1CI0 | Genus

Total Genus 59

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	59
sequence length	205
structure length	205
Chain Sequence	FTLNEKQLTDDPIDLFTKWFNEAKEDPRETLPEAITFSSAELPSGRVSSRILLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRRKTENDPWKVVRLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The Structure of PNP Oxidase from S. Cerevisiae rcsb
molecule keywords	PROTEIN (PNP OXIDASE)
molecule tags	Oxidoreductase
source organism	Saccharomyces cerevisiae
total genus	59
structure length	205
sequence length	205
chains with identical sequence	B
ec nomenclature	ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date	1999-04-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01243	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase
A	PF10590	PNP_phzG_C	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	1ci0A00

3R5YA 5CHOA 3SWJA 2D38A 1G77A 1WLIA 2FHQA 3R5WA 3ZOFA 2RDEA 3AMFA 2HTDA 3VY2A 1W3QA 1I0SA 3NFWA 1YLNA 3TGVA 1VL7A 2RE7A 3DMBA 1USFA 2HHZA 3HY8A 1W3RA 2HTIA 1DNLA 4F07A 3CB0A 3U35A 1WGBA 2FURA 3R5LA 4HMSA 1Y30A 2ASFA 2D37A 1WLKA 1WV4A 2X1KA 3ZOGA 2HQ7A 3K86A 2R6VA 2IMLA 4XHYA 1RZ0A 2ARZA 3A6QA 4HMWA 3H96A 1RZ1A 3BNKA 2Q9KA 3FGEA 3KYGA 1G78A 4YWNA 1XXOA 3PFTA 3B5MA 2I02A 1G79A 3CP3A 5JABA 2QCKA 1EJEA 4QVBA 3AWHA 3ZOCA 4HMTA 3VYAA 4ZKYA 2ECRA 2ECUA 2OU5A 3R5ZA 2I51A 3R5RA 2FG9A 3U5WA 2GJGA 3KYFA 1G76A 4HX6A 1W9AA 2HQ9A 3FKHA 4Y9IA 2IABA 2R0XA 4XJ2A 5CHEC 1FLMA 4HMUA 4R82A 4N7RC 3ZODA 3IN6A 5ESCA 5BNCA 3ZOHA 3E4VA 3U0IA 1JNWA 3ZOEA 1I0RA 3DNHA 4L82A 1W3OA 3VY5A 2ED4A 3BPKA 3K87A 1YOAA 3RH7A 1XHNA 2QEAA 4HMVA 3BA3A 4HMXA 2VPAA 2X1JA 1CI0A 2NR4A 2A2JA 1NRGA 3DB0A 2AQ6A 1W3PA 3R5PA 1RFEA 1T9MA 1TY9A 1AXJA 3F7EA 4Z85A 2IG6A 1USCA 2D5MA 2E83A 3U34A 2OL5A 3A20A 2D36A 4YBNA 3HMZA 4IRAA 3A6RA 2PTFA 3K88A 3GASA 3EC6A
chains in the Genus database with same CATH superfamily

3R5YA 1Y12A 5CHOA 2K4QA 3SWJA 2D38A 1G77A 1WLIA 2FHQA 3R5WA 3ZOFA 2RDEA 3AMFA 2HTDA 3VY2A 1W3QA 1I0SA 3NFWA 1YLNA 3TGVA 1VL7A 2RE7A 3V4HA 3DMBA 1USFA 2HHZA 3HY8A 4HKHA 1W3RA 3HE1A 2HTIA 1DNLA 4F07A 3CB0A 3U35A 1WGBA 4W64A 2FURA 3R5LA 4HMSA 1Y30A 2ASFA 4UHVA 2D37A 1WLKA 1WV4A 2X1KA 3ZOGA 2HQ7A 3K86A 2R6VA 2IMLA 3EAAA 4XHYA 1RZ0A 2P5ZX 2ARZA 3A6QA 4HMWA 3H96A 1RZ1A 3BNKA 2Q9KA 3FGEA 3KYGA 1G78A 4YWNA 1XXOA 3PFTA 3B5MA 2I02A 1G79A 3CP3A 5JABA 2QCKA 1EJEA 4QVBA 3AWHA 3ZOCA 4HMTA 3VYAA 4ZKYA 2ECRA 2ECUA 2OU5A 3R5ZA 2I51A 3R5RA 2FG9A 3U5WA 2GJGA 3KYFA 1G76A 4HX6A 1W9AA 2HQ9A 3FKHA 4Y9IA 2IABA 2R0XA 4XJ2A 5CHEC 1FLMA 4HMUA 4R82A 4N7RC 4TV4A 3ZODA 3IN6A 5ESCA 5BNCA 3ZOHA 3E4VA 3U0IA 1JNWA 3ZOEA 4MTKA 1I0RA 3DNHA 4L82A 1W3OA 3VY5A 2ED4A 3BPKA 3K87A 1YOAA 3RH7A 1XHNA 2L1TA 2QEAA 4HMVA 3BA3A 4HMXA 2VPAA 2X1JA 1CI0A 2NR4A 2A2JA 1NRGA 3DB0A 2AQ6A 1W3PA 3R5PA 1RFEA 1T9MA 1TY9A 1AXJA 3F7EA 4Z85A 2IG6A 1USCA 2D5MA 2E83A 2GUJA 2OL5A 3A20A 3U34A 2D36A 4YBNA 3HMZA 4IRAA 3A6RA 2PTFA 3K88A 3GASA 3EC6A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3R5Y A;  5CHO A;  3SWJ A;  2D38 A;  1G77 A;  1WLI A;  2FHQ A;  3R5W A;  3ZOF A;  2RDE A;  3AMF A;  2HTD A;  3VY2 A;  1W3Q A;  1I0S A;  3NFW A;  1YLN A;  3TGV A;  1VL7 A;  2RE7 A;  3DMB A;  1USF A;  2HHZ A;  3HY8 A;  1W3R A;  2HTI A;  1DNL A;  4F07 A;  3CB0 A;  3U35 A;  1WGB A;  2FUR A;  3R5L A;  4HMS A;  1Y30 A;  2ASF A;  2D37 A;  1WLK A;  1WV4 A;  2X1K A;  3ZOG A;  2HQ7 A;  3K86 A;  2R6V A;  2IML A;  4XHY A;  1RZ0 A;  2ARZ A;  3A6Q A;  4HMW A;  3H96 A;  1RZ1 A;  3BNK A;  2Q9K A;  3FGE A;  3KYG A;  1G78 A;  4YWN A;  1XXO A;  3PFT A;  3B5M A;  2I02 A;  1G79 A;  3CP3 A;  5JAB A;  2QCK A;  1EJE A;  4QVB A;  3AWH A;  3ZOC A;  4HMT A;  3VYA A;  4ZKY A;  2ECR A;  2ECU A;  2OU5 A;  3R5Z A;  2I51 A;  3R5R A;  2FG9 A;  3U5W A;  2GJG A;  3KYF A;  1G76 A;  4HX6 A;  1W9A A;  2HQ9 A;  3FKH A;  4Y9I A;  2IAB A;  2R0X A;  4XJ2 A;  5CHE C;  1FLM A;  4HMU A;  4R82 A;  4N7R C;  3ZOD A;  3IN6 A;  5ESC A;  5BNC A;  3ZOH A;  3E4V A;  3U0I A;  1JNW A;  3ZOE A;  1I0R A;  3DNH A;  4L82 A;  1W3O A;  3VY5 A;  2ED4 A;  3BPK A;  3K87 A;  1YOA A;  3RH7 A;  1XHN A;  2QEA A;  4HMV A;  3BA3 A;  4HMX A;  2VPA A;  2X1J A;  1CI0 A;  2NR4 A;  2A2J A;  1NRG A;  3DB0 A;  2AQ6 A;  1W3P A;  3R5P A;  1RFE A;  1T9M A;  1TY9 A;  1AXJ A;  3F7E A;  4Z85 A;  2IG6 A;  1USC A;  2D5M A;  2E83 A;  3U34 A;  2OL5 A;  3A20 A;  2D36 A;  4YBN A;  3HMZ A;  4IRA A;  3A6R A;  2PTF A;  3K88 A;  3GAS A;  3EC6 A; 
#chains in the Genus database with same CATH topology
 3R5Y A;  1Y12 A;  5CHO A;  2K4Q A;  3SWJ A;  2D38 A;  1G77 A;  1WLI A;  2FHQ A;  3R5W A;  3ZOF A;  2RDE A;  3AMF A;  2HTD A;  3VY2 A;  1W3Q A;  1I0S A;  3NFW A;  1YLN A;  3TGV A;  1VL7 A;  2RE7 A;  3V4H A;  3DMB A;  1USF A;  2HHZ A;  3HY8 A;  4HKH A;  1W3R A;  3HE1 A;  2HTI A;  1DNL A;  4F07 A;  3CB0 A;  3U35 A;  1WGB A;  4W64 A;  2FUR A;  3R5L A;  4HMS A;  1Y30 A;  2ASF A;  4UHV A;  2D37 A;  1WLK A;  1WV4 A;  2X1K A;  3ZOG A;  2HQ7 A;  3K86 A;  2R6V A;  2IML A;  3EAA A;  4XHY A;  1RZ0 A;  2P5Z X;  2ARZ A;  3A6Q A;  4HMW A;  3H96 A;  1RZ1 A;  3BNK A;  2Q9K A;  3FGE A;  3KYG A;  1G78 A;  4YWN A;  1XXO A;  3PFT A;  3B5M A;  2I02 A;  1G79 A;  3CP3 A;  5JAB A;  2QCK A;  1EJE A;  4QVB A;  3AWH A;  3ZOC A;  4HMT A;  3VYA A;  4ZKY A;  2ECR A;  2ECU A;  2OU5 A;  3R5Z A;  2I51 A;  3R5R A;  2FG9 A;  3U5W A;  2GJG A;  3KYF A;  1G76 A;  4HX6 A;  1W9A A;  2HQ9 A;  3FKH A;  4Y9I A;  2IAB A;  2R0X A;  4XJ2 A;  5CHE C;  1FLM A;  4HMU A;  4R82 A;  4N7R C;  4TV4 A;  3ZOD A;  3IN6 A;  5ESC A;  5BNC A;  3ZOH A;  3E4V A;  3U0I A;  1JNW A;  3ZOE A;  4MTK A;  1I0R A;  3DNH A;  4L82 A;  1W3O A;  3VY5 A;  2ED4 A;  3BPK A;  3K87 A;  1YOA A;  3RH7 A;  1XHN A;  2L1T A;  2QEA A;  4HMV A;  3BA3 A;  4HMX A;  2VPA A;  2X1J A;  1CI0 A;  2NR4 A;  2A2J A;  1NRG A;  3DB0 A;  2AQ6 A;  1W3P A;  3R5P A;  1RFE A;  1T9M A;  1TY9 A;  1AXJ A;  3F7E A;  4Z85 A;  2IG6 A;  1USC A;  2D5M A;  2E83 A;  2GUJ A;  2OL5 A;  3A20 A;  3U34 A;  2D36 A;  4YBN A;  3HMZ A;  4IRA A;  3A6R A;  2PTF A;  3K88 A;  3GAS A;  3EC6 A; 
#chains in the Genus database with same CATH homology
 3R5Y A;  5CHO A;  3SWJ A;  2D38 A;  1G77 A;  1WLI A;  2FHQ A;  3R5W A;  3ZOF A;  2RDE A;  3AMF A;  2HTD A;  3VY2 A;  1W3Q A;  1I0S A;  3NFW A;  1YLN A;  3TGV A;  1VL7 A;  2RE7 A;  3DMB A;  1USF A;  2HHZ A;  3HY8 A;  1W3R A;  2HTI A;  1DNL A;  4F07 A;  3CB0 A;  3U35 A;  1WGB A;  2FUR A;  3R5L A;  4HMS A;  1Y30 A;  2ASF A;  2D37 A;  1WLK A;  1WV4 A;  2X1K A;  3ZOG A;  2HQ7 A;  3K86 A;  2R6V A;  2IML A;  4XHY A;  1RZ0 A;  2ARZ A;  3A6Q A;  4HMW A;  3H96 A;  1RZ1 A;  3BNK A;  2Q9K A;  3FGE A;  3KYG A;  1G78 A;  4YWN A;  1XXO A;  3PFT A;  3B5M A;  2I02 A;  1G79 A;  3CP3 A;  5JAB A;  2QCK A;  1EJE A;  4QVB A;  3AWH A;  3ZOC A;  4HMT A;  3VYA A;  4ZKY A;  2ECR A;  2ECU A;  2OU5 A;  3R5Z A;  2I51 A;  3R5R A;  2FG9 A;  3U5W A;  2GJG A;  3KYF A;  1G76 A;  4HX6 A;  1W9A A;  2HQ9 A;  3FKH A;  4Y9I A;  2IAB A;  2R0X A;  4XJ2 A;  5CHE C;  1FLM A;  4HMU A;  4R82 A;  4N7R C;  3ZOD A;  3IN6 A;  5ESC A;  5BNC A;  3ZOH A;  3E4V A;  3U0I A;  1JNW A;  3ZOE A;  1I0R A;  3DNH A;  4L82 A;  1W3O A;  3VY5 A;  2ED4 A;  3BPK A;  3K87 A;  1YOA A;  3RH7 A;  1XHN A;  2QEA A;  4HMV A;  3BA3 A;  4HMX A;  2VPA A;  2X1J A;  1CI0 A;  2NR4 A;  2A2J A;  1NRG A;  3DB0 A;  2AQ6 A;  1W3P A;  3R5P A;  1RFE A;  1T9M A;  1TY9 A;  1AXJ A;  3F7E A;  4Z85 A;  2IG6 A;  1USC A;  2D5M A;  2E83 A;  3U34 A;  2OL5 A;  3A20 A;  2D36 A;  4YBN A;  3HMZ A;  4IRA A;  3A6R A;  2PTF A;  3K88 A;  3GAS A;  3EC6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1CI0A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations