1G77A

X-ray structure of escherichia coli pyridoxine 5`-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 a resolution
Total Genus 50
2040608010012014016018001020304050
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
199
structure length
199
Chain Sequence
GGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI6 (175-178)TVIII1 (28-31)AH1 (31-45)TI1 (49-52)TIV1 (47-50)TI2 (59-62)S1 (54-58)TIV2 (122-125)AH4 (153-167)S2 (64-67)TI3 (75-78)AH2 (88-95)S3 (81-84)TI4 (84-87)S4 (98-103)O1 (103-105)3H2 (106-108)S5 (110-120)3H3 (126-132)AH3 (135-143)TII1 (145-148)TI'1 (167-170)S7 (187-192)S6 (178-183)TII2 (194-197)TIV4 (185-188)TIV3 (169-172)3H1 (24-26)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Escherichia coli
publication title X-ray structure of Escherichia coli pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 A resolution.
pubmed doi rcsb
molecule keywords PYRIDOXINE 5`-PHOSPHATE OXIDASE
total genus 50
structure length 199
sequence length 199
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2000-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1g77A00
2GJGA 4ZKYA 5JABA 3BPKA 2A2JA 1T9MA 2HTIA 3ZOEA 2I02A 1AXJA 3AWHA 2HQ9A 3U34A 3BA3A 3CP3A 2HQ7A 3R5WA 4HMWA 1WV4A 2I51A 4L82A 4XJ2A 2ECRA 1XHNA 2FG9A 1WGBA 2ECUA 2D37A 3B5MA 3R5ZA 5CHOA 3ZOGA 1W3OA 3ZOCA 3SWJA 4Y9IA 3ZOHA 2R0XA 5BNCA 2FURA 4R82A 2QEAA 3TGVA 3GASA 3RH7A 3DMBA 1G77A 2QCKA 1G79A 4N7RC 4HMVA 1FLMA 1Y30A 2HTDA 2IABA 3U5WA 2OU5A 1XXOA 4YBNA 2X1KA 1G78A 2ARZA 1I0SA 3NFWA 5CHEC 3K87A 4YWNA 4F07A 3K86A 4XHYA 2IMLA 2OL5A 2AQ6A 1VL7A 5ESCA 3ZOFA 1USFA 4QVBA 2Q9KA 3BNKA 2D38A 1DNLA 1NRGA 1I0RA 2X1JA 3VYAA 1RZ1A 1EJEA 2ASFA 2D5MA 2VPAA 2PTFA 2D36A 1CI0A 3HY8A 3DNHA 3KYFA 3F7EA 3R5YA 4IRAA 4HMXA 3VY5A 1W3QA 2NR4A 2RE7A 3EC6A 1TY9A 3CB0A 3FKHA 1JNWA 2R6VA 1WLIA 3U0IA 4Z85A 3R5LA 4HMSA 4HMUA 3DB0A 3A6QA 3A6RA 3U35A 4HX6A 1W3PA 2FHQA 2E83A 3PFTA 3KYGA 4HMTA 3ZODA 1W9AA 2RDEA 1RZ0A 1YOAA 3R5RA 1G76A 1W3RA 2ED4A 1YLNA 3IN6A 2IG6A 3K88A 1WLKA 2HHZA 3AMFA 3HMZA 3E4VA 3FGEA 3R5PA 3H96A 1USCA 1RFEA 3VY2A 3A20A
chains in the Genus database with same CATH superfamily
2GJGA 4ZKYA 5JABA 3BPKA 4MTKA 4TV4A 2A2JA 1T9MA 2HTIA 3ZOEA 2I02A 1AXJA 3AWHA 2HQ9A 3U34A 3BA3A 2P5ZX 3CP3A 2HQ7A 4HKHA 3EAAA 3R5WA 4HMWA 1WV4A 2I51A 4L82A 4XJ2A 2ECRA 1XHNA 2FG9A 1WGBA 2ECUA 2D37A 3B5MA 3R5ZA 5CHOA 3ZOGA 1W3OA 3ZOCA 3SWJA 3V4HA 4Y9IA 3ZOHA 2R0XA 5BNCA 2FURA 4R82A 2QEAA 3TGVA 3GASA 2K4QA 3RH7A 2GUJA 3DMBA 1G77A 2QCKA 1G79A 4N7RC 4HMVA 1FLMA 1Y30A 2HTDA 2IABA 3U5WA 2OU5A 1XXOA 4YBNA 3A20A 2X1KA 1G78A 2ARZA 1I0SA 3NFWA 4UHVA 5CHEC 3K87A 4YWNA 4F07A 3K86A 4W64A 2IMLA 4XHYA 2OL5A 2AQ6A 1VL7A 5ESCA 3ZOFA 1USFA 4QVBA 2Q9KA 3BNKA 2D38A 1DNLA 1NRGA 1I0RA 2X1JA 3VYAA 1RZ1A 1EJEA 2ASFA 2D5MA 2VPAA 2PTFA 2D36A 1CI0A 3HY8A 3DNHA 3KYFA 3F7EA 3R5YA 4IRAA 4HMXA 3VY5A 1W3QA 2NR4A 2L1TA 2RE7A 3EC6A 1TY9A 3CB0A 3FKHA 1JNWA 3HE1A 1WLIA 3U0IA 4Z85A 3R5LA 4HMSA 4HMUA 3DB0A 3A6QA 3A6RA 3U35A 4HX6A 1W3PA 1Y12A 2FHQA 2E83A 3PFTA 3KYGA 4HMTA 3ZODA 1W9AA 2RDEA 1RZ0A 1YOAA 3R5RA 1G76A 1W3RA 2ED4A 1YLNA 3IN6A 2IG6A 3K88A 1WLKA 2HHZA 3AMFA 3HMZA 3E4VA 3FGEA 3R5PA 3H96A 1USCA 1RFEA 3VY2A 2R6VA
chains in the Genus database with same CATH topology
2GJGA 4ZKYA 5JABA 3BPKA 2A2JA 1T9MA 2HTIA 3ZOEA 2I02A 1AXJA 3AWHA 2HQ9A 3U34A 3BA3A 3CP3A 2HQ7A 3R5WA 4HMWA 1WV4A 2I51A 4L82A 4XJ2A 2ECRA 1XHNA 2FG9A 1WGBA 2ECUA 2D37A 3B5MA 3R5ZA 5CHOA 3ZOGA 1W3OA 3ZOCA 3SWJA 4Y9IA 3ZOHA 2R0XA 5BNCA 2FURA 4R82A 2QEAA 3TGVA 3GASA 3RH7A 3DMBA 1G77A 2QCKA 1G79A 4N7RC 4HMVA 1FLMA 1Y30A 2HTDA 2IABA 3U5WA 2OU5A 1XXOA 4YBNA 2X1KA 1G78A 2ARZA 1I0SA 3NFWA 5CHEC 3K87A 4YWNA 4F07A 3K86A 4XHYA 2IMLA 2OL5A 2AQ6A 1VL7A 5ESCA 3ZOFA 1USFA 4QVBA 2Q9KA 3BNKA 2D38A 1DNLA 1NRGA 1I0RA 2X1JA 3VYAA 1RZ1A 1EJEA 2ASFA 2D5MA 2VPAA 2PTFA 2D36A 1CI0A 3HY8A 3DNHA 3KYFA 3F7EA 3R5YA 4IRAA 4HMXA 3VY5A 1W3QA 2NR4A 2RE7A 3EC6A 1TY9A 3CB0A 3FKHA 1JNWA 2R6VA 1WLIA 3U0IA 4Z85A 3R5LA 4HMSA 4HMUA 3DB0A 3A6QA 3A6RA 3U35A 4HX6A 1W3PA 2FHQA 2E83A 3PFTA 3KYGA 4HMTA 3ZODA 1W9AA 2RDEA 1RZ0A 1YOAA 3R5RA 1G76A 1W3RA 2ED4A 1YLNA 3IN6A 2IG6A 3K88A 1WLKA 2HHZA 3AMFA 3HMZA 3E4VA 3FGEA 3R5PA 3H96A 1USCA 1RFEA 3VY2A 3A20A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GJG A;  4ZKY A;  5JAB A;  3BPK A;  2A2J A;  1T9M A;  2HTI A;  3ZOE A;  2I02 A;  1AXJ A;  3AWH A;  2HQ9 A;  3U34 A;  3BA3 A;  3CP3 A;  2HQ7 A;  3R5W A;  4HMW A;  1WV4 A;  2I51 A;  4L82 A;  4XJ2 A;  2ECR A;  1XHN A;  2FG9 A;  1WGB A;  2ECU A;  2D37 A;  3B5M A;  3R5Z A;  5CHO A;  3ZOG A;  1W3O A;  3ZOC A;  3SWJ A;  4Y9I A;  3ZOH A;  2R0X A;  5BNC A;  2FUR A;  4R82 A;  2QEA A;  3TGV A;  3GAS A;  3RH7 A;  3DMB A;  1G77 A;  2QCK A;  1G79 A;  4N7R C;  4HMV A;  1FLM A;  1Y30 A;  2HTD A;  2IAB A;  3U5W A;  2OU5 A;  1XXO A;  4YBN A;  2X1K A;  1G78 A;  2ARZ A;  1I0S A;  3NFW A;  5CHE C;  3K87 A;  4YWN A;  4F07 A;  3K86 A;  4XHY A;  2IML A;  2OL5 A;  2AQ6 A;  1VL7 A;  5ESC A;  3ZOF A;  1USF A;  4QVB A;  2Q9K A;  3BNK A;  2D38 A;  1DNL A;  1NRG A;  1I0R A;  2X1J A;  3VYA A;  1RZ1 A;  1EJE A;  2ASF A;  2D5M A;  2VPA A;  2PTF A;  2D36 A;  1CI0 A;  3HY8 A;  3DNH A;  3KYF A;  3F7E A;  3R5Y A;  4IRA A;  4HMX A;  3VY5 A;  1W3Q A;  2NR4 A;  2RE7 A;  3EC6 A;  1TY9 A;  3CB0 A;  3FKH A;  1JNW A;  2R6V A;  1WLI A;  3U0I A;  4Z85 A;  3R5L A;  4HMS A;  4HMU A;  3DB0 A;  3A6Q A;  3A6R A;  3U35 A;  4HX6 A;  1W3P A;  2FHQ A;  2E83 A;  3PFT A;  3KYG A;  4HMT A;  3ZOD A;  1W9A A;  2RDE A;  1RZ0 A;  1YOA A;  3R5R A;  1G76 A;  1W3R A;  2ED4 A;  1YLN A;  3IN6 A;  2IG6 A;  3K88 A;  1WLK A;  2HHZ A;  3AMF A;  3HMZ A;  3E4V A;  3FGE A;  3R5P A;  3H96 A;  1USC A;  1RFE A;  3VY2 A;  3A20 A; 
#chains in the Genus database with same CATH topology
 2GJG A;  4ZKY A;  5JAB A;  3BPK A;  4MTK A;  4TV4 A;  2A2J A;  1T9M A;  2HTI A;  3ZOE A;  2I02 A;  1AXJ A;  3AWH A;  2HQ9 A;  3U34 A;  3BA3 A;  2P5Z X;  3CP3 A;  2HQ7 A;  4HKH A;  3EAA A;  3R5W A;  4HMW A;  1WV4 A;  2I51 A;  4L82 A;  4XJ2 A;  2ECR A;  1XHN A;  2FG9 A;  1WGB A;  2ECU A;  2D37 A;  3B5M A;  3R5Z A;  5CHO A;  3ZOG A;  1W3O A;  3ZOC A;  3SWJ A;  3V4H A;  4Y9I A;  3ZOH A;  2R0X A;  5BNC A;  2FUR A;  4R82 A;  2QEA A;  3TGV A;  3GAS A;  2K4Q A;  3RH7 A;  2GUJ A;  3DMB A;  1G77 A;  2QCK A;  1G79 A;  4N7R C;  4HMV A;  1FLM A;  1Y30 A;  2HTD A;  2IAB A;  3U5W A;  2OU5 A;  1XXO A;  4YBN A;  3A20 A;  2X1K A;  1G78 A;  2ARZ A;  1I0S A;  3NFW A;  4UHV A;  5CHE C;  3K87 A;  4YWN A;  4F07 A;  3K86 A;  4W64 A;  2IML A;  4XHY A;  2OL5 A;  2AQ6 A;  1VL7 A;  5ESC A;  3ZOF A;  1USF A;  4QVB A;  2Q9K A;  3BNK A;  2D38 A;  1DNL A;  1NRG A;  1I0R A;  2X1J A;  3VYA A;  1RZ1 A;  1EJE A;  2ASF A;  2D5M A;  2VPA A;  2PTF A;  2D36 A;  1CI0 A;  3HY8 A;  3DNH A;  3KYF A;  3F7E A;  3R5Y A;  4IRA A;  4HMX A;  3VY5 A;  1W3Q A;  2NR4 A;  2L1T A;  2RE7 A;  3EC6 A;  1TY9 A;  3CB0 A;  3FKH A;  1JNW A;  3HE1 A;  1WLI A;  3U0I A;  4Z85 A;  3R5L A;  4HMS A;  4HMU A;  3DB0 A;  3A6Q A;  3A6R A;  3U35 A;  4HX6 A;  1W3P A;  1Y12 A;  2FHQ A;  2E83 A;  3PFT A;  3KYG A;  4HMT A;  3ZOD A;  1W9A A;  2RDE A;  1RZ0 A;  1YOA A;  3R5R A;  1G76 A;  1W3R A;  2ED4 A;  1YLN A;  3IN6 A;  2IG6 A;  3K88 A;  1WLK A;  2HHZ A;  3AMF A;  3HMZ A;  3E4V A;  3FGE A;  3R5P A;  3H96 A;  1USC A;  1RFE A;  3VY2 A;  2R6V A; 
#chains in the Genus database with same CATH homology
 2GJG A;  4ZKY A;  5JAB A;  3BPK A;  2A2J A;  1T9M A;  2HTI A;  3ZOE A;  2I02 A;  1AXJ A;  3AWH A;  2HQ9 A;  3U34 A;  3BA3 A;  3CP3 A;  2HQ7 A;  3R5W A;  4HMW A;  1WV4 A;  2I51 A;  4L82 A;  4XJ2 A;  2ECR A;  1XHN A;  2FG9 A;  1WGB A;  2ECU A;  2D37 A;  3B5M A;  3R5Z A;  5CHO A;  3ZOG A;  1W3O A;  3ZOC A;  3SWJ A;  4Y9I A;  3ZOH A;  2R0X A;  5BNC A;  2FUR A;  4R82 A;  2QEA A;  3TGV A;  3GAS A;  3RH7 A;  3DMB A;  1G77 A;  2QCK A;  1G79 A;  4N7R C;  4HMV A;  1FLM A;  1Y30 A;  2HTD A;  2IAB A;  3U5W A;  2OU5 A;  1XXO A;  4YBN A;  2X1K A;  1G78 A;  2ARZ A;  1I0S A;  3NFW A;  5CHE C;  3K87 A;  4YWN A;  4F07 A;  3K86 A;  4XHY A;  2IML A;  2OL5 A;  2AQ6 A;  1VL7 A;  5ESC A;  3ZOF A;  1USF A;  4QVB A;  2Q9K A;  3BNK A;  2D38 A;  1DNL A;  1NRG A;  1I0R A;  2X1J A;  3VYA A;  1RZ1 A;  1EJE A;  2ASF A;  2D5M A;  2VPA A;  2PTF A;  2D36 A;  1CI0 A;  3HY8 A;  3DNH A;  3KYF A;  3F7E A;  3R5Y A;  4IRA A;  4HMX A;  3VY5 A;  1W3Q A;  2NR4 A;  2RE7 A;  3EC6 A;  1TY9 A;  3CB0 A;  3FKH A;  1JNW A;  2R6V A;  1WLI A;  3U0I A;  4Z85 A;  3R5L A;  4HMS A;  4HMU A;  3DB0 A;  3A6Q A;  3A6R A;  3U35 A;  4HX6 A;  1W3P A;  2FHQ A;  2E83 A;  3PFT A;  3KYG A;  4HMT A;  3ZOD A;  1W9A A;  2RDE A;  1RZ0 A;  1YOA A;  3R5R A;  1G76 A;  1W3R A;  2ED4 A;  1YLN A;  3IN6 A;  2IG6 A;  3K88 A;  1WLK A;  2HHZ A;  3AMF A;  3HMZ A;  3E4V A;  3FGE A;  3R5P A;  3H96 A;  1USC A;  1RFE A;  3VY2 A;  3A20 A; 
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