1CI0A

Pnp oxidase from saccharomyces cerevisiae
Total Genus 59

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
205
structure length
205
Chain Sequence
FTLNEKQLTDDPIDLFTKWFNEAKEDPRETLPEAITFSSAELPSGRVSSRILLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRRKTENDPWKVVRLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI5 (202-205)TIV5 (91-94)3H1 (28-30)TIV4 (90-93)TVIII1 (32-35)S3 (85-90)TIV1 (52-55)AH1 (35-48)TI3 (81-84)S1 (57-64)TI2 (54-57)3H2 (113-115)O1 (103-105)S6 (186-200)AH3 (130-139)TIV2 (64-67)AH5 (160-174)TIV3 (65-68)S2 (69-80)TIV6 (174-177)TIV7 (177-180)AH2 (95-102)S5 (117-127)AH4 (142-150)TII1 (152-155)TI4 (183-186)S4 (105-112)TI1 (49-52)Updating...
connected with : NaN
publication title The Structure of PNP Oxidase from S. Cerevisiae
rcsb
molecule keywords PROTEIN (PNP OXIDASE)
molecule tags Oxidoreductase
source organism Saccharomyces cerevisiae
total genus 59
structure length 205
sequence length 205
chains with identical sequence B
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 1999-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1ci0A00
3R5YA 5CHOA 3SWJA 2D38A 1G77A 1WLIA 2FHQA 3R5WA 3ZOFA 2RDEA 3AMFA 2HTDA 3VY2A 1W3QA 1I0SA 3NFWA 1YLNA 3TGVA 1VL7A 2RE7A 3DMBA 1USFA 2HHZA 3HY8A 1W3RA 2HTIA 1DNLA 4F07A 3CB0A 3U35A 1WGBA 2FURA 3R5LA 4HMSA 1Y30A 2ASFA 2D37A 1WLKA 1WV4A 2X1KA 3ZOGA 2HQ7A 3K86A 2R6VA 2IMLA 4XHYA 1RZ0A 2ARZA 3A6QA 4HMWA 3H96A 1RZ1A 3BNKA 2Q9KA 3FGEA 3KYGA 1G78A 4YWNA 1XXOA 3PFTA 3B5MA 2I02A 1G79A 3CP3A 5JABA 2QCKA 1EJEA 4QVBA 3AWHA 3ZOCA 4HMTA 3VYAA 4ZKYA 2ECRA 2ECUA 2OU5A 3R5ZA 2I51A 3R5RA 2FG9A 3U5WA 2GJGA 3KYFA 1G76A 4HX6A 1W9AA 2HQ9A 3FKHA 4Y9IA 2IABA 2R0XA 4XJ2A 5CHEC 1FLMA 4HMUA 4R82A 4N7RC 3ZODA 3IN6A 5ESCA 5BNCA 3ZOHA 3E4VA 3U0IA 1JNWA 3ZOEA 1I0RA 3DNHA 4L82A 1W3OA 3VY5A 2ED4A 3BPKA 3K87A 1YOAA 3RH7A 1XHNA 2QEAA 4HMVA 3BA3A 4HMXA 2VPAA 2X1JA 1CI0A 2NR4A 2A2JA 1NRGA 3DB0A 2AQ6A 1W3PA 3R5PA 1RFEA 1T9MA 1TY9A 1AXJA 3F7EA 4Z85A 2IG6A 1USCA 2D5MA 2E83A 3U34A 2OL5A 3A20A 2D36A 4YBNA 3HMZA 4IRAA 3A6RA 2PTFA 3K88A 3GASA 3EC6A
chains in the Genus database with same CATH superfamily
3R5YA 1Y12A 5CHOA 2K4QA 3SWJA 2D38A 1G77A 1WLIA 2FHQA 3R5WA 3ZOFA 2RDEA 3AMFA 2HTDA 3VY2A 1W3QA 1I0SA 3NFWA 1YLNA 3TGVA 1VL7A 2RE7A 3V4HA 3DMBA 1USFA 2HHZA 3HY8A 4HKHA 1W3RA 3HE1A 2HTIA 1DNLA 4F07A 3CB0A 3U35A 1WGBA 4W64A 2FURA 3R5LA 4HMSA 1Y30A 2ASFA 4UHVA 2D37A 1WLKA 1WV4A 2X1KA 3ZOGA 2HQ7A 3K86A 2R6VA 2IMLA 3EAAA 4XHYA 1RZ0A 2P5ZX 2ARZA 3A6QA 4HMWA 3H96A 1RZ1A 3BNKA 2Q9KA 3FGEA 3KYGA 1G78A 4YWNA 1XXOA 3PFTA 3B5MA 2I02A 1G79A 3CP3A 5JABA 2QCKA 1EJEA 4QVBA 3AWHA 3ZOCA 4HMTA 3VYAA 4ZKYA 2ECRA 2ECUA 2OU5A 3R5ZA 2I51A 3R5RA 2FG9A 3U5WA 2GJGA 3KYFA 1G76A 4HX6A 1W9AA 2HQ9A 3FKHA 4Y9IA 2IABA 2R0XA 4XJ2A 5CHEC 1FLMA 4HMUA 4R82A 4N7RC 4TV4A 3ZODA 3IN6A 5ESCA 5BNCA 3ZOHA 3E4VA 3U0IA 1JNWA 3ZOEA 4MTKA 1I0RA 3DNHA 4L82A 1W3OA 3VY5A 2ED4A 3BPKA 3K87A 1YOAA 3RH7A 1XHNA 2L1TA 2QEAA 4HMVA 3BA3A 4HMXA 2VPAA 2X1JA 1CI0A 2NR4A 2A2JA 1NRGA 3DB0A 2AQ6A 1W3PA 3R5PA 1RFEA 1T9MA 1TY9A 1AXJA 3F7EA 4Z85A 2IG6A 1USCA 2D5MA 2E83A 2GUJA 2OL5A 3A20A 3U34A 2D36A 4YBNA 3HMZA 4IRAA 3A6RA 2PTFA 3K88A 3GASA 3EC6A
chains in the Genus database with same CATH topology
3R5YA 5CHOA 3SWJA 2D38A 1G77A 1WLIA 2FHQA 3R5WA 3ZOFA 2RDEA 3AMFA 2HTDA 3VY2A 1W3QA 1I0SA 3NFWA 1YLNA 3TGVA 1VL7A 2RE7A 3DMBA 1USFA 2HHZA 3HY8A 1W3RA 2HTIA 1DNLA 4F07A 3CB0A 3U35A 1WGBA 2FURA 3R5LA 4HMSA 1Y30A 2ASFA 2D37A 1WLKA 1WV4A 2X1KA 3ZOGA 2HQ7A 3K86A 2R6VA 2IMLA 4XHYA 1RZ0A 2ARZA 3A6QA 4HMWA 3H96A 1RZ1A 3BNKA 2Q9KA 3FGEA 3KYGA 1G78A 4YWNA 1XXOA 3PFTA 3B5MA 2I02A 1G79A 3CP3A 5JABA 2QCKA 1EJEA 4QVBA 3AWHA 3ZOCA 4HMTA 3VYAA 4ZKYA 2ECRA 2ECUA 2OU5A 3R5ZA 2I51A 3R5RA 2FG9A 3U5WA 2GJGA 3KYFA 1G76A 4HX6A 1W9AA 2HQ9A 3FKHA 4Y9IA 2IABA 2R0XA 4XJ2A 5CHEC 1FLMA 4HMUA 4R82A 4N7RC 3ZODA 3IN6A 5ESCA 5BNCA 3ZOHA 3E4VA 3U0IA 1JNWA 3ZOEA 1I0RA 3DNHA 4L82A 1W3OA 3VY5A 2ED4A 3BPKA 3K87A 1YOAA 3RH7A 1XHNA 2QEAA 4HMVA 3BA3A 4HMXA 2VPAA 2X1JA 1CI0A 2NR4A 2A2JA 1NRGA 3DB0A 2AQ6A 1W3PA 3R5PA 1RFEA 1T9MA 1TY9A 1AXJA 3F7EA 4Z85A 2IG6A 1USCA 2D5MA 2E83A 3U34A 2OL5A 3A20A 2D36A 4YBNA 3HMZA 4IRAA 3A6RA 2PTFA 3K88A 3GASA 3EC6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R5Y A;  5CHO A;  3SWJ A;  2D38 A;  1G77 A;  1WLI A;  2FHQ A;  3R5W A;  3ZOF A;  2RDE A;  3AMF A;  2HTD A;  3VY2 A;  1W3Q A;  1I0S A;  3NFW A;  1YLN A;  3TGV A;  1VL7 A;  2RE7 A;  3DMB A;  1USF A;  2HHZ A;  3HY8 A;  1W3R A;  2HTI A;  1DNL A;  4F07 A;  3CB0 A;  3U35 A;  1WGB A;  2FUR A;  3R5L A;  4HMS A;  1Y30 A;  2ASF A;  2D37 A;  1WLK A;  1WV4 A;  2X1K A;  3ZOG A;  2HQ7 A;  3K86 A;  2R6V A;  2IML A;  4XHY A;  1RZ0 A;  2ARZ A;  3A6Q A;  4HMW A;  3H96 A;  1RZ1 A;  3BNK A;  2Q9K A;  3FGE A;  3KYG A;  1G78 A;  4YWN A;  1XXO A;  3PFT A;  3B5M A;  2I02 A;  1G79 A;  3CP3 A;  5JAB A;  2QCK A;  1EJE A;  4QVB A;  3AWH A;  3ZOC A;  4HMT A;  3VYA A;  4ZKY A;  2ECR A;  2ECU A;  2OU5 A;  3R5Z A;  2I51 A;  3R5R A;  2FG9 A;  3U5W A;  2GJG A;  3KYF A;  1G76 A;  4HX6 A;  1W9A A;  2HQ9 A;  3FKH A;  4Y9I A;  2IAB A;  2R0X A;  4XJ2 A;  5CHE C;  1FLM A;  4HMU A;  4R82 A;  4N7R C;  3ZOD A;  3IN6 A;  5ESC A;  5BNC A;  3ZOH A;  3E4V A;  3U0I A;  1JNW A;  3ZOE A;  1I0R A;  3DNH A;  4L82 A;  1W3O A;  3VY5 A;  2ED4 A;  3BPK A;  3K87 A;  1YOA A;  3RH7 A;  1XHN A;  2QEA A;  4HMV A;  3BA3 A;  4HMX A;  2VPA A;  2X1J A;  1CI0 A;  2NR4 A;  2A2J A;  1NRG A;  3DB0 A;  2AQ6 A;  1W3P A;  3R5P A;  1RFE A;  1T9M A;  1TY9 A;  1AXJ A;  3F7E A;  4Z85 A;  2IG6 A;  1USC A;  2D5M A;  2E83 A;  3U34 A;  2OL5 A;  3A20 A;  2D36 A;  4YBN A;  3HMZ A;  4IRA A;  3A6R A;  2PTF A;  3K88 A;  3GAS A;  3EC6 A; 
#chains in the Genus database with same CATH topology
 3R5Y A;  1Y12 A;  5CHO A;  2K4Q A;  3SWJ A;  2D38 A;  1G77 A;  1WLI A;  2FHQ A;  3R5W A;  3ZOF A;  2RDE A;  3AMF A;  2HTD A;  3VY2 A;  1W3Q A;  1I0S A;  3NFW A;  1YLN A;  3TGV A;  1VL7 A;  2RE7 A;  3V4H A;  3DMB A;  1USF A;  2HHZ A;  3HY8 A;  4HKH A;  1W3R A;  3HE1 A;  2HTI A;  1DNL A;  4F07 A;  3CB0 A;  3U35 A;  1WGB A;  4W64 A;  2FUR A;  3R5L A;  4HMS A;  1Y30 A;  2ASF A;  4UHV A;  2D37 A;  1WLK A;  1WV4 A;  2X1K A;  3ZOG A;  2HQ7 A;  3K86 A;  2R6V A;  2IML A;  3EAA A;  4XHY A;  1RZ0 A;  2P5Z X;  2ARZ A;  3A6Q A;  4HMW A;  3H96 A;  1RZ1 A;  3BNK A;  2Q9K A;  3FGE A;  3KYG A;  1G78 A;  4YWN A;  1XXO A;  3PFT A;  3B5M A;  2I02 A;  1G79 A;  3CP3 A;  5JAB A;  2QCK A;  1EJE A;  4QVB A;  3AWH A;  3ZOC A;  4HMT A;  3VYA A;  4ZKY A;  2ECR A;  2ECU A;  2OU5 A;  3R5Z A;  2I51 A;  3R5R A;  2FG9 A;  3U5W A;  2GJG A;  3KYF A;  1G76 A;  4HX6 A;  1W9A A;  2HQ9 A;  3FKH A;  4Y9I A;  2IAB A;  2R0X A;  4XJ2 A;  5CHE C;  1FLM A;  4HMU A;  4R82 A;  4N7R C;  4TV4 A;  3ZOD A;  3IN6 A;  5ESC A;  5BNC A;  3ZOH A;  3E4V A;  3U0I A;  1JNW A;  3ZOE A;  4MTK A;  1I0R A;  3DNH A;  4L82 A;  1W3O A;  3VY5 A;  2ED4 A;  3BPK A;  3K87 A;  1YOA A;  3RH7 A;  1XHN A;  2L1T A;  2QEA A;  4HMV A;  3BA3 A;  4HMX A;  2VPA A;  2X1J A;  1CI0 A;  2NR4 A;  2A2J A;  1NRG A;  3DB0 A;  2AQ6 A;  1W3P A;  3R5P A;  1RFE A;  1T9M A;  1TY9 A;  1AXJ A;  3F7E A;  4Z85 A;  2IG6 A;  1USC A;  2D5M A;  2E83 A;  2GUJ A;  2OL5 A;  3A20 A;  3U34 A;  2D36 A;  4YBN A;  3HMZ A;  4IRA A;  3A6R A;  2PTF A;  3K88 A;  3GAS A;  3EC6 A; 
#chains in the Genus database with same CATH homology
 3R5Y A;  5CHO A;  3SWJ A;  2D38 A;  1G77 A;  1WLI A;  2FHQ A;  3R5W A;  3ZOF A;  2RDE A;  3AMF A;  2HTD A;  3VY2 A;  1W3Q A;  1I0S A;  3NFW A;  1YLN A;  3TGV A;  1VL7 A;  2RE7 A;  3DMB A;  1USF A;  2HHZ A;  3HY8 A;  1W3R A;  2HTI A;  1DNL A;  4F07 A;  3CB0 A;  3U35 A;  1WGB A;  2FUR A;  3R5L A;  4HMS A;  1Y30 A;  2ASF A;  2D37 A;  1WLK A;  1WV4 A;  2X1K A;  3ZOG A;  2HQ7 A;  3K86 A;  2R6V A;  2IML A;  4XHY A;  1RZ0 A;  2ARZ A;  3A6Q A;  4HMW A;  3H96 A;  1RZ1 A;  3BNK A;  2Q9K A;  3FGE A;  3KYG A;  1G78 A;  4YWN A;  1XXO A;  3PFT A;  3B5M A;  2I02 A;  1G79 A;  3CP3 A;  5JAB A;  2QCK A;  1EJE A;  4QVB A;  3AWH A;  3ZOC A;  4HMT A;  3VYA A;  4ZKY A;  2ECR A;  2ECU A;  2OU5 A;  3R5Z A;  2I51 A;  3R5R A;  2FG9 A;  3U5W A;  2GJG A;  3KYF A;  1G76 A;  4HX6 A;  1W9A A;  2HQ9 A;  3FKH A;  4Y9I A;  2IAB A;  2R0X A;  4XJ2 A;  5CHE C;  1FLM A;  4HMU A;  4R82 A;  4N7R C;  3ZOD A;  3IN6 A;  5ESC A;  5BNC A;  3ZOH A;  3E4V A;  3U0I A;  1JNW A;  3ZOE A;  1I0R A;  3DNH A;  4L82 A;  1W3O A;  3VY5 A;  2ED4 A;  3BPK A;  3K87 A;  1YOA A;  3RH7 A;  1XHN A;  2QEA A;  4HMV A;  3BA3 A;  4HMX A;  2VPA A;  2X1J A;  1CI0 A;  2NR4 A;  2A2J A;  1NRG A;  3DB0 A;  2AQ6 A;  1W3P A;  3R5P A;  1RFE A;  1T9M A;  1TY9 A;  1AXJ A;  3F7E A;  4Z85 A;  2IG6 A;  1USC A;  2D5M A;  2E83 A;  3U34 A;  2OL5 A;  3A20 A;  2D36 A;  4YBN A;  3HMZ A;  4IRA A;  3A6R A;  2PTF A;  3K88 A;  3GAS A;  3EC6 A; 
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