1G77A

X-ray structure of escherichia coli pyridoxine 5`-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 a resolution
Total Genus 50
2040608010012014016018001020304050
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
199
structure length
199
Chain Sequence
GGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI6 (175-178)TVIII1 (28-31)AH1 (31-45)TI1 (49-52)TIV1 (47-50)TI2 (59-62)S1 (54-58)TIV2 (122-125)AH4 (153-167)S2 (64-67)TI3 (75-78)AH2 (88-95)S3 (81-84)TI4 (84-87)S4 (98-103)O1 (103-105)3H2 (106-108)S5 (110-120)3H3 (126-132)AH3 (135-143)TII1 (145-148)TI'1 (167-170)S7 (187-192)S6 (178-183)TII2 (194-197)TIV4 (185-188)TIV3 (169-172)3H1 (24-26)Updating...
connected with : NaN
publication title X-ray structure of Escherichia coli pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 A resolution.
pubmed doi rcsb
molecule keywords PYRIDOXINE 5`-PHOSPHATE OXIDASE
molecule tags Oxidoreductase
source organism Escherichia coli
total genus 50
structure length 199
sequence length 199
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2000-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1g77A00
1USFA 2R0XA 3AWHA 3E4VA 3DMBA 3PFTA 2FURA 1W3RA 1W3OA 2D36A 4YBNA 3BPKA 3U34A 5ESCA 3SWJA 3K88A 2I02A 3HY8A 3EC6A 4HMUA 2IABA 3ZOEA 4QVBA 1G77A 3ZOGA 3U0IA 2VPAA 1G78A 3FKHA 4F07A 2QEAA 1XXOA 1WV4A 3GASA 2D38A 4IRAA 3KYGA 3VY5A 3ZOHA 3A20A 3F7EA 4XJ2A 2D37A 2OL5A 1G76A 2ARZA 3VY2A 4HMVA 4HX6A 1CI0A 1RZ0A 1W9AA 2GJGA 2ECUA 2IMLA 3ZOFA 2RDEA 3DB0A 3ZODA 4R82A 3R5YA 4HMWA 3R5RA 3KYFA 5BNCA 3HMZA 4ZKYA 1USCA 2RE7A 3K86A 5CHOA 1AXJA 3BNKA 3H96A 2FHQA 2HTDA 2A2JA 3R5WA 2PTFA 3R5PA 2HTIA 4N7RC 1TY9A 2FG9A 1G79A 4HMSA 4Y9IA 3FGEA 3A6RA 5JABA 2ASFA 1WLKA 4XHYA 1WLIA 1EJEA 2AQ6A 2NR4A 1WGBA 3R5LA 2HHZA 3ZOCA 3K87A 3RH7A 2Q9KA 1W3QA 2X1JA 1VL7A 1YLNA 3B5MA 3NFWA 3AMFA 5CHEC 4Z85A 1RZ1A 1DNLA 1JNWA 1Y30A 2HQ7A 4HMTA 3CB0A 1I0RA 3CP3A 3DNHA 2I51A 1NRGA 3U5WA 2ECRA 3VYAA 1I0SA 2R6VA 2D5MA 4HMXA 2ED4A 1T9MA 2X1KA 2QCKA 2OU5A 2IG6A 3R5ZA 1XHNA 1YOAA 2E83A 1W3PA 1RFEA 4L82A 3IN6A 2HQ9A 3A6QA 1FLMA 3TGVA 3U35A 3BA3A 4YWNA
chains in the Genus database with same CATH superfamily
1USFA 2R0XA 3AWHA 3E4VA 3DMBA 3PFTA 2P5ZX 2FURA 1W3RA 1W3OA 2D36A 4YBNA 3BPKA 3U34A 5ESCA 3SWJA 3K88A 2I02A 3HY8A 3EC6A 4HMUA 2IABA 3ZOEA 4QVBA 1G77A 3ZOGA 3U0IA 2VPAA 1G78A 3FKHA 4F07A 2L1TA 2QEAA 1XXOA 1WV4A 3GASA 2D38A 4IRAA 3KYGA 3VY5A 3ZOHA 3A20A 3F7EA 4XJ2A 2D37A 2OL5A 1G76A 2ARZA 3VY2A 4HMVA 4HX6A 1CI0A 1RZ0A 1W9AA 2GJGA 2ECUA 2IMLA 3ZOFA 2RDEA 3DB0A 3ZODA 4R82A 3R5YA 4HMWA 3R5RA 3KYFA 5BNCA 3HMZA 4ZKYA 1USCA 2RE7A 2K4QA 3K86A 5CHOA 1AXJA 3BNKA 3H96A 2FHQA 2HTDA 2A2JA 3R5WA 2PTFA 3R5PA 2HTIA 4N7RC 1TY9A 2FG9A 3EAAA 1G79A 4HMSA 4Y9IA 3FGEA 3A6RA 5JABA 2ASFA 1WLKA 4XHYA 1WLIA 1EJEA 2AQ6A 2NR4A 1WGBA 3R5LA 4MTKA 2HHZA 3ZOCA 3K87A 3RH7A 2Q9KA 1W3QA 1Y12A 2X1JA 1VL7A 1YLNA 3B5MA 3NFWA 3AMFA 5CHEC 4Z85A 1RZ1A 4HKHA 1DNLA 1JNWA 1Y30A 2HQ7A 4HMTA 3CB0A 1I0RA 3CP3A 3DNHA 2I51A 1NRGA 3U5WA 2ECRA 3VYAA 1I0SA 2R6VA 3HE1A 2D5MA 4HMXA 2ED4A 1T9MA 2X1KA 2QCKA 2OU5A 2GUJA 2IG6A 3R5ZA 1XHNA 1YOAA 3V4HA 2E83A 4TV4A 1W3PA 1RFEA 4L82A 4W64A 3IN6A 2HQ9A 4UHVA 3A6QA 1FLMA 3TGVA 3U35A 3BA3A 4YWNA
chains in the Genus database with same CATH topology
1USFA 2R0XA 3AWHA 3E4VA 3DMBA 3PFTA 2FURA 1W3RA 1W3OA 2D36A 4YBNA 3BPKA 3U34A 5ESCA 3SWJA 3K88A 2I02A 3HY8A 3EC6A 4HMUA 2IABA 3ZOEA 4QVBA 1G77A 3ZOGA 3U0IA 2VPAA 1G78A 3FKHA 4F07A 2QEAA 1XXOA 1WV4A 3GASA 2D38A 4IRAA 3KYGA 3VY5A 3ZOHA 3A20A 3F7EA 4XJ2A 2D37A 2OL5A 1G76A 2ARZA 3VY2A 4HMVA 4HX6A 1CI0A 1RZ0A 1W9AA 2GJGA 2ECUA 2IMLA 3ZOFA 2RDEA 3DB0A 3ZODA 4R82A 3R5YA 4HMWA 3R5RA 3KYFA 5BNCA 3HMZA 4ZKYA 1USCA 2RE7A 3K86A 5CHOA 1AXJA 3BNKA 3H96A 2FHQA 2HTDA 2A2JA 3R5WA 2PTFA 3R5PA 2HTIA 4N7RC 1TY9A 2FG9A 1G79A 4HMSA 4Y9IA 3FGEA 3A6RA 5JABA 2ASFA 1WLKA 4XHYA 1WLIA 1EJEA 2AQ6A 2NR4A 1WGBA 3R5LA 2HHZA 3ZOCA 3K87A 3RH7A 2Q9KA 1W3QA 2X1JA 1VL7A 1YLNA 3B5MA 3NFWA 3AMFA 5CHEC 4Z85A 1RZ1A 1DNLA 1JNWA 1Y30A 2HQ7A 4HMTA 3CB0A 1I0RA 3CP3A 3DNHA 2I51A 1NRGA 3U5WA 2ECRA 3VYAA 1I0SA 2R6VA 2D5MA 4HMXA 2ED4A 1T9MA 2X1KA 2QCKA 2OU5A 2IG6A 3R5ZA 1XHNA 1YOAA 2E83A 1W3PA 1RFEA 4L82A 3IN6A 2HQ9A 3A6QA 1FLMA 3TGVA 3U35A 3BA3A 4YWNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1USF A;  2R0X A;  3AWH A;  3E4V A;  3DMB A;  3PFT A;  2FUR A;  1W3R A;  1W3O A;  2D36 A;  4YBN A;  3BPK A;  3U34 A;  5ESC A;  3SWJ A;  3K88 A;  2I02 A;  3HY8 A;  3EC6 A;  4HMU A;  2IAB A;  3ZOE A;  4QVB A;  1G77 A;  3ZOG A;  3U0I A;  2VPA A;  1G78 A;  3FKH A;  4F07 A;  2QEA A;  1XXO A;  1WV4 A;  3GAS A;  2D38 A;  4IRA A;  3KYG A;  3VY5 A;  3ZOH A;  3A20 A;  3F7E A;  4XJ2 A;  2D37 A;  2OL5 A;  1G76 A;  2ARZ A;  3VY2 A;  4HMV A;  4HX6 A;  1CI0 A;  1RZ0 A;  1W9A A;  2GJG A;  2ECU A;  2IML A;  3ZOF A;  2RDE A;  3DB0 A;  3ZOD A;  4R82 A;  3R5Y A;  4HMW A;  3R5R A;  3KYF A;  5BNC A;  3HMZ A;  4ZKY A;  1USC A;  2RE7 A;  3K86 A;  5CHO A;  1AXJ A;  3BNK A;  3H96 A;  2FHQ A;  2HTD A;  2A2J A;  3R5W A;  2PTF A;  3R5P A;  2HTI A;  4N7R C;  1TY9 A;  2FG9 A;  1G79 A;  4HMS A;  4Y9I A;  3FGE A;  3A6R A;  5JAB A;  2ASF A;  1WLK A;  4XHY A;  1WLI A;  1EJE A;  2AQ6 A;  2NR4 A;  1WGB A;  3R5L A;  2HHZ A;  3ZOC A;  3K87 A;  3RH7 A;  2Q9K A;  1W3Q A;  2X1J A;  1VL7 A;  1YLN A;  3B5M A;  3NFW A;  3AMF A;  5CHE C;  4Z85 A;  1RZ1 A;  1DNL A;  1JNW A;  1Y30 A;  2HQ7 A;  4HMT A;  3CB0 A;  1I0R A;  3CP3 A;  3DNH A;  2I51 A;  1NRG A;  3U5W A;  2ECR A;  3VYA A;  1I0S A;  2R6V A;  2D5M A;  4HMX A;  2ED4 A;  1T9M A;  2X1K A;  2QCK A;  2OU5 A;  2IG6 A;  3R5Z A;  1XHN A;  1YOA A;  2E83 A;  1W3P A;  1RFE A;  4L82 A;  3IN6 A;  2HQ9 A;  3A6Q A;  1FLM A;  3TGV A;  3U35 A;  3BA3 A;  4YWN A; 
#chains in the Genus database with same CATH topology
 1USF A;  2R0X A;  3AWH A;  3E4V A;  3DMB A;  3PFT A;  2P5Z X;  2FUR A;  1W3R A;  1W3O A;  2D36 A;  4YBN A;  3BPK A;  3U34 A;  5ESC A;  3SWJ A;  3K88 A;  2I02 A;  3HY8 A;  3EC6 A;  4HMU A;  2IAB A;  3ZOE A;  4QVB A;  1G77 A;  3ZOG A;  3U0I A;  2VPA A;  1G78 A;  3FKH A;  4F07 A;  2L1T A;  2QEA A;  1XXO A;  1WV4 A;  3GAS A;  2D38 A;  4IRA A;  3KYG A;  3VY5 A;  3ZOH A;  3A20 A;  3F7E A;  4XJ2 A;  2D37 A;  2OL5 A;  1G76 A;  2ARZ A;  3VY2 A;  4HMV A;  4HX6 A;  1CI0 A;  1RZ0 A;  1W9A A;  2GJG A;  2ECU A;  2IML A;  3ZOF A;  2RDE A;  3DB0 A;  3ZOD A;  4R82 A;  3R5Y A;  4HMW A;  3R5R A;  3KYF A;  5BNC A;  3HMZ A;  4ZKY A;  1USC A;  2RE7 A;  2K4Q A;  3K86 A;  5CHO A;  1AXJ A;  3BNK A;  3H96 A;  2FHQ A;  2HTD A;  2A2J A;  3R5W A;  2PTF A;  3R5P A;  2HTI A;  4N7R C;  1TY9 A;  2FG9 A;  3EAA A;  1G79 A;  4HMS A;  4Y9I A;  3FGE A;  3A6R A;  5JAB A;  2ASF A;  1WLK A;  4XHY A;  1WLI A;  1EJE A;  2AQ6 A;  2NR4 A;  1WGB A;  3R5L A;  4MTK A;  2HHZ A;  3ZOC A;  3K87 A;  3RH7 A;  2Q9K A;  1W3Q A;  1Y12 A;  2X1J A;  1VL7 A;  1YLN A;  3B5M A;  3NFW A;  3AMF A;  5CHE C;  4Z85 A;  1RZ1 A;  4HKH A;  1DNL A;  1JNW A;  1Y30 A;  2HQ7 A;  4HMT A;  3CB0 A;  1I0R A;  3CP3 A;  3DNH A;  2I51 A;  1NRG A;  3U5W A;  2ECR A;  3VYA A;  1I0S A;  2R6V A;  3HE1 A;  2D5M A;  4HMX A;  2ED4 A;  1T9M A;  2X1K A;  2QCK A;  2OU5 A;  2GUJ A;  2IG6 A;  3R5Z A;  1XHN A;  1YOA A;  3V4H A;  2E83 A;  4TV4 A;  1W3P A;  1RFE A;  4L82 A;  4W64 A;  3IN6 A;  2HQ9 A;  4UHV A;  3A6Q A;  1FLM A;  3TGV A;  3U35 A;  3BA3 A;  4YWN A; 
#chains in the Genus database with same CATH homology
 1USF A;  2R0X A;  3AWH A;  3E4V A;  3DMB A;  3PFT A;  2FUR A;  1W3R A;  1W3O A;  2D36 A;  4YBN A;  3BPK A;  3U34 A;  5ESC A;  3SWJ A;  3K88 A;  2I02 A;  3HY8 A;  3EC6 A;  4HMU A;  2IAB A;  3ZOE A;  4QVB A;  1G77 A;  3ZOG A;  3U0I A;  2VPA A;  1G78 A;  3FKH A;  4F07 A;  2QEA A;  1XXO A;  1WV4 A;  3GAS A;  2D38 A;  4IRA A;  3KYG A;  3VY5 A;  3ZOH A;  3A20 A;  3F7E A;  4XJ2 A;  2D37 A;  2OL5 A;  1G76 A;  2ARZ A;  3VY2 A;  4HMV A;  4HX6 A;  1CI0 A;  1RZ0 A;  1W9A A;  2GJG A;  2ECU A;  2IML A;  3ZOF A;  2RDE A;  3DB0 A;  3ZOD A;  4R82 A;  3R5Y A;  4HMW A;  3R5R A;  3KYF A;  5BNC A;  3HMZ A;  4ZKY A;  1USC A;  2RE7 A;  3K86 A;  5CHO A;  1AXJ A;  3BNK A;  3H96 A;  2FHQ A;  2HTD A;  2A2J A;  3R5W A;  2PTF A;  3R5P A;  2HTI A;  4N7R C;  1TY9 A;  2FG9 A;  1G79 A;  4HMS A;  4Y9I A;  3FGE A;  3A6R A;  5JAB A;  2ASF A;  1WLK A;  4XHY A;  1WLI A;  1EJE A;  2AQ6 A;  2NR4 A;  1WGB A;  3R5L A;  2HHZ A;  3ZOC A;  3K87 A;  3RH7 A;  2Q9K A;  1W3Q A;  2X1J A;  1VL7 A;  1YLN A;  3B5M A;  3NFW A;  3AMF A;  5CHE C;  4Z85 A;  1RZ1 A;  1DNL A;  1JNW A;  1Y30 A;  2HQ7 A;  4HMT A;  3CB0 A;  1I0R A;  3CP3 A;  3DNH A;  2I51 A;  1NRG A;  3U5W A;  2ECR A;  3VYA A;  1I0S A;  2R6V A;  2D5M A;  4HMX A;  2ED4 A;  1T9M A;  2X1K A;  2QCK A;  2OU5 A;  2IG6 A;  3R5Z A;  1XHN A;  1YOA A;  2E83 A;  1W3P A;  1RFE A;  4L82 A;  3IN6 A;  2HQ9 A;  3A6Q A;  1FLM A;  3TGV A;  3U35 A;  3BA3 A;  4YWN A; 
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