1G77A

X-ray structure of escherichia coli pyridoxine 5`-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 a resolution
Total Genus 50
2040608010012014016018001020304050
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
199
structure length
199
Chain Sequence
GGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI6 (175-178)TVIII1 (28-31)AH1 (31-45)TI1 (49-52)TIV1 (47-50)TI2 (59-62)S1 (54-58)TIV2 (122-125)AH4 (153-167)S2 (64-67)TI3 (75-78)AH2 (88-95)S3 (81-84)TI4 (84-87)S4 (98-103)O1 (103-105)3H2 (106-108)S5 (110-120)3H3 (126-132)AH3 (135-143)TII1 (145-148)TI'1 (167-170)S7 (187-192)S6 (178-183)TII2 (194-197)TIV4 (185-188)TIV3 (169-172)3H1 (24-26)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Escherichia coli
publication title X-ray structure of Escherichia coli pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 A resolution.
pubmed doi rcsb
molecule keywords PYRIDOXINE 5`-PHOSPHATE OXIDASE
total genus 50
structure length 199
sequence length 199
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2000-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1g77A00
5JABA 3FKHA 3VYAA 3ZOGA 2GJGA 2A2JA 3BPKA 2ASFA 4XJ2A 1WLIA 3H96A 3CP3A 3U34A 3R5PA 3VY5A 1G77A 3U5WA 3RH7A 1T9MA 1RFEA 3GASA 1W3OA 2I02A 4HMXA 1JNWA 2HTIA 1EJEA 2I51A 4Z85A 1NRGA 1Y30A 2ECUA 1G78A 2R0XA 5BNCA 3HY8A 4L82A 4N7RC 2X1JA 2QEAA 1USFA 3U0IA 3ZOEA 3R5RA 3R5LA 5CHOA 2FHQA 4QVBA 1XXOA 2IABA 4IRAA 3ZOHA 2D5MA 1DNLA 2R6VA 3K88A 4HMTA 1RZ1A 2PTFA 3B5MA 2ED4A 4HX6A 3KYFA 3NFWA 3K86A 1XHNA 2HTDA 1W9AA 3R5WA 2QCKA 2X1KA 3FGEA 5CHEC 3VY2A 4XHYA 4R82A 1CI0A 2IMLA 2Q9KA 3DMBA 4F07A 2E83A 1W3QA 2D37A 3F7EA 3E4VA 3R5YA 2HQ7A 3ZOCA 4HMSA 4YWNA 2HQ9A 2HHZA 1USCA 2ARZA 4YBNA 1G79A 3ZODA 3DB0A 4HMWA 2VPAA 1AXJA 3CB0A 3PFTA 3K87A 2D38A 3BNKA 1VL7A 3A20A 3IN6A 1FLMA 2RDEA 1I0RA 3U35A 3HMZA 1G76A 2OU5A 2D36A 1TY9A 1YOAA 2IG6A 2AQ6A 3R5ZA 4HMVA 5ESCA 2FG9A 3BA3A 1RZ0A 1I0SA 3AWHA 2RE7A 1WGBA 1WV4A 4Y9IA 2FURA 1W3RA 3KYGA 3SWJA 3AMFA 3TGVA 3A6QA 1W3PA 2ECRA 3EC6A 3A6RA 4HMUA 3ZOFA 2OL5A 4ZKYA 1WLKA 2NR4A 3DNHA 1YLNA
chains in the Genus database with same CATH superfamily
5JABA 3FKHA 3VYAA 3ZOGA 2GJGA 2A2JA 3BPKA 2ASFA 4XJ2A 1WLIA 3H96A 3CP3A 3U34A 3R5PA 3VY5A 1G77A 3U5WA 3RH7A 1T9MA 1RFEA 3GASA 1W3OA 2I02A 4HMXA 1JNWA 2HTIA 1EJEA 2I51A 4Z85A 3HE1A 1NRGA 1Y30A 2ECUA 1G78A 2R0XA 5BNCA 3HY8A 4L82A 4N7RC 2X1JA 2QEAA 1USFA 3U0IA 3ZOEA 3R5RA 3R5LA 5CHOA 2FHQA 4QVBA 1XXOA 2IABA 4HKHA 4IRAA 3ZOHA 2D5MA 1DNLA 2R6VA 3K88A 4HMTA 1RZ1A 2PTFA 3B5MA 2ED4A 4HX6A 3KYFA 3NFWA 3K86A 1XHNA 2HTDA 1W9AA 3R5WA 2QCKA 2P5ZX 2X1KA 3FGEA 5CHEC 3VY2A 4XHYA 4R82A 1CI0A 2IMLA 2Q9KA 3DMBA 4F07A 2E83A 1W3QA 2D37A 3F7EA 3E4VA 3R5YA 4W64A 2HQ7A 3ZOCA 4HMSA 4YWNA 2HQ9A 2HHZA 1USCA 2ARZA 4YBNA 2L1TA 4UHVA 1G79A 2GUJA 3EAAA 3ZODA 3V4HA 3DB0A 4HMWA 2VPAA 1AXJA 3CB0A 3PFTA 3K87A 2D38A 3BNKA 1VL7A 3A20A 4MTKA 3IN6A 1FLMA 2RDEA 1I0RA 3U35A 3HMZA 1G76A 2OU5A 2D36A 1TY9A 1YOAA 2IG6A 2AQ6A 3R5ZA 4HMVA 5ESCA 2FG9A 3BA3A 1RZ0A 1I0SA 3AWHA 2RE7A 1WGBA 1WV4A 1Y12A 4Y9IA 2FURA 1W3RA 4TV4A 3KYGA 3SWJA 3AMFA 3TGVA 3A6QA 1W3PA 2ECRA 3EC6A 3A6RA 4HMUA 3ZOFA 2OL5A 4ZKYA 1WLKA 2NR4A 2K4QA 3DNHA 1YLNA
chains in the Genus database with same CATH topology
5JABA 3FKHA 3VYAA 3ZOGA 2GJGA 2A2JA 3BPKA 2ASFA 4XJ2A 1WLIA 3H96A 3CP3A 3U34A 3R5PA 3VY5A 1G77A 3U5WA 3RH7A 1T9MA 1RFEA 3GASA 1W3OA 2I02A 4HMXA 1JNWA 2HTIA 1EJEA 2I51A 4Z85A 1NRGA 1Y30A 2ECUA 1G78A 2R0XA 5BNCA 3HY8A 4L82A 4N7RC 2X1JA 2QEAA 1USFA 3U0IA 3ZOEA 3R5RA 3R5LA 5CHOA 2FHQA 4QVBA 1XXOA 2IABA 4IRAA 3ZOHA 2D5MA 1DNLA 2R6VA 3K88A 4HMTA 1RZ1A 2PTFA 3B5MA 2ED4A 4HX6A 3KYFA 3NFWA 3K86A 1XHNA 2HTDA 1W9AA 3R5WA 2QCKA 2X1KA 3FGEA 5CHEC 3VY2A 4XHYA 4R82A 1CI0A 2IMLA 2Q9KA 3DMBA 4F07A 2E83A 1W3QA 2D37A 3F7EA 3E4VA 3R5YA 2HQ7A 3ZOCA 4HMSA 4YWNA 2HQ9A 2HHZA 1USCA 2ARZA 4YBNA 1G79A 3ZODA 3DB0A 4HMWA 2VPAA 1AXJA 3CB0A 3PFTA 3K87A 2D38A 3BNKA 1VL7A 3A20A 3IN6A 1FLMA 2RDEA 1I0RA 3U35A 3HMZA 1G76A 2OU5A 2D36A 1TY9A 1YOAA 2IG6A 2AQ6A 3R5ZA 4HMVA 5ESCA 2FG9A 3BA3A 1RZ0A 1I0SA 3AWHA 2RE7A 1WGBA 1WV4A 4Y9IA 2FURA 1W3RA 3KYGA 3SWJA 3AMFA 3TGVA 3A6QA 1W3PA 2ECRA 3EC6A 3A6RA 4HMUA 3ZOFA 2OL5A 4ZKYA 1WLKA 2NR4A 3DNHA 1YLNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JAB A;  3FKH A;  3VYA A;  3ZOG A;  2GJG A;  2A2J A;  3BPK A;  2ASF A;  4XJ2 A;  1WLI A;  3H96 A;  3CP3 A;  3U34 A;  3R5P A;  3VY5 A;  1G77 A;  3U5W A;  3RH7 A;  1T9M A;  1RFE A;  3GAS A;  1W3O A;  2I02 A;  4HMX A;  1JNW A;  2HTI A;  1EJE A;  2I51 A;  4Z85 A;  1NRG A;  1Y30 A;  2ECU A;  1G78 A;  2R0X A;  5BNC A;  3HY8 A;  4L82 A;  4N7R C;  2X1J A;  2QEA A;  1USF A;  3U0I A;  3ZOE A;  3R5R A;  3R5L A;  5CHO A;  2FHQ A;  4QVB A;  1XXO A;  2IAB A;  4IRA A;  3ZOH A;  2D5M A;  1DNL A;  2R6V A;  3K88 A;  4HMT A;  1RZ1 A;  2PTF A;  3B5M A;  2ED4 A;  4HX6 A;  3KYF A;  3NFW A;  3K86 A;  1XHN A;  2HTD A;  1W9A A;  3R5W A;  2QCK A;  2X1K A;  3FGE A;  5CHE C;  3VY2 A;  4XHY A;  4R82 A;  1CI0 A;  2IML A;  2Q9K A;  3DMB A;  4F07 A;  2E83 A;  1W3Q A;  2D37 A;  3F7E A;  3E4V A;  3R5Y A;  2HQ7 A;  3ZOC A;  4HMS A;  4YWN A;  2HQ9 A;  2HHZ A;  1USC A;  2ARZ A;  4YBN A;  1G79 A;  3ZOD A;  3DB0 A;  4HMW A;  2VPA A;  1AXJ A;  3CB0 A;  3PFT A;  3K87 A;  2D38 A;  3BNK A;  1VL7 A;  3A20 A;  3IN6 A;  1FLM A;  2RDE A;  1I0R A;  3U35 A;  3HMZ A;  1G76 A;  2OU5 A;  2D36 A;  1TY9 A;  1YOA A;  2IG6 A;  2AQ6 A;  3R5Z A;  4HMV A;  5ESC A;  2FG9 A;  3BA3 A;  1RZ0 A;  1I0S A;  3AWH A;  2RE7 A;  1WGB A;  1WV4 A;  4Y9I A;  2FUR A;  1W3R A;  3KYG A;  3SWJ A;  3AMF A;  3TGV A;  3A6Q A;  1W3P A;  2ECR A;  3EC6 A;  3A6R A;  4HMU A;  3ZOF A;  2OL5 A;  4ZKY A;  1WLK A;  2NR4 A;  3DNH A;  1YLN A; 
#chains in the Genus database with same CATH topology
 5JAB A;  3FKH A;  3VYA A;  3ZOG A;  2GJG A;  2A2J A;  3BPK A;  2ASF A;  4XJ2 A;  1WLI A;  3H96 A;  3CP3 A;  3U34 A;  3R5P A;  3VY5 A;  1G77 A;  3U5W A;  3RH7 A;  1T9M A;  1RFE A;  3GAS A;  1W3O A;  2I02 A;  4HMX A;  1JNW A;  2HTI A;  1EJE A;  2I51 A;  4Z85 A;  3HE1 A;  1NRG A;  1Y30 A;  2ECU A;  1G78 A;  2R0X A;  5BNC A;  3HY8 A;  4L82 A;  4N7R C;  2X1J A;  2QEA A;  1USF A;  3U0I A;  3ZOE A;  3R5R A;  3R5L A;  5CHO A;  2FHQ A;  4QVB A;  1XXO A;  2IAB A;  4HKH A;  4IRA A;  3ZOH A;  2D5M A;  1DNL A;  2R6V A;  3K88 A;  4HMT A;  1RZ1 A;  2PTF A;  3B5M A;  2ED4 A;  4HX6 A;  3KYF A;  3NFW A;  3K86 A;  1XHN A;  2HTD A;  1W9A A;  3R5W A;  2QCK A;  2P5Z X;  2X1K A;  3FGE A;  5CHE C;  3VY2 A;  4XHY A;  4R82 A;  1CI0 A;  2IML A;  2Q9K A;  3DMB A;  4F07 A;  2E83 A;  1W3Q A;  2D37 A;  3F7E A;  3E4V A;  3R5Y A;  4W64 A;  2HQ7 A;  3ZOC A;  4HMS A;  4YWN A;  2HQ9 A;  2HHZ A;  1USC A;  2ARZ A;  4YBN A;  2L1T A;  4UHV A;  1G79 A;  2GUJ A;  3EAA A;  3ZOD A;  3V4H A;  3DB0 A;  4HMW A;  2VPA A;  1AXJ A;  3CB0 A;  3PFT A;  3K87 A;  2D38 A;  3BNK A;  1VL7 A;  3A20 A;  4MTK A;  3IN6 A;  1FLM A;  2RDE A;  1I0R A;  3U35 A;  3HMZ A;  1G76 A;  2OU5 A;  2D36 A;  1TY9 A;  1YOA A;  2IG6 A;  2AQ6 A;  3R5Z A;  4HMV A;  5ESC A;  2FG9 A;  3BA3 A;  1RZ0 A;  1I0S A;  3AWH A;  2RE7 A;  1WGB A;  1WV4 A;  1Y12 A;  4Y9I A;  2FUR A;  1W3R A;  4TV4 A;  3KYG A;  3SWJ A;  3AMF A;  3TGV A;  3A6Q A;  1W3P A;  2ECR A;  3EC6 A;  3A6R A;  4HMU A;  3ZOF A;  2OL5 A;  4ZKY A;  1WLK A;  2NR4 A;  2K4Q A;  3DNH A;  1YLN A; 
#chains in the Genus database with same CATH homology
 5JAB A;  3FKH A;  3VYA A;  3ZOG A;  2GJG A;  2A2J A;  3BPK A;  2ASF A;  4XJ2 A;  1WLI A;  3H96 A;  3CP3 A;  3U34 A;  3R5P A;  3VY5 A;  1G77 A;  3U5W A;  3RH7 A;  1T9M A;  1RFE A;  3GAS A;  1W3O A;  2I02 A;  4HMX A;  1JNW A;  2HTI A;  1EJE A;  2I51 A;  4Z85 A;  1NRG A;  1Y30 A;  2ECU A;  1G78 A;  2R0X A;  5BNC A;  3HY8 A;  4L82 A;  4N7R C;  2X1J A;  2QEA A;  1USF A;  3U0I A;  3ZOE A;  3R5R A;  3R5L A;  5CHO A;  2FHQ A;  4QVB A;  1XXO A;  2IAB A;  4IRA A;  3ZOH A;  2D5M A;  1DNL A;  2R6V A;  3K88 A;  4HMT A;  1RZ1 A;  2PTF A;  3B5M A;  2ED4 A;  4HX6 A;  3KYF A;  3NFW A;  3K86 A;  1XHN A;  2HTD A;  1W9A A;  3R5W A;  2QCK A;  2X1K A;  3FGE A;  5CHE C;  3VY2 A;  4XHY A;  4R82 A;  1CI0 A;  2IML A;  2Q9K A;  3DMB A;  4F07 A;  2E83 A;  1W3Q A;  2D37 A;  3F7E A;  3E4V A;  3R5Y A;  2HQ7 A;  3ZOC A;  4HMS A;  4YWN A;  2HQ9 A;  2HHZ A;  1USC A;  2ARZ A;  4YBN A;  1G79 A;  3ZOD A;  3DB0 A;  4HMW A;  2VPA A;  1AXJ A;  3CB0 A;  3PFT A;  3K87 A;  2D38 A;  3BNK A;  1VL7 A;  3A20 A;  3IN6 A;  1FLM A;  2RDE A;  1I0R A;  3U35 A;  3HMZ A;  1G76 A;  2OU5 A;  2D36 A;  1TY9 A;  1YOA A;  2IG6 A;  2AQ6 A;  3R5Z A;  4HMV A;  5ESC A;  2FG9 A;  3BA3 A;  1RZ0 A;  1I0S A;  3AWH A;  2RE7 A;  1WGB A;  1WV4 A;  4Y9I A;  2FUR A;  1W3R A;  3KYG A;  3SWJ A;  3AMF A;  3TGV A;  3A6Q A;  1W3P A;  2ECR A;  3EC6 A;  3A6R A;  4HMU A;  3ZOF A;  2OL5 A;  4ZKY A;  1WLK A;  2NR4 A;  3DNH A;  1YLN A; 
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