1CI0A

Pnp oxidase from saccharomyces cerevisiae
Total Genus 59

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
205
structure length
205
Chain Sequence
FTLNEKQLTDDPIDLFTKWFNEAKEDPRETLPEAITFSSAELPSGRVSSRILLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRRKTENDPWKVVRLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI5 (202-205)TIV5 (91-94)3H1 (28-30)TIV4 (90-93)TVIII1 (32-35)S3 (85-90)TIV1 (52-55)AH1 (35-48)TI3 (81-84)S1 (57-64)TI2 (54-57)3H2 (113-115)O1 (103-105)S6 (186-200)AH3 (130-139)TIV2 (64-67)AH5 (160-174)TIV3 (65-68)S2 (69-80)TIV6 (174-177)TIV7 (177-180)AH2 (95-102)S5 (117-127)AH4 (142-150)TII1 (152-155)TI4 (183-186)S4 (105-112)TI1 (49-52)Updating...
connected with : NaN
publication title The Structure of PNP Oxidase from S. Cerevisiae
rcsb
molecule keywords PROTEIN (PNP OXIDASE)
molecule tags Oxidoreductase
source organism Saccharomyces cerevisiae
total genus 59
structure length 205
sequence length 205
chains with identical sequence B
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 1999-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1ci0A00
3R5RA 1VL7A 1XXOA 4R82A 2GJGA 2HTIA 1YLNA 3VY5A 4XJ2A 5ESCA 1WGBA 3FKHA 1W3OA 4YWNA 2HQ7A 2PTFA 3H96A 4YBNA 3U35A 3A20A 2AQ6A 2ECUA 2D38A 1G78A 5CHOA 1RZ0A 3VYAA 2ECRA 3ZOGA 3KYGA 1NRGA 4HX6A 4XHYA 3A6RA 4Z85A 4F07A 1XHNA 1W3RA 1YOAA 3SWJA 2ASFA 3K86A 4Y9IA 1RZ1A 2Q9KA 4QVBA 2X1KA 3ZODA 1FLMA 3BA3A 3B5MA 2FG9A 1EJEA 3PFTA 1TY9A 2I51A 2X1JA 2IMLA 2RDEA 2D37A 1W3PA 3AWHA 1WLKA 1G79A 1CI0A 3EC6A 4ZKYA 2HQ9A 4HMUA 3R5ZA 3CP3A 1RFEA 4HMWA 5CHEC 3ZOEA 3R5WA 3RH7A 3DNHA 1WLIA 3DMBA 3A6QA 2D5MA 2IABA 3ZOHA 5JABA 1AXJA 2HTDA 3HMZA 3ZOCA 1W9AA 3AMFA 1USFA 1T9MA 2NR4A 3K87A 5BNCA 1Y30A 3HY8A 1USCA 3CB0A 3TGVA 3U0IA 4HMSA 2I02A 2OU5A 3K88A 2ED4A 4IRAA 1I0RA 2A2JA 2HHZA 2OL5A 3R5PA 1WV4A 3E4VA 4HMXA 4N7RC 3DB0A 3U34A 1JNWA 1W3QA 2E83A 3R5LA 2FHQA 2ARZA 2VPAA 3FGEA 1I0SA 3GASA 1G76A 3IN6A 2QCKA 2RE7A 3ZOFA 2IG6A 3F7EA 2R0XA 4L82A 3VY2A 3R5YA 2FURA 1G77A 3NFWA 3KYFA 4HMVA 3BNKA 1DNLA 2D36A 2QEAA 4HMTA 2R6VA 3U5WA 3BPKA
chains in the Genus database with same CATH superfamily
3R5RA 1VL7A 1XXOA 4R82A 2GJGA 4MTKA 2HTIA 1YLNA 3VY5A 4XJ2A 5ESCA 1WGBA 3FKHA 1W3OA 4YWNA 2HQ7A 2PTFA 3H96A 4YBNA 3U35A 3A20A 2AQ6A 2ECUA 2D38A 1G78A 4UHVA 5CHOA 1RZ0A 3VYAA 2ECRA 3ZOGA 3KYGA 1NRGA 4HX6A 4XHYA 3A6RA 4Z85A 4F07A 1XHNA 1W3RA 1YOAA 3SWJA 3HE1A 4HKHA 2ASFA 2GUJA 3K86A 1RZ1A 4Y9IA 2Q9KA 4QVBA 2X1KA 3ZODA 1FLMA 3BA3A 3B5MA 2FG9A 1EJEA 3PFTA 1TY9A 2I51A 2X1JA 2IMLA 2RDEA 2D37A 1Y12A 1W3PA 3AWHA 1WLKA 1G79A 3V4HA 1CI0A 3EC6A 4ZKYA 2HQ9A 4HMUA 3R5ZA 3CP3A 2K4QA 1RFEA 4HMWA 5CHEC 3ZOEA 3R5WA 3RH7A 3DNHA 1WLIA 4W64A 3DMBA 3A6QA 2D5MA 2IABA 3ZOHA 5JABA 1AXJA 2HTDA 3HMZA 3ZOCA 1W9AA 3AMFA 1USFA 1T9MA 2NR4A 3K87A 5BNCA 1Y30A 3HY8A 1USCA 3CB0A 3TGVA 3U0IA 4HMSA 2I02A 2OU5A 3K88A 2ED4A 4IRAA 1I0RA 2A2JA 2HHZA 2OL5A 3R5PA 1WV4A 3E4VA 4HMXA 4N7RC 3DB0A 3U34A 1JNWA 1W3QA 2E83A 3R5LA 2L1TA 2FHQA 2ARZA 2VPAA 3FGEA 1I0SA 3GASA 1G76A 3IN6A 2QCKA 2RE7A 3ZOFA 2IG6A 3F7EA 2R0XA 4L82A 3VY2A 3R5YA 2FURA 1G77A 3NFWA 3KYFA 4HMVA 3BNKA 4TV4A 1DNLA 3EAAA 2D36A 2QEAA 4HMTA 2R6VA 2P5ZX 3U5WA 3BPKA
chains in the Genus database with same CATH topology
3R5RA 1VL7A 1XXOA 4R82A 2GJGA 2HTIA 1YLNA 3VY5A 4XJ2A 5ESCA 1WGBA 3FKHA 1W3OA 4YWNA 2HQ7A 2PTFA 3H96A 4YBNA 3U35A 3A20A 2AQ6A 2ECUA 2D38A 1G78A 5CHOA 1RZ0A 3VYAA 2ECRA 3ZOGA 3KYGA 1NRGA 4HX6A 4XHYA 3A6RA 4Z85A 4F07A 1XHNA 1W3RA 1YOAA 3SWJA 2ASFA 3K86A 4Y9IA 1RZ1A 2Q9KA 4QVBA 2X1KA 3ZODA 1FLMA 3BA3A 3B5MA 2FG9A 1EJEA 3PFTA 1TY9A 2I51A 2X1JA 2IMLA 2RDEA 2D37A 1W3PA 3AWHA 1WLKA 1G79A 1CI0A 3EC6A 4ZKYA 2HQ9A 4HMUA 3R5ZA 3CP3A 1RFEA 4HMWA 5CHEC 3ZOEA 3R5WA 3RH7A 3DNHA 1WLIA 3DMBA 3A6QA 2D5MA 2IABA 3ZOHA 5JABA 1AXJA 2HTDA 3HMZA 3ZOCA 1W9AA 3AMFA 1USFA 1T9MA 2NR4A 3K87A 5BNCA 1Y30A 3HY8A 1USCA 3CB0A 3TGVA 3U0IA 4HMSA 2I02A 2OU5A 3K88A 2ED4A 4IRAA 1I0RA 2A2JA 2HHZA 2OL5A 3R5PA 1WV4A 3E4VA 4HMXA 4N7RC 3DB0A 3U34A 1JNWA 1W3QA 2E83A 3R5LA 2FHQA 2ARZA 2VPAA 3FGEA 1I0SA 3GASA 1G76A 3IN6A 2QCKA 2RE7A 3ZOFA 2IG6A 3F7EA 2R0XA 4L82A 3VY2A 3R5YA 2FURA 1G77A 3NFWA 3KYFA 4HMVA 3BNKA 1DNLA 2D36A 2QEAA 4HMTA 2R6VA 3U5WA 3BPKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R5R A;  1VL7 A;  1XXO A;  4R82 A;  2GJG A;  2HTI A;  1YLN A;  3VY5 A;  4XJ2 A;  5ESC A;  1WGB A;  3FKH A;  1W3O A;  4YWN A;  2HQ7 A;  2PTF A;  3H96 A;  4YBN A;  3U35 A;  3A20 A;  2AQ6 A;  2ECU A;  2D38 A;  1G78 A;  5CHO A;  1RZ0 A;  3VYA A;  2ECR A;  3ZOG A;  3KYG A;  1NRG A;  4HX6 A;  4XHY A;  3A6R A;  4Z85 A;  4F07 A;  1XHN A;  1W3R A;  1YOA A;  3SWJ A;  2ASF A;  3K86 A;  4Y9I A;  1RZ1 A;  2Q9K A;  4QVB A;  2X1K A;  3ZOD A;  1FLM A;  3BA3 A;  3B5M A;  2FG9 A;  1EJE A;  3PFT A;  1TY9 A;  2I51 A;  2X1J A;  2IML A;  2RDE A;  2D37 A;  1W3P A;  3AWH A;  1WLK A;  1G79 A;  1CI0 A;  3EC6 A;  4ZKY A;  2HQ9 A;  4HMU A;  3R5Z A;  3CP3 A;  1RFE A;  4HMW A;  5CHE C;  3ZOE A;  3R5W A;  3RH7 A;  3DNH A;  1WLI A;  3DMB A;  3A6Q A;  2D5M A;  2IAB A;  3ZOH A;  5JAB A;  1AXJ A;  2HTD A;  3HMZ A;  3ZOC A;  1W9A A;  3AMF A;  1USF A;  1T9M A;  2NR4 A;  3K87 A;  5BNC A;  1Y30 A;  3HY8 A;  1USC A;  3CB0 A;  3TGV A;  3U0I A;  4HMS A;  2I02 A;  2OU5 A;  3K88 A;  2ED4 A;  4IRA A;  1I0R A;  2A2J A;  2HHZ A;  2OL5 A;  3R5P A;  1WV4 A;  3E4V A;  4HMX A;  4N7R C;  3DB0 A;  3U34 A;  1JNW A;  1W3Q A;  2E83 A;  3R5L A;  2FHQ A;  2ARZ A;  2VPA A;  3FGE A;  1I0S A;  3GAS A;  1G76 A;  3IN6 A;  2QCK A;  2RE7 A;  3ZOF A;  2IG6 A;  3F7E A;  2R0X A;  4L82 A;  3VY2 A;  3R5Y A;  2FUR A;  1G77 A;  3NFW A;  3KYF A;  4HMV A;  3BNK A;  1DNL A;  2D36 A;  2QEA A;  4HMT A;  2R6V A;  3U5W A;  3BPK A; 
#chains in the Genus database with same CATH topology
 3R5R A;  1VL7 A;  1XXO A;  4R82 A;  2GJG A;  4MTK A;  2HTI A;  1YLN A;  3VY5 A;  4XJ2 A;  5ESC A;  1WGB A;  3FKH A;  1W3O A;  4YWN A;  2HQ7 A;  2PTF A;  3H96 A;  4YBN A;  3U35 A;  3A20 A;  2AQ6 A;  2ECU A;  2D38 A;  1G78 A;  4UHV A;  5CHO A;  1RZ0 A;  3VYA A;  2ECR A;  3ZOG A;  3KYG A;  1NRG A;  4HX6 A;  4XHY A;  3A6R A;  4Z85 A;  4F07 A;  1XHN A;  1W3R A;  1YOA A;  3SWJ A;  3HE1 A;  4HKH A;  2ASF A;  2GUJ A;  3K86 A;  1RZ1 A;  4Y9I A;  2Q9K A;  4QVB A;  2X1K A;  3ZOD A;  1FLM A;  3BA3 A;  3B5M A;  2FG9 A;  1EJE A;  3PFT A;  1TY9 A;  2I51 A;  2X1J A;  2IML A;  2RDE A;  2D37 A;  1Y12 A;  1W3P A;  3AWH A;  1WLK A;  1G79 A;  3V4H A;  1CI0 A;  3EC6 A;  4ZKY A;  2HQ9 A;  4HMU A;  3R5Z A;  3CP3 A;  2K4Q A;  1RFE A;  4HMW A;  5CHE C;  3ZOE A;  3R5W A;  3RH7 A;  3DNH A;  1WLI A;  4W64 A;  3DMB A;  3A6Q A;  2D5M A;  2IAB A;  3ZOH A;  5JAB A;  1AXJ A;  2HTD A;  3HMZ A;  3ZOC A;  1W9A A;  3AMF A;  1USF A;  1T9M A;  2NR4 A;  3K87 A;  5BNC A;  1Y30 A;  3HY8 A;  1USC A;  3CB0 A;  3TGV A;  3U0I A;  4HMS A;  2I02 A;  2OU5 A;  3K88 A;  2ED4 A;  4IRA A;  1I0R A;  2A2J A;  2HHZ A;  2OL5 A;  3R5P A;  1WV4 A;  3E4V A;  4HMX A;  4N7R C;  3DB0 A;  3U34 A;  1JNW A;  1W3Q A;  2E83 A;  3R5L A;  2L1T A;  2FHQ A;  2ARZ A;  2VPA A;  3FGE A;  1I0S A;  3GAS A;  1G76 A;  3IN6 A;  2QCK A;  2RE7 A;  3ZOF A;  2IG6 A;  3F7E A;  2R0X A;  4L82 A;  3VY2 A;  3R5Y A;  2FUR A;  1G77 A;  3NFW A;  3KYF A;  4HMV A;  3BNK A;  4TV4 A;  1DNL A;  3EAA A;  2D36 A;  2QEA A;  4HMT A;  2R6V A;  2P5Z X;  3U5W A;  3BPK A; 
#chains in the Genus database with same CATH homology
 3R5R A;  1VL7 A;  1XXO A;  4R82 A;  2GJG A;  2HTI A;  1YLN A;  3VY5 A;  4XJ2 A;  5ESC A;  1WGB A;  3FKH A;  1W3O A;  4YWN A;  2HQ7 A;  2PTF A;  3H96 A;  4YBN A;  3U35 A;  3A20 A;  2AQ6 A;  2ECU A;  2D38 A;  1G78 A;  5CHO A;  1RZ0 A;  3VYA A;  2ECR A;  3ZOG A;  3KYG A;  1NRG A;  4HX6 A;  4XHY A;  3A6R A;  4Z85 A;  4F07 A;  1XHN A;  1W3R A;  1YOA A;  3SWJ A;  2ASF A;  3K86 A;  4Y9I A;  1RZ1 A;  2Q9K A;  4QVB A;  2X1K A;  3ZOD A;  1FLM A;  3BA3 A;  3B5M A;  2FG9 A;  1EJE A;  3PFT A;  1TY9 A;  2I51 A;  2X1J A;  2IML A;  2RDE A;  2D37 A;  1W3P A;  3AWH A;  1WLK A;  1G79 A;  1CI0 A;  3EC6 A;  4ZKY A;  2HQ9 A;  4HMU A;  3R5Z A;  3CP3 A;  1RFE A;  4HMW A;  5CHE C;  3ZOE A;  3R5W A;  3RH7 A;  3DNH A;  1WLI A;  3DMB A;  3A6Q A;  2D5M A;  2IAB A;  3ZOH A;  5JAB A;  1AXJ A;  2HTD A;  3HMZ A;  3ZOC A;  1W9A A;  3AMF A;  1USF A;  1T9M A;  2NR4 A;  3K87 A;  5BNC A;  1Y30 A;  3HY8 A;  1USC A;  3CB0 A;  3TGV A;  3U0I A;  4HMS A;  2I02 A;  2OU5 A;  3K88 A;  2ED4 A;  4IRA A;  1I0R A;  2A2J A;  2HHZ A;  2OL5 A;  3R5P A;  1WV4 A;  3E4V A;  4HMX A;  4N7R C;  3DB0 A;  3U34 A;  1JNW A;  1W3Q A;  2E83 A;  3R5L A;  2FHQ A;  2ARZ A;  2VPA A;  3FGE A;  1I0S A;  3GAS A;  1G76 A;  3IN6 A;  2QCK A;  2RE7 A;  3ZOF A;  2IG6 A;  3F7E A;  2R0X A;  4L82 A;  3VY2 A;  3R5Y A;  2FUR A;  1G77 A;  3NFW A;  3KYF A;  4HMV A;  3BNK A;  1DNL A;  2D36 A;  2QEA A;  4HMT A;  2R6V A;  3U5W A;  3BPK A; 
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similar chains in the Genus database (?% sequence similarity)
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