1EJEA

Crystal structure of an fmn-binding protein
Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
192
structure length
192
Chain Sequence
GSQAAHMMSMDFEDFPVESAHRILTPRPTVMVTTVDEEGNINAAPFSFTMPVSIDPPVVAFASAPDHHTARNIESTHEFVINITPADIIERMWVTARDIPAGENELEAAGLAWTSSRRVKPPRIVEAPGHLECELLRMFEVGDHNLITGSVVSASVRSGAVKEGLLDVESVKPVLHVGGNKFVVGDHVRHVE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (17-22)EMPTYS1 (27-28)TIV2 (22-25)S13 (174-178)S2 (30-35)TI2 (36-39)AH2 (68-76)S3 (41-46)AH4 (105-109)S5 (58-63)S4 (49-53)TVIII1 (53-56)S10 (144-156)TIV3 (54-57)TI3 (64-67)S9 (129-141)S6 (78-83)S8 (123-124)AH3 (89-95)O1 (97-99)TII1 (100-103)S7 (113-114)TI4 (116-119)TI5 (124-127)TII2 (157-160)TII'1 (141-144)O2 (166-168)S11 (161-162)S12 (165-166)AH5 (168-171)TII'2 (178-181)O3 (184-186)S14 (181-184)AH1 (3-8)TI1 (8-11)3H2 (86-88)Updating...
connected with : NaN
publication title Structural proteomics of an archaeon.
pubmed doi rcsb
molecule keywords FMN-BINDING PROTEIN
molecule tags Ligand binding protein
source organism Methanothermobacter thermautotrophicus
total genus 43
structure length 192
sequence length 192
ec nomenclature
pdb deposition date 2000-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1ejeA00
3H96A 2OU5A 2ASFA 2IABA 1JNWA 4HMVA 3AMFA 3K87A 4L82A 4ZKYA 3TGVA 3F7EA 3CP3A 5BNCA 1G79A 2FHQA 3FGEA 1RFEA 2HTDA 3E4VA 4XHYA 1W3RA 2GJGA 5CHEC 3K86A 2ECUA 2FG9A 1USFA 3A6RA 2HQ7A 3U0IA 2OL5A 1WGBA 3B5MA 3ZOHA 1RZ1A 1G78A 2ED4A 4Z85A 3R5RA 3GASA 3BPKA 2RE7A 3FKHA 3ZOEA 3R5PA 3HY8A 2QCKA 1YOAA 3DMBA 3VY2A 3U35A 2I51A 1WLIA 3VY5A 3DNHA 3ZOGA 2Q9KA 1W3QA 1USCA 3DB0A 1CI0A 1FLMA 3KYFA 4F07A 2R0XA 3PFTA 3RH7A 2VPAA 2D5MA 3A20A 2HQ9A 3ZOFA 1I0RA 3VYAA 4HX6A 1G76A 1EJEA 1NRGA 3BA3A 3R5YA 2IMLA 5ESCA 4R82A 1XHNA 3EC6A 2X1JA 3R5LA 1W9AA 2R6VA 3KYGA 2NR4A 3U34A 3R5WA 2HTIA 2X1KA 1I0SA 2E83A 3U5WA 5JABA 1WLKA 3SWJA 3NFWA 2ECRA 3ZOCA 2D38A 2A2JA 2RDEA 3A6QA 1W3PA 4HMXA 2PTFA 3R5ZA 2IG6A 2AQ6A 1T9MA 2D36A 3HMZA 2QEAA 4HMWA 1RZ0A 1WV4A 2ARZA 4HMSA 4Y9IA 4HMTA 3IN6A 4N7RC 4YBNA 3ZODA 1Y30A 3BNKA 3CB0A 4QVBA 3AWHA 4HMUA 4YWNA 1AXJA 2I02A 1YLNA 1TY9A 2FURA 1VL7A 1XXOA 5CHOA 1DNLA 1W3OA 4IRAA 1G77A 2HHZA 4XJ2A 3K88A 2D37A
chains in the Genus database with same CATH superfamily
3H96A 2OU5A 2ASFA 2IABA 1JNWA 1Y12A 4HMVA 3AMFA 3K87A 4L82A 4ZKYA 3TGVA 3F7EA 3CP3A 5BNCA 1G79A 2FHQA 3FGEA 1RFEA 2HTDA 3E4VA 4XHYA 3EAAA 1W3RA 2L1TA 2GJGA 5CHEC 3K86A 2ECUA 2FG9A 1USFA 3A6RA 2HQ7A 3U0IA 2OL5A 1WGBA 3B5MA 3ZOHA 1RZ1A 1G78A 2ED4A 4Z85A 3R5RA 3GASA 3BPKA 2RE7A 3FKHA 3HE1A 3ZOEA 3R5PA 3HY8A 2QCKA 1YOAA 3DMBA 3VY2A 3U35A 2I51A 1WLIA 3VY5A 3DNHA 3ZOGA 2Q9KA 1W3QA 1USCA 3DB0A 4MTKA 1CI0A 1FLMA 3KYFA 4F07A 2R0XA 3PFTA 3RH7A 2VPAA 2D5MA 2HQ9A 3A20A 3ZOFA 1I0RA 3VYAA 4HX6A 1G76A 1EJEA 1NRGA 3BA3A 3R5YA 2IMLA 5ESCA 4R82A 1XHNA 3EC6A 2X1JA 3R5LA 1W9AA 2R6VA 3KYGA 2NR4A 3U34A 3R5WA 2HTIA 2X1KA 1I0SA 2E83A 4UHVA 3U5WA 5JABA 1WLKA 3SWJA 3NFWA 2P5ZX 2ECRA 3ZOCA 2D38A 2A2JA 2RDEA 3A6QA 1W3PA 4HMXA 2PTFA 3R5ZA 3V4HA 4HKHA 2IG6A 2AQ6A 1T9MA 2D36A 3HMZA 2QEAA 4HMWA 1RZ0A 1WV4A 2ARZA 4HMSA 4Y9IA 4HMTA 3IN6A 4N7RC 4YBNA 3ZODA 1Y30A 3BNKA 2K4QA 4TV4A 3CB0A 4QVBA 3AWHA 4HMUA 4W64A 4YWNA 1AXJA 2I02A 1YLNA 2GUJA 1TY9A 2FURA 1VL7A 1XXOA 5CHOA 1DNLA 1W3OA 4IRAA 1G77A 2HHZA 4XJ2A 3K88A 2D37A
chains in the Genus database with same CATH topology
3H96A 2OU5A 2ASFA 2IABA 1JNWA 4HMVA 3AMFA 3K87A 4L82A 4ZKYA 3TGVA 3F7EA 3CP3A 5BNCA 1G79A 2FHQA 3FGEA 1RFEA 2HTDA 3E4VA 4XHYA 1W3RA 2GJGA 5CHEC 3K86A 2ECUA 2FG9A 1USFA 3A6RA 2HQ7A 3U0IA 2OL5A 1WGBA 3B5MA 3ZOHA 1RZ1A 1G78A 2ED4A 4Z85A 3R5RA 3GASA 3BPKA 2RE7A 3FKHA 3ZOEA 3R5PA 3HY8A 2QCKA 1YOAA 3DMBA 3VY2A 3U35A 2I51A 1WLIA 3VY5A 3DNHA 3ZOGA 2Q9KA 1W3QA 1USCA 3DB0A 1CI0A 1FLMA 3KYFA 4F07A 2R0XA 3PFTA 3RH7A 2VPAA 2D5MA 3A20A 2HQ9A 3ZOFA 1I0RA 3VYAA 4HX6A 1G76A 1EJEA 1NRGA 3BA3A 3R5YA 2IMLA 5ESCA 4R82A 1XHNA 3EC6A 2X1JA 3R5LA 1W9AA 2R6VA 3KYGA 2NR4A 3U34A 3R5WA 2HTIA 2X1KA 1I0SA 2E83A 3U5WA 5JABA 1WLKA 3SWJA 3NFWA 2ECRA 3ZOCA 2D38A 2A2JA 2RDEA 3A6QA 1W3PA 4HMXA 2PTFA 3R5ZA 2IG6A 2AQ6A 1T9MA 2D36A 3HMZA 2QEAA 4HMWA 1RZ0A 1WV4A 2ARZA 4HMSA 4Y9IA 4HMTA 3IN6A 4N7RC 4YBNA 3ZODA 1Y30A 3BNKA 3CB0A 4QVBA 3AWHA 4HMUA 4YWNA 1AXJA 2I02A 1YLNA 1TY9A 2FURA 1VL7A 1XXOA 5CHOA 1DNLA 1W3OA 4IRAA 1G77A 2HHZA 4XJ2A 3K88A 2D37A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H96 A;  2OU5 A;  2ASF A;  2IAB A;  1JNW A;  4HMV A;  3AMF A;  3K87 A;  4L82 A;  4ZKY A;  3TGV A;  3F7E A;  3CP3 A;  5BNC A;  1G79 A;  2FHQ A;  3FGE A;  1RFE A;  2HTD A;  3E4V A;  4XHY A;  1W3R A;  2GJG A;  5CHE C;  3K86 A;  2ECU A;  2FG9 A;  1USF A;  3A6R A;  2HQ7 A;  3U0I A;  2OL5 A;  1WGB A;  3B5M A;  3ZOH A;  1RZ1 A;  1G78 A;  2ED4 A;  4Z85 A;  3R5R A;  3GAS A;  3BPK A;  2RE7 A;  3FKH A;  3ZOE A;  3R5P A;  3HY8 A;  2QCK A;  1YOA A;  3DMB A;  3VY2 A;  3U35 A;  2I51 A;  1WLI A;  3VY5 A;  3DNH A;  3ZOG A;  2Q9K A;  1W3Q A;  1USC A;  3DB0 A;  1CI0 A;  1FLM A;  3KYF A;  4F07 A;  2R0X A;  3PFT A;  3RH7 A;  2VPA A;  2D5M A;  3A20 A;  2HQ9 A;  3ZOF A;  1I0R A;  3VYA A;  4HX6 A;  1G76 A;  1EJE A;  1NRG A;  3BA3 A;  3R5Y A;  2IML A;  5ESC A;  4R82 A;  1XHN A;  3EC6 A;  2X1J A;  3R5L A;  1W9A A;  2R6V A;  3KYG A;  2NR4 A;  3U34 A;  3R5W A;  2HTI A;  2X1K A;  1I0S A;  2E83 A;  3U5W A;  5JAB A;  1WLK A;  3SWJ A;  3NFW A;  2ECR A;  3ZOC A;  2D38 A;  2A2J A;  2RDE A;  3A6Q A;  1W3P A;  4HMX A;  2PTF A;  3R5Z A;  2IG6 A;  2AQ6 A;  1T9M A;  2D36 A;  3HMZ A;  2QEA A;  4HMW A;  1RZ0 A;  1WV4 A;  2ARZ A;  4HMS A;  4Y9I A;  4HMT A;  3IN6 A;  4N7R C;  4YBN A;  3ZOD A;  1Y30 A;  3BNK A;  3CB0 A;  4QVB A;  3AWH A;  4HMU A;  4YWN A;  1AXJ A;  2I02 A;  1YLN A;  1TY9 A;  2FUR A;  1VL7 A;  1XXO A;  5CHO A;  1DNL A;  1W3O A;  4IRA A;  1G77 A;  2HHZ A;  4XJ2 A;  3K88 A;  2D37 A; 
#chains in the Genus database with same CATH topology
 3H96 A;  2OU5 A;  2ASF A;  2IAB A;  1JNW A;  1Y12 A;  4HMV A;  3AMF A;  3K87 A;  4L82 A;  4ZKY A;  3TGV A;  3F7E A;  3CP3 A;  5BNC A;  1G79 A;  2FHQ A;  3FGE A;  1RFE A;  2HTD A;  3E4V A;  4XHY A;  3EAA A;  1W3R A;  2L1T A;  2GJG A;  5CHE C;  3K86 A;  2ECU A;  2FG9 A;  1USF A;  3A6R A;  2HQ7 A;  3U0I A;  2OL5 A;  1WGB A;  3B5M A;  3ZOH A;  1RZ1 A;  1G78 A;  2ED4 A;  4Z85 A;  3R5R A;  3GAS A;  3BPK A;  2RE7 A;  3FKH A;  3HE1 A;  3ZOE A;  3R5P A;  3HY8 A;  2QCK A;  1YOA A;  3DMB A;  3VY2 A;  3U35 A;  2I51 A;  1WLI A;  3VY5 A;  3DNH A;  3ZOG A;  2Q9K A;  1W3Q A;  1USC A;  3DB0 A;  4MTK A;  1CI0 A;  1FLM A;  3KYF A;  4F07 A;  2R0X A;  3PFT A;  3RH7 A;  2VPA A;  2D5M A;  2HQ9 A;  3A20 A;  3ZOF A;  1I0R A;  3VYA A;  4HX6 A;  1G76 A;  1EJE A;  1NRG A;  3BA3 A;  3R5Y A;  2IML A;  5ESC A;  4R82 A;  1XHN A;  3EC6 A;  2X1J A;  3R5L A;  1W9A A;  2R6V A;  3KYG A;  2NR4 A;  3U34 A;  3R5W A;  2HTI A;  2X1K A;  1I0S A;  2E83 A;  4UHV A;  3U5W A;  5JAB A;  1WLK A;  3SWJ A;  3NFW A;  2P5Z X;  2ECR A;  3ZOC A;  2D38 A;  2A2J A;  2RDE A;  3A6Q A;  1W3P A;  4HMX A;  2PTF A;  3R5Z A;  3V4H A;  4HKH A;  2IG6 A;  2AQ6 A;  1T9M A;  2D36 A;  3HMZ A;  2QEA A;  4HMW A;  1RZ0 A;  1WV4 A;  2ARZ A;  4HMS A;  4Y9I A;  4HMT A;  3IN6 A;  4N7R C;  4YBN A;  3ZOD A;  1Y30 A;  3BNK A;  2K4Q A;  4TV4 A;  3CB0 A;  4QVB A;  3AWH A;  4HMU A;  4W64 A;  4YWN A;  1AXJ A;  2I02 A;  1YLN A;  2GUJ A;  1TY9 A;  2FUR A;  1VL7 A;  1XXO A;  5CHO A;  1DNL A;  1W3O A;  4IRA A;  1G77 A;  2HHZ A;  4XJ2 A;  3K88 A;  2D37 A; 
#chains in the Genus database with same CATH homology
 3H96 A;  2OU5 A;  2ASF A;  2IAB A;  1JNW A;  4HMV A;  3AMF A;  3K87 A;  4L82 A;  4ZKY A;  3TGV A;  3F7E A;  3CP3 A;  5BNC A;  1G79 A;  2FHQ A;  3FGE A;  1RFE A;  2HTD A;  3E4V A;  4XHY A;  1W3R A;  2GJG A;  5CHE C;  3K86 A;  2ECU A;  2FG9 A;  1USF A;  3A6R A;  2HQ7 A;  3U0I A;  2OL5 A;  1WGB A;  3B5M A;  3ZOH A;  1RZ1 A;  1G78 A;  2ED4 A;  4Z85 A;  3R5R A;  3GAS A;  3BPK A;  2RE7 A;  3FKH A;  3ZOE A;  3R5P A;  3HY8 A;  2QCK A;  1YOA A;  3DMB A;  3VY2 A;  3U35 A;  2I51 A;  1WLI A;  3VY5 A;  3DNH A;  3ZOG A;  2Q9K A;  1W3Q A;  1USC A;  3DB0 A;  1CI0 A;  1FLM A;  3KYF A;  4F07 A;  2R0X A;  3PFT A;  3RH7 A;  2VPA A;  2D5M A;  3A20 A;  2HQ9 A;  3ZOF A;  1I0R A;  3VYA A;  4HX6 A;  1G76 A;  1EJE A;  1NRG A;  3BA3 A;  3R5Y A;  2IML A;  5ESC A;  4R82 A;  1XHN A;  3EC6 A;  2X1J A;  3R5L A;  1W9A A;  2R6V A;  3KYG A;  2NR4 A;  3U34 A;  3R5W A;  2HTI A;  2X1K A;  1I0S A;  2E83 A;  3U5W A;  5JAB A;  1WLK A;  3SWJ A;  3NFW A;  2ECR A;  3ZOC A;  2D38 A;  2A2J A;  2RDE A;  3A6Q A;  1W3P A;  4HMX A;  2PTF A;  3R5Z A;  2IG6 A;  2AQ6 A;  1T9M A;  2D36 A;  3HMZ A;  2QEA A;  4HMW A;  1RZ0 A;  1WV4 A;  2ARZ A;  4HMS A;  4Y9I A;  4HMT A;  3IN6 A;  4N7R C;  4YBN A;  3ZOD A;  1Y30 A;  3BNK A;  3CB0 A;  4QVB A;  3AWH A;  4HMU A;  4YWN A;  1AXJ A;  2I02 A;  1YLN A;  1TY9 A;  2FUR A;  1VL7 A;  1XXO A;  5CHO A;  1DNL A;  1W3O A;  4IRA A;  1G77 A;  2HHZ A;  4XJ2 A;  3K88 A;  2D37 A; 
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