AWH A;  2ARZ A;  2OU5 A;  1EJE A;  2A2J A;  2IG6 A;  4YBN A;  1G77 A;  2HHZ A;  2NR4 A;  1USF A;  2X1J A;  1USC A;  1XHN A;  2ECR A;  4Y9I A;  3HMZ A;  3VY5 A;  3B5M A;  3HY8 A;  1W3Q A;  2I51 A;  2Q9K A;  4Z85 A;  2QEA A;  1W3P A;  1RFE A;  2X1K A;  3U5W A;  3R5Y A;  2R6V A;  3K86 A;  2PTF A;  2IAB A;  3FGE A;  1JNW A;  2D36 A;  2FUR A;  1I0S A;  2D37 A;  3ZOC A;  1FLM A;  4HMT A;  2VPA A;  3PFT A;  3ZOD A;  1I0R A;  2QCK A;  3TGV A;  2ASF A;  3ZOF A;  3BNK A;  3A6Q A;  4HMS A;  2ECU A;  4IRA A;  3RH7 A;  1G78 A;  5ESC A;  2ED4 A;  1VL7 A;  3AMF A;  1G79 A;  3R5P A;  2D5M A;  3U34 A;  3E4V A;  4R82 A;  3H96 A;  4F07 A;  4HMX A;  2HQ9 A;  2HTI A;  2OL5 A;  3ZOG A;  1WV4 A;  3SWJ A;  3NFW A;  1RZ0 A;  2FHQ A;  2AQ6 A;  3K87 A;  3R5W A;  3DNH A;  1WLI A;  4XHY A;  3FKH A;  5CHO A;  1W9A A;  3KYF A;  3EC6 A;  3CB0 A;  1W3R A;  2GJG A;  4QVB A;  1AXJ A;  1CI0 A;  2RE7 A;  1NRG A;  3R5Z A;  2HQ7 A;  4HX6 A;  4XJ2 A;  5JAB A;  2FG9 A;  5BNC A;  2HTD A;  3A20 A;  2IML A;  3ZOH A;  3F7E A;  4ZKY A;  3VY2 A;  3K88 A;  4HMU A;  4YWN A;  1WGB A;  1W3O A;  2D38 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.