1G79A

X-ray structure of escherichia coli pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 a resolution
Total Genus 54
2040608010012014016018001020304050
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
199
structure length
199
Chain Sequence
GGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIII1 (28-31)AH1 (31-45)TI4 (84-87)S1 (52-59)S3 (73-75)TIV1 (47-50)S6 (110-120)AH5 (153-167)TI3 (75-78)S4 (78-84)S5 (98-105)AH2 (88-95)TIV2 (167-170)3H2 (106-108)TII1 (145-148)AH3 (123-131)S8 (187-192)TVIII2 (185-188)S7 (178-183)TI2 (59-62)S2 (63-70)AH4 (135-143)3H3 (195-197)TI5 (175-178)3H1 (24-26)Updating...
connected with : NaN
publication title X-ray structure of Escherichia coli pyridoxine 5'-phosphate oxidase complexed with pyridoxal 5'-phosphate at 2.0 A resolution.
pubmed doi rcsb
molecule keywords PYRIDOXINE 5'-PHOSPHATE OXIDASE
molecule tags Oxidoreductase
source organism Escherichia coli
total genus 54
structure length 199
sequence length 199
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2000-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1g79A00
3DB0A 2HHZA 2HTDA 1W9AA 3R5PA 3ZOHA 3EC6A 1DNLA 3KYFA 4R82A 1JNWA 2E83A 2OL5A 2X1JA 3VYAA 5BNCA 2FURA 2NR4A 3B5MA 3AWHA 4Y9IA 1EJEA 3CB0A 3E4VA 4HMUA 3ZOCA 3R5WA 3A6RA 3R5ZA 5CHOA 3K87A 1XHNA 3GASA 2FG9A 2IMLA 3ZOFA 2D37A 1I0SA 3ZODA 2I51A 1Y30A 3RH7A 1G78A 3R5YA 1WLKA 2PTFA 3VY2A 3U35A 1AXJA 3ZOGA 2RDEA 2AQ6A 3A20A 3R5LA 2Q9KA 1USCA 4N7RC 1W3QA 3ZOEA 2R0XA 2HQ9A 3KYGA 5JABA 3H96A 2QEAA 1CI0A 1RFEA 3BA3A 2RE7A 1TY9A 1YLNA 2QCKA 3CP3A 3U0IA 2GJGA 2IG6A 4XHYA 3SWJA 2VPAA 3AMFA 3PFTA 2IABA 2X1KA 4ZKYA 1WGBA 4F07A 3DMBA 1NRGA 4L82A 3FKHA 2ARZA 1T9MA 2ED4A 5ESCA 1USFA 2ECRA 2D36A 1G77A 3K88A 1XXOA 2FHQA 1W3RA 3U5WA 4HX6A 4QVBA 3R5RA 2I02A 2OU5A 1G76A 4HMVA 3HY8A 3U34A 1G79A 3A6QA 3NFWA 3BPKA 1FLMA 4HMXA 1I0RA 2ECUA 2ASFA 2R6VA 3FGEA 1WLIA 1YOAA 1W3PA 4IRAA 1RZ0A 4XJ2A 5CHEC 2D38A 4Z85A 2HTIA 2D5MA 3DNHA 3K86A 3F7EA 1VL7A 2HQ7A 3BNKA 1RZ1A 3VY5A 4YBNA 3HMZA 3TGVA 1W3OA 4HMWA 2A2JA 4HMTA 4HMSA 3IN6A 4YWNA 1WV4A
chains in the Genus database with same CATH superfamily
3HE1A 3DB0A 2HHZA 2HTDA 1W9AA 3R5PA 3ZOHA 3EC6A 1DNLA 3EAAA 3KYFA 4R82A 1JNWA 2L1TA 2E83A 2OL5A 2X1JA 3VYAA 5BNCA 2FURA 2NR4A 3B5MA 3AWHA 4Y9IA 1EJEA 3CB0A 3E4VA 1Y12A 4HMUA 3R5WA 3ZOCA 4UHVA 3A6RA 3R5ZA 5CHOA 3K87A 1XHNA 3GASA 2FG9A 2IMLA 3ZOFA 2D37A 1I0SA 3ZODA 2I51A 1Y30A 3RH7A 1G78A 3R5YA 2P5ZX 1WLKA 2PTFA 4HKHA 3VY2A 3U35A 1AXJA 3ZOGA 2RDEA 2AQ6A 3A20A 3R5LA 2Q9KA 1USCA 4N7RC 1W3QA 3ZOEA 2R0XA 3V4HA 2HQ9A 3KYGA 5JABA 3H96A 2QEAA 1CI0A 1RFEA 3BA3A 2RE7A 1TY9A 1YLNA 2QCKA 3CP3A 3U0IA 2GJGA 2IG6A 4XHYA 3SWJA 2VPAA 3AMFA 3PFTA 2IABA 2X1KA 4ZKYA 4W64A 1WGBA 4F07A 3DMBA 1NRGA 4L82A 3FKHA 2ARZA 1T9MA 2K4QA 2ED4A 5ESCA 1USFA 2ECRA 2D36A 1G77A 3K88A 1XXOA 2FHQA 1W3RA 3U5WA 4HX6A 4QVBA 3R5RA 2I02A 2OU5A 1G76A 4HMVA 3HY8A 3U34A 1G79A 3A6QA 3NFWA 3BPKA 1FLMA 4HMXA 1I0RA 2ECUA 2ASFA 4MTKA 2R6VA 3FGEA 1WLIA 1YOAA 1W3PA 4IRAA 1RZ0A 4XJ2A 5CHEC 2D38A 4Z85A 2HTIA 2D5MA 3DNHA 3K86A 3F7EA 1VL7A 2HQ7A 4TV4A 3BNKA 1RZ1A 3VY5A 4YBNA 3HMZA 3TGVA 2GUJA 1W3OA 4HMWA 2A2JA 4HMTA 4HMSA 3IN6A 4YWNA 1WV4A
chains in the Genus database with same CATH topology
3DB0A 2HHZA 2HTDA 1W9AA 3R5PA 3ZOHA 3EC6A 1DNLA 3KYFA 4R82A 1JNWA 2E83A 2OL5A 2X1JA 3VYAA 5BNCA 2FURA 2NR4A 3B5MA 3AWHA 4Y9IA 1EJEA 3CB0A 3E4VA 4HMUA 3ZOCA 3R5WA 3A6RA 3R5ZA 5CHOA 3K87A 1XHNA 3GASA 2FG9A 2IMLA 3ZOFA 2D37A 1I0SA 3ZODA 2I51A 1Y30A 3RH7A 1G78A 3R5YA 1WLKA 2PTFA 3VY2A 3U35A 1AXJA 3ZOGA 2RDEA 2AQ6A 3A20A 3R5LA 2Q9KA 1USCA 4N7RC 1W3QA 3ZOEA 2R0XA 2HQ9A 3KYGA 5JABA 3H96A 2QEAA 1CI0A 1RFEA 3BA3A 2RE7A 1TY9A 1YLNA 2QCKA 3CP3A 3U0IA 2GJGA 2IG6A 4XHYA 3SWJA 2VPAA 3AMFA 3PFTA 2IABA 2X1KA 4ZKYA 1WGBA 4F07A 3DMBA 1NRGA 4L82A 3FKHA 2ARZA 1T9MA 2ED4A 5ESCA 1USFA 2ECRA 2D36A 1G77A 3K88A 1XXOA 2FHQA 1W3RA 3U5WA 4HX6A 4QVBA 3R5RA 2I02A 2OU5A 1G76A 4HMVA 3HY8A 3U34A 1G79A 3A6QA 3NFWA 3BPKA 1FLMA 4HMXA 1I0RA 2ECUA 2ASFA 2R6VA 3FGEA 1WLIA 1YOAA 1W3PA 4IRAA 1RZ0A 4XJ2A 5CHEC 2D38A 4Z85A 2HTIA 2D5MA 3DNHA 3K86A 3F7EA 1VL7A 2HQ7A 3BNKA 1RZ1A 3VY5A 4YBNA 3HMZA 3TGVA 1W3OA 4HMWA 2A2JA 4HMTA 4HMSA 3IN6A 4YWNA 1WV4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DB0 A;  2HHZ A;  2HTD A;  1W9A A;  3R5P A;  3ZOH A;  3EC6 A;  1DNL A;  3KYF A;  4R82 A;  1JNW A;  2E83 A;  2OL5 A;  2X1J A;  3VYA A;  5BNC A;  2FUR A;  2NR4 A;  3B5M A;  3AWH A;  4Y9I A;  1EJE A;  3CB0 A;  3E4V A;  4HMU A;  3ZOC A;  3R5W A;  3A6R A;  3R5Z A;  5CHO A;  3K87 A;  1XHN A;  3GAS A;  2FG9 A;  2IML A;  3ZOF A;  2D37 A;  1I0S A;  3ZOD A;  2I51 A;  1Y30 A;  3RH7 A;  1G78 A;  3R5Y A;  1WLK A;  2PTF A;  3VY2 A;  3U35 A;  1AXJ A;  3ZOG A;  2RDE A;  2AQ6 A;  3A20 A;  3R5L A;  2Q9K A;  1USC A;  4N7R C;  1W3Q A;  3ZOE A;  2R0X A;  2HQ9 A;  3KYG A;  5JAB A;  3H96 A;  2QEA A;  1CI0 A;  1RFE A;  3BA3 A;  2RE7 A;  1TY9 A;  1YLN A;  2QCK A;  3CP3 A;  3U0I A;  2GJG A;  2IG6 A;  4XHY A;  3SWJ A;  2VPA A;  3AMF A;  3PFT A;  2IAB A;  2X1K A;  4ZKY A;  1WGB A;  4F07 A;  3DMB A;  1NRG A;  4L82 A;  3FKH A;  2ARZ A;  1T9M A;  2ED4 A;  5ESC A;  1USF A;  2ECR A;  2D36 A;  1G77 A;  3K88 A;  1XXO A;  2FHQ A;  1W3R A;  3U5W A;  4HX6 A;  4QVB A;  3R5R A;  2I02 A;  2OU5 A;  1G76 A;  4HMV A;  3HY8 A;  3U34 A;  1G79 A;  3A6Q A;  3NFW A;  3BPK A;  1FLM A;  4HMX A;  1I0R A;  2ECU A;  2ASF A;  2R6V A;  3FGE A;  1WLI A;  1YOA A;  1W3P A;  4IRA A;  1RZ0 A;  4XJ2 A;  5CHE C;  2D38 A;  4Z85 A;  2HTI A;  2D5M A;  3DNH A;  3K86 A;  3F7E A;  1VL7 A;  2HQ7 A;  3BNK A;  1RZ1 A;  3VY5 A;  4YBN A;  3HMZ A;  3TGV A;  1W3O A;  4HMW A;  2A2J A;  4HMT A;  4HMS A;  3IN6 A;  4YWN A;  1WV4 A; 
#chains in the Genus database with same CATH topology
 3HE1 A;  3DB0 A;  2HHZ A;  2HTD A;  1W9A A;  3R5P A;  3ZOH A;  3EC6 A;  1DNL A;  3EAA A;  3KYF A;  4R82 A;  1JNW A;  2L1T A;  2E83 A;  2OL5 A;  2X1J A;  3VYA A;  5BNC A;  2FUR A;  2NR4 A;  3B5M A;  3AWH A;  4Y9I A;  1EJE A;  3CB0 A;  3E4V A;  1Y12 A;  4HMU A;  3R5W A;  3ZOC A;  4UHV A;  3A6R A;  3R5Z A;  5CHO A;  3K87 A;  1XHN A;  3GAS A;  2FG9 A;  2IML A;  3ZOF A;  2D37 A;  1I0S A;  3ZOD A;  2I51 A;  1Y30 A;  3RH7 A;  1G78 A;  3R5Y A;  2P5Z X;  1WLK A;  2PTF A;  4HKH A;  3VY2 A;  3U35 A;  1AXJ A;  3ZOG A;  2RDE A;  2AQ6 A;  3A20 A;  3R5L A;  2Q9K A;  1USC A;  4N7R C;  1W3Q A;  3ZOE A;  2R0X A;  3V4H A;  2HQ9 A;  3KYG A;  5JAB A;  3H96 A;  2QEA A;  1CI0 A;  1RFE A;  3BA3 A;  2RE7 A;  1TY9 A;  1YLN A;  2QCK A;  3CP3 A;  3U0I A;  2GJG A;  2IG6 A;  4XHY A;  3SWJ A;  2VPA A;  3AMF A;  3PFT A;  2IAB A;  2X1K A;  4ZKY A;  4W64 A;  1WGB A;  4F07 A;  3DMB A;  1NRG A;  4L82 A;  3FKH A;  2ARZ A;  1T9M A;  2K4Q A;  2ED4 A;  5ESC A;  1USF A;  2ECR A;  2D36 A;  1G77 A;  3K88 A;  1XXO A;  2FHQ A;  1W3R A;  3U5W A;  4HX6 A;  4QVB A;  3R5R A;  2I02 A;  2OU5 A;  1G76 A;  4HMV A;  3HY8 A;  3U34 A;  1G79 A;  3A6Q A;  3NFW A;  3BPK A;  1FLM A;  4HMX A;  1I0R A;  2ECU A;  2ASF A;  4MTK A;  2R6V A;  3FGE A;  1WLI A;  1YOA A;  1W3P A;  4IRA A;  1RZ0 A;  4XJ2 A;  5CHE C;  2D38 A;  4Z85 A;  2HTI A;  2D5M A;  3DNH A;  3K86 A;  3F7E A;  1VL7 A;  2HQ7 A;  4TV4 A;  3BNK A;  1RZ1 A;  3VY5 A;  4YBN A;  3HMZ A;  3TGV A;  2GUJ A;  1W3O A;  4HMW A;  2A2J A;  4HMT A;  4HMS A;  3IN6 A;  4YWN A;  1WV4 A; 
#chains in the Genus database with same CATH homology
 3DB0 A;  2HHZ A;  2HTD A;  1W9A A;  3R5P A;  3ZOH A;  3EC6 A;  1DNL A;  3KYF A;  4R82 A;  1JNW A;  2E83 A;  2OL5 A;  2X1J A;  3VYA A;  5BNC A;  2FUR A;  2NR4 A;  3B5M A;  3AWH A;  4Y9I A;  1EJE A;  3CB0 A;  3E4V A;  4HMU A;  3ZOC A;  3R5W A;  3A6R A;  3R5Z A;  5CHO A;  3K87 A;  1XHN A;  3GAS A;  2FG9 A;  2IML A;  3ZOF A;  2D37 A;  1I0S A;  3ZOD A;  2I51 A;  1Y30 A;  3RH7 A;  1G78 A;  3R5Y A;  1WLK A;  2PTF A;  3VY2 A;  3U35 A;  1AXJ A;  3ZOG A;  2RDE A;  2AQ6 A;  3A20 A;  3R5L A;  2Q9K A;  1USC A;  4N7R C;  1W3Q A;  3ZOE A;  2R0X A;  2HQ9 A;  3KYG A;  5JAB A;  3H96 A;  2QEA A;  1CI0 A;  1RFE A;  3BA3 A;  2RE7 A;  1TY9 A;  1YLN A;  2QCK A;  3CP3 A;  3U0I A;  2GJG A;  2IG6 A;  4XHY A;  3SWJ A;  2VPA A;  3AMF A;  3PFT A;  2IAB A;  2X1K A;  4ZKY A;  1WGB A;  4F07 A;  3DMB A;  1NRG A;  4L82 A;  3FKH A;  2ARZ A;  1T9M A;  2ED4 A;  5ESC A;  1USF A;  2ECR A;  2D36 A;  1G77 A;  3K88 A;  1XXO A;  2FHQ A;  1W3R A;  3U5W A;  4HX6 A;  4QVB A;  3R5R A;  2I02 A;  2OU5 A;  1G76 A;  4HMV A;  3HY8 A;  3U34 A;  1G79 A;  3A6Q A;  3NFW A;  3BPK A;  1FLM A;  4HMX A;  1I0R A;  2ECU A;  2ASF A;  2R6V A;  3FGE A;  1WLI A;  1YOA A;  1W3P A;  4IRA A;  1RZ0 A;  4XJ2 A;  5CHE C;  2D38 A;  4Z85 A;  2HTI A;  2D5M A;  3DNH A;  3K86 A;  3F7E A;  1VL7 A;  2HQ7 A;  3BNK A;  1RZ1 A;  3VY5 A;  4YBN A;  3HMZ A;  3TGV A;  1W3O A;  4HMW A;  2A2J A;  4HMT A;  4HMS A;  3IN6 A;  4YWN A;  1WV4 A; 
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