1DNLA

X-ray structure of escherichia coli pyridoxine 5'-phosphate oxidase complexed with fmn at 1.8 angstrom resolution
Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
199
structure length
199
Chain Sequence
GGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI7 (175-178)TVIII1 (28-31)AH1 (31-45)TI1 (49-52)TIV1 (47-50)TI2 (59-62)TIV2 (122-125)AH4 (153-167)S2 (64-67)TI3 (75-78)AH2 (88-95)S3 (81-84)TI4 (84-87)3H2 (106-108)S5 (110-120)3H3 (126-129)TI5 (129-132)TI6 (130-133)AH3 (135-143)TII1 (145-148)TI'1 (167-170)TIV4 (169-172)S7 (187-192)S1 (54-58)S4 (98-105)S6 (178-183)3H1 (24-26)Updating...
connected with : NaN
publication title X-ray structure of Escherichia coli pyridoxine 5'-phosphate oxidase complexed with FMN at 1.8 A resolution.
pubmed doi rcsb
molecule keywords PYRIDOXINE 5'-PHOSPHATE OXIDASE
molecule tags Oxidoreductase
source organism Escherichia coli k12
total genus 44
structure length 199
sequence length 199
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 1999-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1dnlA00
2X1JA 1XHNA 4HMSA 3K86A 1FLMA 3U5WA 1G79A 2AQ6A 4N7RC 3A6RA 3BPKA 2D38A 2GJGA 3A20A 3CB0A 1G77A 1WV4A 1W3OA 2D37A 2ARZA 3AMFA 4Y9IA 1G76A 3RH7A 3SWJA 3EC6A 3ZOCA 4QVBA 3R5RA 3KYGA 1DNLA 3IN6A 3B5MA 4F07A 2IABA 1W9AA 4HMWA 2HTDA 3ZOGA 1YLNA 1I0SA 1RZ0A 3BA3A 2Q9KA 3R5YA 4Z85A 3BNKA 4HMXA 2FURA 2OU5A 2HTIA 2IG6A 1CI0A 1RFEA 1W3PA 3R5WA 2PTFA 4HMTA 4XJ2A 2R0XA 3KYFA 4HMVA 3AWHA 4ZKYA 3PFTA 2HQ7A 2D36A 2HHZA 3ZOEA 3HY8A 3CP3A 3K87A 1Y30A 1EJEA 2VPAA 4YWNA 2RE7A 3VY5A 3NFWA 1USCA 2X1KA 1AXJA 1W3RA 2A2JA 3VYAA 2RDEA 3F7EA 1I0RA 3VY2A 5BNCA 1WGBA 4IRAA 3K88A 2NR4A 3DNHA 2OL5A 1WLKA 5ESCA 2ASFA 3FGEA 2ED4A 3A6QA 1YOAA 2ECRA 3DB0A 3HMZA 2QCKA 2I51A 3ZOHA 3DMBA 2QEAA 1T9MA 2D5MA 2FHQA 4R82A 1JNWA 1W3QA 1G78A 2HQ9A 3E4VA 2ECUA 2FG9A 1VL7A 3TGVA 3ZOFA 2IMLA 1TY9A 4HMUA 5JABA 3U34A 1USFA 1XXOA 2I02A 3U0IA 3U35A 5CHOA 1WLIA 2E83A 5CHEC 1RZ1A 3R5LA 4L82A 2R6VA 3R5PA 4YBNA 4XHYA 4HX6A 3GASA 3FKHA 3H96A 3R5ZA 3ZODA 1NRGA
chains in the Genus database with same CATH superfamily
4HKHA 2X1JA 1XHNA 4HMSA 3K86A 1FLMA 3U5WA 1G79A 2AQ6A 4N7RC 3A6RA 3BPKA 2D38A 2GJGA 3A20A 3CB0A 1G77A 1WV4A 1W3OA 2D37A 2ARZA 3AMFA 4Y9IA 3HE1A 1G76A 3RH7A 3SWJA 3EC6A 3ZOCA 4QVBA 3R5RA 3KYGA 1DNLA 3IN6A 3B5MA 4F07A 2IABA 1W9AA 4HMWA 2HTDA 3ZOGA 1YLNA 1I0SA 4UHVA 1RZ0A 3BA3A 2Q9KA 3R5YA 4Z85A 3BNKA 4HMXA 2FURA 2OU5A 2HTIA 2IG6A 1CI0A 1RFEA 1W3PA 3R5WA 2PTFA 4HMTA 4XJ2A 2R0XA 3KYFA 4HMVA 3AWHA 4ZKYA 3PFTA 2HQ7A 2D36A 2HHZA 3ZOEA 3HY8A 3CP3A 3K87A 1Y30A 1EJEA 2VPAA 2K4QA 4YWNA 2RE7A 3VY5A 3NFWA 1USCA 2X1KA 1AXJA 4TV4A 1W3RA 2A2JA 3VYAA 2RDEA 3F7EA 1I0RA 3VY2A 5BNCA 1WGBA 4IRAA 3K88A 2NR4A 3DNHA 3V4HA 2OL5A 1WLKA 5ESCA 2ASFA 3FGEA 2ED4A 3A6QA 1YOAA 2ECRA 3DB0A 2GUJA 3HMZA 2QCKA 2I51A 2L1TA 3ZOHA 3DMBA 2QEAA 4MTKA 1Y12A 1T9MA 2D5MA 2FHQA 4R82A 1JNWA 1W3QA 1G78A 2HQ9A 3E4VA 2ECUA 2FG9A 1VL7A 3TGVA 3ZOFA 2IMLA 1TY9A 4HMUA 5JABA 3U34A 1USFA 1XXOA 2I02A 3U0IA 3U35A 5CHOA 1WLIA 2E83A 5CHEC 1RZ1A 2P5ZX 3EAAA 3R5LA 4L82A 2R6VA 3R5PA 4YBNA 4XHYA 4HX6A 4W64A 3GASA 3FKHA 3H96A 3R5ZA 3ZODA 1NRGA
chains in the Genus database with same CATH topology
2X1JA 1XHNA 4HMSA 3K86A 1FLMA 3U5WA 1G79A 2AQ6A 4N7RC 3A6RA 3BPKA 2D38A 2GJGA 3A20A 3CB0A 1G77A 1WV4A 1W3OA 2D37A 2ARZA 3AMFA 4Y9IA 1G76A 3RH7A 3SWJA 3EC6A 3ZOCA 4QVBA 3R5RA 3KYGA 1DNLA 3IN6A 3B5MA 4F07A 2IABA 1W9AA 4HMWA 2HTDA 3ZOGA 1YLNA 1I0SA 1RZ0A 3BA3A 2Q9KA 3R5YA 4Z85A 3BNKA 4HMXA 2FURA 2OU5A 2HTIA 2IG6A 1CI0A 1RFEA 1W3PA 3R5WA 2PTFA 4HMTA 4XJ2A 2R0XA 3KYFA 4HMVA 3AWHA 4ZKYA 3PFTA 2HQ7A 2D36A 2HHZA 3ZOEA 3HY8A 3CP3A 3K87A 1Y30A 1EJEA 2VPAA 4YWNA 2RE7A 3VY5A 3NFWA 1USCA 2X1KA 1AXJA 1W3RA 2A2JA 3VYAA 2RDEA 3F7EA 1I0RA 3VY2A 5BNCA 1WGBA 4IRAA 3K88A 2NR4A 3DNHA 2OL5A 1WLKA 5ESCA 2ASFA 3FGEA 2ED4A 3A6QA 1YOAA 2ECRA 3DB0A 3HMZA 2QCKA 2I51A 3ZOHA 3DMBA 2QEAA 1T9MA 2D5MA 2FHQA 4R82A 1JNWA 1W3QA 1G78A 2HQ9A 3E4VA 2ECUA 2FG9A 1VL7A 3TGVA 3ZOFA 2IMLA 1TY9A 4HMUA 5JABA 3U34A 1USFA 1XXOA 2I02A 3U0IA 3U35A 5CHOA 1WLIA 2E83A 5CHEC 1RZ1A 3R5LA 4L82A 2R6VA 3R5PA 4YBNA 4XHYA 4HX6A 3GASA 3FKHA 3H96A 3R5ZA 3ZODA 1NRGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X1J A;  1XHN A;  4HMS A;  3K86 A;  1FLM A;  3U5W A;  1G79 A;  2AQ6 A;  4N7R C;  3A6R A;  3BPK A;  2D38 A;  2GJG A;  3A20 A;  3CB0 A;  1G77 A;  1WV4 A;  1W3O A;  2D37 A;  2ARZ A;  3AMF A;  4Y9I A;  1G76 A;  3RH7 A;  3SWJ A;  3EC6 A;  3ZOC A;  4QVB A;  3R5R A;  3KYG A;  1DNL A;  3IN6 A;  3B5M A;  4F07 A;  2IAB A;  1W9A A;  4HMW A;  2HTD A;  3ZOG A;  1YLN A;  1I0S A;  1RZ0 A;  3BA3 A;  2Q9K A;  3R5Y A;  4Z85 A;  3BNK A;  4HMX A;  2FUR A;  2OU5 A;  2HTI A;  2IG6 A;  1CI0 A;  1RFE A;  1W3P A;  3R5W A;  2PTF A;  4HMT A;  4XJ2 A;  2R0X A;  3KYF A;  4HMV A;  3AWH A;  4ZKY A;  3PFT A;  2HQ7 A;  2D36 A;  2HHZ A;  3ZOE A;  3HY8 A;  3CP3 A;  3K87 A;  1Y30 A;  1EJE A;  2VPA A;  4YWN A;  2RE7 A;  3VY5 A;  3NFW A;  1USC A;  2X1K A;  1AXJ A;  1W3R A;  2A2J A;  3VYA A;  2RDE A;  3F7E A;  1I0R A;  3VY2 A;  5BNC A;  1WGB A;  4IRA A;  3K88 A;  2NR4 A;  3DNH A;  2OL5 A;  1WLK A;  5ESC A;  2ASF A;  3FGE A;  2ED4 A;  3A6Q A;  1YOA A;  2ECR A;  3DB0 A;  3HMZ A;  2QCK A;  2I51 A;  3ZOH A;  3DMB A;  2QEA A;  1T9M A;  2D5M A;  2FHQ A;  4R82 A;  1JNW A;  1W3Q A;  1G78 A;  2HQ9 A;  3E4V A;  2ECU A;  2FG9 A;  1VL7 A;  3TGV A;  3ZOF A;  2IML A;  1TY9 A;  4HMU A;  5JAB A;  3U34 A;  1USF A;  1XXO A;  2I02 A;  3U0I A;  3U35 A;  5CHO A;  1WLI A;  2E83 A;  5CHE C;  1RZ1 A;  3R5L A;  4L82 A;  2R6V A;  3R5P A;  4YBN A;  4XHY A;  4HX6 A;  3GAS A;  3FKH A;  3H96 A;  3R5Z A;  3ZOD A;  1NRG A; 
#chains in the Genus database with same CATH topology
 4HKH A;  2X1J A;  1XHN A;  4HMS A;  3K86 A;  1FLM A;  3U5W A;  1G79 A;  2AQ6 A;  4N7R C;  3A6R A;  3BPK A;  2D38 A;  2GJG A;  3A20 A;  3CB0 A;  1G77 A;  1WV4 A;  1W3O A;  2D37 A;  2ARZ A;  3AMF A;  4Y9I A;  3HE1 A;  1G76 A;  3RH7 A;  3SWJ A;  3EC6 A;  3ZOC A;  4QVB A;  3R5R A;  3KYG A;  1DNL A;  3IN6 A;  3B5M A;  4F07 A;  2IAB A;  1W9A A;  4HMW A;  2HTD A;  3ZOG A;  1YLN A;  1I0S A;  4UHV A;  1RZ0 A;  3BA3 A;  2Q9K A;  3R5Y A;  4Z85 A;  3BNK A;  4HMX A;  2FUR A;  2OU5 A;  2HTI A;  2IG6 A;  1CI0 A;  1RFE A;  1W3P A;  3R5W A;  2PTF A;  4HMT A;  4XJ2 A;  2R0X A;  3KYF A;  4HMV A;  3AWH A;  4ZKY A;  3PFT A;  2HQ7 A;  2D36 A;  2HHZ A;  3ZOE A;  3HY8 A;  3CP3 A;  3K87 A;  1Y30 A;  1EJE A;  2VPA A;  2K4Q A;  4YWN A;  2RE7 A;  3VY5 A;  3NFW A;  1USC A;  2X1K A;  1AXJ A;  4TV4 A;  1W3R A;  2A2J A;  3VYA A;  2RDE A;  3F7E A;  1I0R A;  3VY2 A;  5BNC A;  1WGB A;  4IRA A;  3K88 A;  2NR4 A;  3DNH A;  3V4H A;  2OL5 A;  1WLK A;  5ESC A;  2ASF A;  3FGE A;  2ED4 A;  3A6Q A;  1YOA A;  2ECR A;  3DB0 A;  2GUJ A;  3HMZ A;  2QCK A;  2I51 A;  2L1T A;  3ZOH A;  3DMB A;  2QEA A;  4MTK A;  1Y12 A;  1T9M A;  2D5M A;  2FHQ A;  4R82 A;  1JNW A;  1W3Q A;  1G78 A;  2HQ9 A;  3E4V A;  2ECU A;  2FG9 A;  1VL7 A;  3TGV A;  3ZOF A;  2IML A;  1TY9 A;  4HMU A;  5JAB A;  3U34 A;  1USF A;  1XXO A;  2I02 A;  3U0I A;  3U35 A;  5CHO A;  1WLI A;  2E83 A;  5CHE C;  1RZ1 A;  2P5Z X;  3EAA A;  3R5L A;  4L82 A;  2R6V A;  3R5P A;  4YBN A;  4XHY A;  4HX6 A;  4W64 A;  3GAS A;  3FKH A;  3H96 A;  3R5Z A;  3ZOD A;  1NRG A; 
#chains in the Genus database with same CATH homology
 2X1J A;  1XHN A;  4HMS A;  3K86 A;  1FLM A;  3U5W A;  1G79 A;  2AQ6 A;  4N7R C;  3A6R A;  3BPK A;  2D38 A;  2GJG A;  3A20 A;  3CB0 A;  1G77 A;  1WV4 A;  1W3O A;  2D37 A;  2ARZ A;  3AMF A;  4Y9I A;  1G76 A;  3RH7 A;  3SWJ A;  3EC6 A;  3ZOC A;  4QVB A;  3R5R A;  3KYG A;  1DNL A;  3IN6 A;  3B5M A;  4F07 A;  2IAB A;  1W9A A;  4HMW A;  2HTD A;  3ZOG A;  1YLN A;  1I0S A;  1RZ0 A;  3BA3 A;  2Q9K A;  3R5Y A;  4Z85 A;  3BNK A;  4HMX A;  2FUR A;  2OU5 A;  2HTI A;  2IG6 A;  1CI0 A;  1RFE A;  1W3P A;  3R5W A;  2PTF A;  4HMT A;  4XJ2 A;  2R0X A;  3KYF A;  4HMV A;  3AWH A;  4ZKY A;  3PFT A;  2HQ7 A;  2D36 A;  2HHZ A;  3ZOE A;  3HY8 A;  3CP3 A;  3K87 A;  1Y30 A;  1EJE A;  2VPA A;  4YWN A;  2RE7 A;  3VY5 A;  3NFW A;  1USC A;  2X1K A;  1AXJ A;  1W3R A;  2A2J A;  3VYA A;  2RDE A;  3F7E A;  1I0R A;  3VY2 A;  5BNC A;  1WGB A;  4IRA A;  3K88 A;  2NR4 A;  3DNH A;  2OL5 A;  1WLK A;  5ESC A;  2ASF A;  3FGE A;  2ED4 A;  3A6Q A;  1YOA A;  2ECR A;  3DB0 A;  3HMZ A;  2QCK A;  2I51 A;  3ZOH A;  3DMB A;  2QEA A;  1T9M A;  2D5M A;  2FHQ A;  4R82 A;  1JNW A;  1W3Q A;  1G78 A;  2HQ9 A;  3E4V A;  2ECU A;  2FG9 A;  1VL7 A;  3TGV A;  3ZOF A;  2IML A;  1TY9 A;  4HMU A;  5JAB A;  3U34 A;  1USF A;  1XXO A;  2I02 A;  3U0I A;  3U35 A;  5CHO A;  1WLI A;  2E83 A;  5CHE C;  1RZ1 A;  3R5L A;  4L82 A;  2R6V A;  3R5P A;  4YBN A;  4XHY A;  4HX6 A;  3GAS A;  3FKH A;  3H96 A;  3R5Z A;  3ZOD A;  1NRG A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.