1EJE | Genus

Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	43
sequence length	192
structure length	192
Chain Sequence	GSQAAHMMSMDFEDFPVESAHRILTPRPTVMVTTVDEEGNINAAPFSFTMPVSIDPPVVAFASAPDHHTARNIESTHEFVINITPADIIERMWVTARDIPAGENELEAAGLAWTSSRRVKPPRIVEAPGHLECELLRMFEVGDHNLITGSVVSASVRSGAVKEGLLDVESVKPVLHVGGNKFVVGDHVRHVE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structural proteomics of an archaeon. pubmed doi rcsb
molecule keywords	FMN-BINDING PROTEIN
molecule tags	Ligand binding protein
source organism	Methanothermobacter thermautotrophicus
total genus	43
structure length	192
sequence length	192
ec nomenclature
pdb deposition date	2000-03-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01613	Flavin_Reduct	Flavin reductase like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	1ejeA00

3ZOFA 4ZKYA 3VY5A 1CI0A 1NRGA 3KYFA 3CB0A 2IG6A 3FKHA 4N7RC 4XHYA 2D36A 3PFTA 1WLIA 3DNHA 3K88A 2RDEA 3AWHA 2HHZA 2FG9A 3R5ZA 4Y9IA 3NFWA 2HTDA 4HMXA 2IMLA 3DMBA 1WGBA 3SWJA 2ECUA 3K87A 3IN6A 4HMTA 2R6VA 2PTFA 4QVBA 3U5WA 2IABA 2FHQA 2RE7A 3DB0A 4YWNA 3U0IA 2ARZA 2HQ9A 1AXJA 3BPKA 3KYGA 1T9MA 1XXOA 5CHOA 1YOAA 2X1JA 2ASFA 1I0RA 3CP3A 4Z85A 1XHNA 4HX6A 4XJ2A 3BNKA 1Y30A 1RZ1A 1G78A 1JNWA 2QCKA 4HMVA 2FURA 3ZOGA 4F07A 3U35A 3VY2A 2ECRA 3ZOCA 1G77A 2E83A 3R5RA 3AMFA 2R0XA 2I51A 1YLNA 4R82A 3ZOEA 1USFA 3E4VA 2VPAA 1RZ0A 2D5MA 1W9AA 2HTIA 1WLKA 1G79A 5JABA 1W3QA 3FGEA 3R5WA 3ZOHA 3HMZA 3HY8A 3A6RA 4HMSA 3VYAA 5BNCA 3R5LA 5CHEC 1USCA 2AQ6A 3U34A 3F7EA 1RFEA 3H96A 2GJGA 3K86A 1I0SA 3R5YA 3GASA 2X1KA 2OU5A 2Q9KA 2ED4A 2OL5A 3TGVA 3A20A 3ZODA 1FLMA 1EJEA 1TY9A 2NR4A 1VL7A 4L82A 1DNLA 3R5PA 4HMUA 4IRAA 1W3RA 2HQ7A 3BA3A 1WV4A 1W3OA 3EC6A 1W3PA 4YBNA 1G76A 2A2JA 4HMWA 2D38A 3B5MA 2QEAA 2I02A 5ESCA 3A6QA 3RH7A 2D37A
chains in the Genus database with same CATH superfamily

3ZOFA 4ZKYA 3VY5A 1CI0A 1NRGA 3KYFA 3CB0A 2IG6A 3FKHA 4N7RC 4XHYA 2D36A 3PFTA 1WLIA 3DNHA 4MTKA 4W64A 3K88A 2RDEA 4HKHA 3AWHA 2HHZA 2FG9A 3R5ZA 4Y9IA 3NFWA 2HTDA 4HMXA 2IMLA 3DMBA 1WGBA 2P5ZX 3SWJA 4UHVA 2ECUA 3K87A 3IN6A 4HMTA 2R6VA 2PTFA 4QVBA 3U5WA 2IABA 2FHQA 2RE7A 3DB0A 4YWNA 3U0IA 2ARZA 2HQ9A 1AXJA 3BPKA 3KYGA 1T9MA 1XXOA 5CHOA 1YOAA 2X1JA 2ASFA 1I0RA 3CP3A 4TV4A 4Z85A 1XHNA 4HX6A 4XJ2A 3BNKA 1Y30A 1RZ1A 1G78A 1JNWA 2QCKA 3EAAA 3HE1A 4HMVA 2FURA 3ZOGA 4F07A 3U35A 3VY2A 2ECRA 3ZOCA 1G77A 2E83A 3R5RA 3AMFA 2R0XA 2I51A 1YLNA 4R82A 3ZOEA 1USFA 3E4VA 2VPAA 1RZ0A 2D5MA 1Y12A 1W9AA 2HTIA 1WLKA 3V4HA 1G79A 5JABA 1W3QA 3FGEA 3R5WA 3ZOHA 3HMZA 3HY8A 3A6RA 4HMSA 3VYAA 5BNCA 3R5LA 5CHEC 1USCA 2AQ6A 3U34A 3F7EA 1RFEA 3H96A 2GJGA 3K86A 1I0SA 2K4QA 3R5YA 3GASA 2X1KA 2OU5A 2Q9KA 2ED4A 2OL5A 3TGVA 3A20A 3ZODA 1FLMA 1EJEA 2GUJA 1TY9A 2NR4A 1VL7A 4L82A 1DNLA 3R5PA 4HMUA 4IRAA 1W3RA 2HQ7A 3BA3A 1WV4A 1W3OA 3EC6A 1W3PA 4YBNA 1G76A 2A2JA 4HMWA 2D38A 3B5MA 2QEAA 2I02A 5ESCA 3A6QA 3RH7A 2L1TA 2D37A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3ZOF A;  4ZKY A;  3VY5 A;  1CI0 A;  1NRG A;  3KYF A;  3CB0 A;  2IG6 A;  3FKH A;  4N7R C;  4XHY A;  2D36 A;  3PFT A;  1WLI A;  3DNH A;  3K88 A;  2RDE A;  3AWH A;  2HHZ A;  2FG9 A;  3R5Z A;  4Y9I A;  3NFW A;  2HTD A;  4HMX A;  2IML A;  3DMB A;  1WGB A;  3SWJ A;  2ECU A;  3K87 A;  3IN6 A;  4HMT A;  2R6V A;  2PTF A;  4QVB A;  3U5W A;  2IAB A;  2FHQ A;  2RE7 A;  3DB0 A;  4YWN A;  3U0I A;  2ARZ A;  2HQ9 A;  1AXJ A;  3BPK A;  3KYG A;  1T9M A;  1XXO A;  5CHO A;  1YOA A;  2X1J A;  2ASF A;  1I0R A;  3CP3 A;  4Z85 A;  1XHN A;  4HX6 A;  4XJ2 A;  3BNK A;  1Y30 A;  1RZ1 A;  1G78 A;  1JNW A;  2QCK A;  4HMV A;  2FUR A;  3ZOG A;  4F07 A;  3U35 A;  3VY2 A;  2ECR A;  3ZOC A;  1G77 A;  2E83 A;  3R5R A;  3AMF A;  2R0X A;  2I51 A;  1YLN A;  4R82 A;  3ZOE A;  1USF A;  3E4V A;  2VPA A;  1RZ0 A;  2D5M A;  1W9A A;  2HTI A;  1WLK A;  1G79 A;  5JAB A;  1W3Q A;  3FGE A;  3R5W A;  3ZOH A;  3HMZ A;  3HY8 A;  3A6R A;  4HMS A;  3VYA A;  5BNC A;  3R5L A;  5CHE C;  1USC A;  2AQ6 A;  3U34 A;  3F7E A;  1RFE A;  3H96 A;  2GJG A;  3K86 A;  1I0S A;  3R5Y A;  3GAS A;  2X1K A;  2OU5 A;  2Q9K A;  2ED4 A;  2OL5 A;  3TGV A;  3A20 A;  3ZOD A;  1FLM A;  1EJE A;  1TY9 A;  2NR4 A;  1VL7 A;  4L82 A;  1DNL A;  3R5P A;  4HMU A;  4IRA A;  1W3R A;  2HQ7 A;  3BA3 A;  1WV4 A;  1W3O A;  3EC6 A;  1W3P A;  4YBN A;  1G76 A;  2A2J A;  4HMW A;  2D38 A;  3B5M A;  2QEA A;  2I02 A;  5ESC A;  3A6Q A;  3RH7 A;  2D37 A; 
#chains in the Genus database with same CATH topology
 3ZOF A;  4ZKY A;  3VY5 A;  1CI0 A;  1NRG A;  3KYF A;  3CB0 A;  2IG6 A;  3FKH A;  4N7R C;  4XHY A;  2D36 A;  3PFT A;  1WLI A;  3DNH A;  4MTK A;  4W64 A;  3K88 A;  2RDE A;  4HKH A;  3AWH A;  2HHZ A;  2FG9 A;  3R5Z A;  4Y9I A;  3NFW A;  2HTD A;  4HMX A;  2IML A;  3DMB A;  1WGB A;  2P5Z X;  3SWJ A;  4UHV A;  2ECU A;  3K87 A;  3IN6 A;  4HMT A;  2R6V A;  2PTF A;  4QVB A;  3U5W A;  2IAB A;  2FHQ A;  2RE7 A;  3DB0 A;  4YWN A;  3U0I A;  2ARZ A;  2HQ9 A;  1AXJ A;  3BPK A;  3KYG A;  1T9M A;  1XXO A;  5CHO A;  1YOA A;  2X1J A;  2ASF A;  1I0R A;  3CP3 A;  4TV4 A;  4Z85 A;  1XHN A;  4HX6 A;  4XJ2 A;  3BNK A;  1Y30 A;  1RZ1 A;  1G78 A;  1JNW A;  2QCK A;  3EAA A;  3HE1 A;  4HMV A;  2FUR A;  3ZOG A;  4F07 A;  3U35 A;  3VY2 A;  2ECR A;  3ZOC A;  1G77 A;  2E83 A;  3R5R A;  3AMF A;  2R0X A;  2I51 A;  1YLN A;  4R82 A;  3ZOE A;  1USF A;  3E4V A;  2VPA A;  1RZ0 A;  2D5M A;  1Y12 A;  1W9A A;  2HTI A;  1WLK A;  3V4H A;  1G79 A;  5JAB A;  1W3Q A;  3FGE A;  3R5W A;  3ZOH A;  3HMZ A;  3HY8 A;  3A6R A;  4HMS A;  3VYA A;  5BNC A;  3R5L A;  5CHE C;  1USC A;  2AQ6 A;  3U34 A;  3F7E A;  1RFE A;  3H96 A;  2GJG A;  3K86 A;  1I0S A;  2K4Q A;  3R5Y A;  3GAS A;  2X1K A;  2OU5 A;  2Q9K A;  2ED4 A;  2OL5 A;  3TGV A;  3A20 A;  3ZOD A;  1FLM A;  1EJE A;  2GUJ A;  1TY9 A;  2NR4 A;  1VL7 A;  4L82 A;  1DNL A;  3R5P A;  4HMU A;  4IRA A;  1W3R A;  2HQ7 A;  3BA3 A;  1WV4 A;  1W3O A;  3EC6 A;  1W3P A;  4YBN A;  1G76 A;  2A2J A;  4HMW A;  2D38 A;  3B5M A;  2QEA A;  2I02 A;  5ESC A;  3A6Q A;  3RH7 A;  2L1T A;  2D37 A; 
#chains in the Genus database with same CATH homology
 3ZOF A;  4ZKY A;  3VY5 A;  1CI0 A;  1NRG A;  3KYF A;  3CB0 A;  2IG6 A;  3FKH A;  4N7R C;  4XHY A;  2D36 A;  3PFT A;  1WLI A;  3DNH A;  3K88 A;  2RDE A;  3AWH A;  2HHZ A;  2FG9 A;  3R5Z A;  4Y9I A;  3NFW A;  2HTD A;  4HMX A;  2IML A;  3DMB A;  1WGB A;  3SWJ A;  2ECU A;  3K87 A;  3IN6 A;  4HMT A;  2R6V A;  2PTF A;  4QVB A;  3U5W A;  2IAB A;  2FHQ A;  2RE7 A;  3DB0 A;  4YWN A;  3U0I A;  2ARZ A;  2HQ9 A;  1AXJ A;  3BPK A;  3KYG A;  1T9M A;  1XXO A;  5CHO A;  1YOA A;  2X1J A;  2ASF A;  1I0R A;  3CP3 A;  4Z85 A;  1XHN A;  4HX6 A;  4XJ2 A;  3BNK A;  1Y30 A;  1RZ1 A;  1G78 A;  1JNW A;  2QCK A;  4HMV A;  2FUR A;  3ZOG A;  4F07 A;  3U35 A;  3VY2 A;  2ECR A;  3ZOC A;  1G77 A;  2E83 A;  3R5R A;  3AMF A;  2R0X A;  2I51 A;  1YLN A;  4R82 A;  3ZOE A;  1USF A;  3E4V A;  2VPA A;  1RZ0 A;  2D5M A;  1W9A A;  2HTI A;  1WLK A;  1G79 A;  5JAB A;  1W3Q A;  3FGE A;  3R5W A;  3ZOH A;  3HMZ A;  3HY8 A;  3A6R A;  4HMS A;  3VYA A;  5BNC A;  3R5L A;  5CHE C;  1USC A;  2AQ6 A;  3U34 A;  3F7E A;  1RFE A;  3H96 A;  2GJG A;  3K86 A;  1I0S A;  3R5Y A;  3GAS A;  2X1K A;  2OU5 A;  2Q9K A;  2ED4 A;  2OL5 A;  3TGV A;  3A20 A;  3ZOD A;  1FLM A;  1EJE A;  1TY9 A;  2NR4 A;  1VL7 A;  4L82 A;  1DNL A;  3R5P A;  4HMU A;  4IRA A;  1W3R A;  2HQ7 A;  3BA3 A;  1WV4 A;  1W3O A;  3EC6 A;  1W3P A;  4YBN A;  1G76 A;  2A2J A;  4HMW A;  2D38 A;  3B5M A;  2QEA A;  2I02 A;  5ESC A;  3A6Q A;  3RH7 A;  2D37 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1EJEA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations