1CI0A

Pnp oxidase from saccharomyces cerevisiae
Total Genus 59

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
205
structure length
205
Chain Sequence
FTLNEKQLTDDPIDLFTKWFNEAKEDPRETLPEAITFSSAELPSGRVSSRILLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRRKTENDPWKVVRLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI5 (202-205)TIV5 (91-94)3H1 (28-30)TIV4 (90-93)TVIII1 (32-35)S3 (85-90)TIV1 (52-55)AH1 (35-48)TI3 (81-84)S1 (57-64)TI2 (54-57)3H2 (113-115)O1 (103-105)S6 (186-200)AH3 (130-139)TIV2 (64-67)AH5 (160-174)TIV3 (65-68)S2 (69-80)TIV6 (174-177)TIV7 (177-180)AH2 (95-102)S5 (117-127)AH4 (142-150)TII1 (152-155)TI4 (183-186)S4 (105-112)TI1 (49-52)Updating...
connected with : NaN
publication title The Structure of PNP Oxidase from S. Cerevisiae
rcsb
molecule keywords PROTEIN (PNP OXIDASE)
molecule tags Oxidoreductase
source organism Saccharomyces cerevisiae
total genus 59
structure length 205
sequence length 205
chains with identical sequence B
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 1999-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1ci0A00
1W3PA 4ZKYA 1YOAA 4HMXA 5CHEC 3BPKA 2I02A 4QVBA 3BA3A 1JNWA 1WLKA 2D5MA 2ECRA 1Y30A 3U5WA 2IMLA 3ZOFA 1FLMA 1G77A 5CHOA 2QEAA 1RZ1A 3ZOCA 3GASA 1G76A 1XXOA 2HTIA 2IABA 3CB0A 3BNKA 2ED4A 2IG6A 2OU5A 2ASFA 1USCA 2HQ7A 3PFTA 1CI0A 3FGEA 3FKHA 3U34A 4YWNA 1VL7A 3AWHA 3VY2A 2D38A 1I0RA 2RDEA 4L82A 2R0XA 4HMTA 2D36A 3ZOGA 2E83A 2HQ9A 2ECUA 1XHNA 3KYGA 3R5LA 1W3RA 3NFWA 1DNLA 3ZOEA 1I0SA 3R5YA 2PTFA 1USFA 2OL5A 3K87A 3R5PA 1WGBA 5BNCA 3SWJA 1TY9A 2FHQA 3U0IA 5ESCA 4Y9IA 2VPAA 2HTDA 2ARZA 3TGVA 2R6VA 1YLNA 1W3OA 3DNHA 3KYFA 1WV4A 3U35A 3CP3A 3R5ZA 1AXJA 1EJEA 4HMUA 3E4VA 3R5WA 1W3QA 4HMSA 1RFEA 4XJ2A 4YBNA 3ZOHA 3HY8A 1G78A 1WLIA 3VYAA 1T9MA 2NR4A 2X1KA 3A20A 4R82A 3K86A 4XHYA 3ZODA 3F7EA 1NRGA 3B5MA 3EC6A 4Z85A 3VY5A 3AMFA 4F07A 2RE7A 3H96A 2FG9A 4HMWA 2GJGA 4HX6A 3DMBA 4HMVA 2HHZA 2FURA 1G79A 2AQ6A 3K88A 2QCKA 3RH7A 3HMZA 1W9AA 4IRAA 2Q9KA 2I51A 3R5RA 2X1JA 3IN6A 3A6QA 1RZ0A 3DB0A 2D37A 3A6RA 4N7RC 2A2JA 5JABA
chains in the Genus database with same CATH superfamily
1W3PA 4ZKYA 1YOAA 4HMXA 5CHEC 3BPKA 2I02A 3EAAA 4QVBA 3BA3A 1JNWA 1WLKA 2D5MA 2ECRA 1Y30A 3U5WA 2IMLA 3ZOFA 1FLMA 1G77A 5CHOA 2QEAA 1RZ1A 3ZOCA 2K4QA 1G76A 1XXOA 3GASA 2HTIA 2IABA 3CB0A 4W64A 3BNKA 2ED4A 2IG6A 2OU5A 2ASFA 1USCA 2HQ7A 3PFTA 1CI0A 3FGEA 3FKHA 3U34A 4YWNA 1VL7A 3AWHA 3VY2A 2D38A 1I0RA 2RDEA 4L82A 2R0XA 4HMTA 2D36A 3ZOGA 2E83A 2HQ9A 2ECUA 1XHNA 3KYGA 3R5LA 1W3RA 3NFWA 1DNLA 3ZOEA 1I0SA 3R5YA 2PTFA 1USFA 2OL5A 3K87A 3R5PA 1WGBA 5BNCA 3SWJA 1TY9A 2FHQA 3U0IA 5ESCA 4Y9IA 2VPAA 2HTDA 2ARZA 3TGVA 3V4HA 2R6VA 1YLNA 1W3OA 3DNHA 3KYFA 1WV4A 3U35A 3CP3A 4MTKA 3R5ZA 3HE1A 1AXJA 1EJEA 4HMUA 3E4VA 3R5WA 1W3QA 4HMSA 1RFEA 4XJ2A 4YBNA 3ZOHA 3HY8A 1G78A 1WLIA 3VYAA 1T9MA 2NR4A 2X1KA 3A20A 4R82A 3K86A 4XHYA 3ZODA 3F7EA 4TV4A 1NRGA 3B5MA 3EC6A 4Z85A 3VY5A 3AMFA 4HKHA 4F07A 2RE7A 3H96A 2FG9A 4HMWA 2GJGA 4HX6A 2P5ZX 3DMBA 4HMVA 2HHZA 2FURA 1G79A 2AQ6A 3K88A 2QCKA 2L1TA 3RH7A 3HMZA 1W9AA 4IRAA 4UHVA 2Q9KA 2I51A 2GUJA 3R5RA 1Y12A 2X1JA 3IN6A 3A6QA 1RZ0A 3DB0A 2D37A 3A6RA 4N7RC 2A2JA 5JABA
chains in the Genus database with same CATH topology
1W3PA 4ZKYA 1YOAA 4HMXA 5CHEC 3BPKA 2I02A 4QVBA 3BA3A 1JNWA 1WLKA 2D5MA 2ECRA 1Y30A 3U5WA 2IMLA 3ZOFA 1FLMA 1G77A 5CHOA 2QEAA 1RZ1A 3ZOCA 3GASA 1G76A 1XXOA 2HTIA 2IABA 3CB0A 3BNKA 2ED4A 2IG6A 2OU5A 2ASFA 1USCA 2HQ7A 3PFTA 1CI0A 3FGEA 3FKHA 3U34A 4YWNA 1VL7A 3AWHA 3VY2A 2D38A 1I0RA 2RDEA 4L82A 2R0XA 4HMTA 2D36A 3ZOGA 2E83A 2HQ9A 2ECUA 1XHNA 3KYGA 3R5LA 1W3RA 3NFWA 1DNLA 3ZOEA 1I0SA 3R5YA 2PTFA 1USFA 2OL5A 3K87A 3R5PA 1WGBA 5BNCA 3SWJA 1TY9A 2FHQA 3U0IA 5ESCA 4Y9IA 2VPAA 2HTDA 2ARZA 3TGVA 2R6VA 1YLNA 1W3OA 3DNHA 3KYFA 1WV4A 3U35A 3CP3A 3R5ZA 1AXJA 1EJEA 4HMUA 3E4VA 3R5WA 1W3QA 4HMSA 1RFEA 4XJ2A 4YBNA 3ZOHA 3HY8A 1G78A 1WLIA 3VYAA 1T9MA 2NR4A 2X1KA 3A20A 4R82A 3K86A 4XHYA 3ZODA 3F7EA 1NRGA 3B5MA 3EC6A 4Z85A 3VY5A 3AMFA 4F07A 2RE7A 3H96A 2FG9A 4HMWA 2GJGA 4HX6A 3DMBA 4HMVA 2HHZA 2FURA 1G79A 2AQ6A 3K88A 2QCKA 3RH7A 3HMZA 1W9AA 4IRAA 2Q9KA 2I51A 3R5RA 2X1JA 3IN6A 3A6QA 1RZ0A 3DB0A 2D37A 3A6RA 4N7RC 2A2JA 5JABA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W3P A;  4ZKY A;  1YOA A;  4HMX A;  5CHE C;  3BPK A;  2I02 A;  4QVB A;  3BA3 A;  1JNW A;  1WLK A;  2D5M A;  2ECR A;  1Y30 A;  3U5W A;  2IML A;  3ZOF A;  1FLM A;  1G77 A;  5CHO A;  2QEA A;  1RZ1 A;  3ZOC A;  3GAS A;  1G76 A;  1XXO A;  2HTI A;  2IAB A;  3CB0 A;  3BNK A;  2ED4 A;  2IG6 A;  2OU5 A;  2ASF A;  1USC A;  2HQ7 A;  3PFT A;  1CI0 A;  3FGE A;  3FKH A;  3U34 A;  4YWN A;  1VL7 A;  3AWH A;  3VY2 A;  2D38 A;  1I0R A;  2RDE A;  4L82 A;  2R0X A;  4HMT A;  2D36 A;  3ZOG A;  2E83 A;  2HQ9 A;  2ECU A;  1XHN A;  3KYG A;  3R5L A;  1W3R A;  3NFW A;  1DNL A;  3ZOE A;  1I0S A;  3R5Y A;  2PTF A;  1USF A;  2OL5 A;  3K87 A;  3R5P A;  1WGB A;  5BNC A;  3SWJ A;  1TY9 A;  2FHQ A;  3U0I A;  5ESC A;  4Y9I A;  2VPA A;  2HTD A;  2ARZ A;  3TGV A;  2R6V A;  1YLN A;  1W3O A;  3DNH A;  3KYF A;  1WV4 A;  3U35 A;  3CP3 A;  3R5Z A;  1AXJ A;  1EJE A;  4HMU A;  3E4V A;  3R5W A;  1W3Q A;  4HMS A;  1RFE A;  4XJ2 A;  4YBN A;  3ZOH A;  3HY8 A;  1G78 A;  1WLI A;  3VYA A;  1T9M A;  2NR4 A;  2X1K A;  3A20 A;  4R82 A;  3K86 A;  4XHY A;  3ZOD A;  3F7E A;  1NRG A;  3B5M A;  3EC6 A;  4Z85 A;  3VY5 A;  3AMF A;  4F07 A;  2RE7 A;  3H96 A;  2FG9 A;  4HMW A;  2GJG A;  4HX6 A;  3DMB A;  4HMV A;  2HHZ A;  2FUR A;  1G79 A;  2AQ6 A;  3K88 A;  2QCK A;  3RH7 A;  3HMZ A;  1W9A A;  4IRA A;  2Q9K A;  2I51 A;  3R5R A;  2X1J A;  3IN6 A;  3A6Q A;  1RZ0 A;  3DB0 A;  2D37 A;  3A6R A;  4N7R C;  2A2J A;  5JAB A; 
#chains in the Genus database with same CATH topology
 1W3P A;  4ZKY A;  1YOA A;  4HMX A;  5CHE C;  3BPK A;  2I02 A;  3EAA A;  4QVB A;  3BA3 A;  1JNW A;  1WLK A;  2D5M A;  2ECR A;  1Y30 A;  3U5W A;  2IML A;  3ZOF A;  1FLM A;  1G77 A;  5CHO A;  2QEA A;  1RZ1 A;  3ZOC A;  2K4Q A;  1G76 A;  1XXO A;  3GAS A;  2HTI A;  2IAB A;  3CB0 A;  4W64 A;  3BNK A;  2ED4 A;  2IG6 A;  2OU5 A;  2ASF A;  1USC A;  2HQ7 A;  3PFT A;  1CI0 A;  3FGE A;  3FKH A;  3U34 A;  4YWN A;  1VL7 A;  3AWH A;  3VY2 A;  2D38 A;  1I0R A;  2RDE A;  4L82 A;  2R0X A;  4HMT A;  2D36 A;  3ZOG A;  2E83 A;  2HQ9 A;  2ECU A;  1XHN A;  3KYG A;  3R5L A;  1W3R A;  3NFW A;  1DNL A;  3ZOE A;  1I0S A;  3R5Y A;  2PTF A;  1USF A;  2OL5 A;  3K87 A;  3R5P A;  1WGB A;  5BNC A;  3SWJ A;  1TY9 A;  2FHQ A;  3U0I A;  5ESC A;  4Y9I A;  2VPA A;  2HTD A;  2ARZ A;  3TGV A;  3V4H A;  2R6V A;  1YLN A;  1W3O A;  3DNH A;  3KYF A;  1WV4 A;  3U35 A;  3CP3 A;  4MTK A;  3R5Z A;  3HE1 A;  1AXJ A;  1EJE A;  4HMU A;  3E4V A;  3R5W A;  1W3Q A;  4HMS A;  1RFE A;  4XJ2 A;  4YBN A;  3ZOH A;  3HY8 A;  1G78 A;  1WLI A;  3VYA A;  1T9M A;  2NR4 A;  2X1K A;  3A20 A;  4R82 A;  3K86 A;  4XHY A;  3ZOD A;  3F7E A;  4TV4 A;  1NRG A;  3B5M A;  3EC6 A;  4Z85 A;  3VY5 A;  3AMF A;  4HKH A;  4F07 A;  2RE7 A;  3H96 A;  2FG9 A;  4HMW A;  2GJG A;  4HX6 A;  2P5Z X;  3DMB A;  4HMV A;  2HHZ A;  2FUR A;  1G79 A;  2AQ6 A;  3K88 A;  2QCK A;  2L1T A;  3RH7 A;  3HMZ A;  1W9A A;  4IRA A;  4UHV A;  2Q9K A;  2I51 A;  2GUJ A;  3R5R A;  1Y12 A;  2X1J A;  3IN6 A;  3A6Q A;  1RZ0 A;  3DB0 A;  2D37 A;  3A6R A;  4N7R C;  2A2J A;  5JAB A; 
#chains in the Genus database with same CATH homology
 1W3P A;  4ZKY A;  1YOA A;  4HMX A;  5CHE C;  3BPK A;  2I02 A;  4QVB A;  3BA3 A;  1JNW A;  1WLK A;  2D5M A;  2ECR A;  1Y30 A;  3U5W A;  2IML A;  3ZOF A;  1FLM A;  1G77 A;  5CHO A;  2QEA A;  1RZ1 A;  3ZOC A;  3GAS A;  1G76 A;  1XXO A;  2HTI A;  2IAB A;  3CB0 A;  3BNK A;  2ED4 A;  2IG6 A;  2OU5 A;  2ASF A;  1USC A;  2HQ7 A;  3PFT A;  1CI0 A;  3FGE A;  3FKH A;  3U34 A;  4YWN A;  1VL7 A;  3AWH A;  3VY2 A;  2D38 A;  1I0R A;  2RDE A;  4L82 A;  2R0X A;  4HMT A;  2D36 A;  3ZOG A;  2E83 A;  2HQ9 A;  2ECU A;  1XHN A;  3KYG A;  3R5L A;  1W3R A;  3NFW A;  1DNL A;  3ZOE A;  1I0S A;  3R5Y A;  2PTF A;  1USF A;  2OL5 A;  3K87 A;  3R5P A;  1WGB A;  5BNC A;  3SWJ A;  1TY9 A;  2FHQ A;  3U0I A;  5ESC A;  4Y9I A;  2VPA A;  2HTD A;  2ARZ A;  3TGV A;  2R6V A;  1YLN A;  1W3O A;  3DNH A;  3KYF A;  1WV4 A;  3U35 A;  3CP3 A;  3R5Z A;  1AXJ A;  1EJE A;  4HMU A;  3E4V A;  3R5W A;  1W3Q A;  4HMS A;  1RFE A;  4XJ2 A;  4YBN A;  3ZOH A;  3HY8 A;  1G78 A;  1WLI A;  3VYA A;  1T9M A;  2NR4 A;  2X1K A;  3A20 A;  4R82 A;  3K86 A;  4XHY A;  3ZOD A;  3F7E A;  1NRG A;  3B5M A;  3EC6 A;  4Z85 A;  3VY5 A;  3AMF A;  4F07 A;  2RE7 A;  3H96 A;  2FG9 A;  4HMW A;  2GJG A;  4HX6 A;  3DMB A;  4HMV A;  2HHZ A;  2FUR A;  1G79 A;  2AQ6 A;  3K88 A;  2QCK A;  3RH7 A;  3HMZ A;  1W9A A;  4IRA A;  2Q9K A;  2I51 A;  3R5R A;  2X1J A;  3IN6 A;  3A6Q A;  1RZ0 A;  3DB0 A;  2D37 A;  3A6R A;  4N7R C;  2A2J A;  5JAB A; 
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