1NRGA

Structure and properties of recombinant human pyridoxine-5'-phosphate oxidase
Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
213
structure length
213
Chain Sequence
EETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI6 (203-206)TIV1 (50-53)S4 (106-112)AH1 (58-71)TIV2 (55-58)AH4 (163-171)TI1 (72-75)TVIII1 (75-78)S2 (91-98)TI2 (77-80)TI3 (87-90)TII1 (173-176)TI5 (112-115)AH2 (116-123)S6 (138-148)O1 (124-126)S5 (126-133)3H1 (134-136)AH5 (181-195)TII2 (195-198)S7 (206-211)S1 (80-87)AH3 (151-160)S3 (101-103)TI4 (103-106)Updating...
connected with : NaN
publication title Structure and properties of recombinant human pyridoxine 5'-phosphate oxidase.
pubmed doi rcsb
molecule keywords pyridoxine 5'-phosphate oxidase
molecule tags Oxidoreductase
source organism Homo sapiens
total genus 57
structure length 213
sequence length 213
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2003-01-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1nrgA00
3A6RA 3HY8A 3CP3A 2QCKA 2GJGA 1I0RA 1AXJA 3U0IA 4XHYA 3VY2A 5CHOA 2HHZA 3VY5A 1RZ0A 2HQ9A 3DNHA 2IABA 3K88A 2Q9KA 3KYGA 3K87A 1G77A 5JABA 2ASFA 3A20A 4R82A 5BNCA 3EC6A 4HMTA 3ZOFA 1DNLA 3U5WA 1W3QA 4YBNA 3R5WA 1YLNA 3IN6A 2D37A 3BPKA 1W3RA 1WLKA 5ESCA 3AMFA 3GASA 3VYAA 1G76A 1EJEA 2ED4A 3ZOCA 2I02A 2HTDA 3R5PA 4Z85A 3U34A 4L82A 2R0XA 3AWHA 4F07A 3HMZA 2D5MA 1FLMA 2I51A 2IMLA 4HMXA 4HX6A 2RDEA 4XJ2A 1XHNA 2D38A 3K86A 2AQ6A 2QEAA 1JNWA 3DB0A 3RH7A 1NRGA 3PFTA 3F7EA 2FURA 3ZOEA 3NFWA 3B5MA 1XXOA 2NR4A 3FKHA 1W3OA 3TGVA 1W9AA 2RE7A 2VPAA 1RFEA 4HMVA 2E83A 1W3PA 2PTFA 2FHQA 1USFA 5CHEC 2D36A 1WLIA 2ARZA 2X1KA 3H96A 4HMSA 4HMWA 4ZKYA 2X1JA 1I0SA 4IRAA 3R5ZA 1G78A 3R5LA 4Y9IA 2HTIA 3ZODA 3E4VA 4QVBA 1WGBA 1WV4A 2HQ7A 2OL5A 1CI0A 1G79A 3BA3A 2ECRA 3KYFA 3ZOGA 4N7RC 1RZ1A 1USCA 1Y30A 2R6VA 3DMBA 4HMUA 3SWJA 3CB0A 2OU5A 3A6QA 1VL7A 2A2JA 2ECUA 3R5RA 3ZOHA 3R5YA 3FGEA 3BNKA 4YWNA 3U35A 1YOAA 2IG6A 1T9MA 2FG9A 1TY9A
chains in the Genus database with same CATH superfamily
3A6RA 3HY8A 3CP3A 2QCKA 2GJGA 1I0RA 1AXJA 3HE1A 3U0IA 4XHYA 3VY2A 5CHOA 2HHZA 4HKHA 1RZ0A 2HQ9A 3VY5A 3DNHA 2IABA 3K88A 2K4QA 2Q9KA 3KYGA 3K87A 1G77A 5JABA 2ASFA 3A20A 4R82A 5BNCA 3EC6A 4HMTA 3ZOFA 1DNLA 3U5WA 1W3QA 4YBNA 3R5WA 1YLNA 3IN6A 2D37A 3BPKA 1W3RA 1WLKA 4MTKA 5ESCA 3AMFA 3GASA 3VYAA 1G76A 3EAAA 1EJEA 2ED4A 3ZOCA 2I02A 2HTDA 3R5PA 4Z85A 3U34A 4L82A 2R0XA 3AWHA 4F07A 3HMZA 2D5MA 1FLMA 2I51A 2IMLA 4HMXA 4HX6A 2RDEA 4XJ2A 1XHNA 4UHVA 2D38A 3K86A 2AQ6A 2QEAA 1JNWA 3DB0A 3RH7A 1NRGA 3PFTA 3F7EA 2FURA 1Y12A 3ZOEA 4W64A 3NFWA 3B5MA 1XXOA 2NR4A 3FKHA 1W3OA 3TGVA 1W9AA 2RE7A 2VPAA 1RFEA 4HMVA 2E83A 1W3PA 2PTFA 2FHQA 1USFA 5CHEC 2P5ZX 2D36A 1WLIA 2ARZA 2X1KA 3H96A 4TV4A 4HMSA 2GUJA 4HMWA 4ZKYA 2X1JA 1I0SA 4IRAA 3R5ZA 1G78A 3R5LA 4Y9IA 2HTIA 3ZODA 3E4VA 4QVBA 1WGBA 1WV4A 2HQ7A 2OL5A 1CI0A 1G79A 3BA3A 2ECRA 3KYFA 3ZOGA 4N7RC 1RZ1A 1USCA 1Y30A 2R6VA 3DMBA 4HMUA 3SWJA 3CB0A 2OU5A 3A6QA 1VL7A 2A2JA 2ECUA 3R5RA 3ZOHA 2L1TA 3R5YA 3FGEA 3BNKA 4YWNA 3V4HA 3U35A 1YOAA 2IG6A 1T9MA 2FG9A 1TY9A
chains in the Genus database with same CATH topology
3A6RA 3HY8A 3CP3A 2QCKA 2GJGA 1I0RA 1AXJA 3U0IA 4XHYA 3VY2A 5CHOA 2HHZA 3VY5A 1RZ0A 2HQ9A 3DNHA 2IABA 3K88A 2Q9KA 3KYGA 3K87A 1G77A 5JABA 2ASFA 3A20A 4R82A 5BNCA 3EC6A 4HMTA 3ZOFA 1DNLA 3U5WA 1W3QA 4YBNA 3R5WA 1YLNA 3IN6A 2D37A 3BPKA 1W3RA 1WLKA 5ESCA 3AMFA 3GASA 3VYAA 1G76A 1EJEA 2ED4A 3ZOCA 2I02A 2HTDA 3R5PA 4Z85A 3U34A 4L82A 2R0XA 3AWHA 4F07A 3HMZA 2D5MA 1FLMA 2I51A 2IMLA 4HMXA 4HX6A 2RDEA 4XJ2A 1XHNA 2D38A 3K86A 2AQ6A 2QEAA 1JNWA 3DB0A 3RH7A 1NRGA 3PFTA 3F7EA 2FURA 3ZOEA 3NFWA 3B5MA 1XXOA 2NR4A 3FKHA 1W3OA 3TGVA 1W9AA 2RE7A 2VPAA 1RFEA 4HMVA 2E83A 1W3PA 2PTFA 2FHQA 1USFA 5CHEC 2D36A 1WLIA 2ARZA 2X1KA 3H96A 4HMSA 4HMWA 4ZKYA 2X1JA 1I0SA 4IRAA 3R5ZA 1G78A 3R5LA 4Y9IA 2HTIA 3ZODA 3E4VA 4QVBA 1WGBA 1WV4A 2HQ7A 2OL5A 1CI0A 1G79A 3BA3A 2ECRA 3KYFA 3ZOGA 4N7RC 1RZ1A 1USCA 1Y30A 2R6VA 3DMBA 4HMUA 3SWJA 3CB0A 2OU5A 3A6QA 1VL7A 2A2JA 2ECUA 3R5RA 3ZOHA 3R5YA 3FGEA 3BNKA 4YWNA 3U35A 1YOAA 2IG6A 1T9MA 2FG9A 1TY9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A6R A;  3HY8 A;  3CP3 A;  2QCK A;  2GJG A;  1I0R A;  1AXJ A;  3U0I A;  4XHY A;  3VY2 A;  5CHO A;  2HHZ A;  3VY5 A;  1RZ0 A;  2HQ9 A;  3DNH A;  2IAB A;  3K88 A;  2Q9K A;  3KYG A;  3K87 A;  1G77 A;  5JAB A;  2ASF A;  3A20 A;  4R82 A;  5BNC A;  3EC6 A;  4HMT A;  3ZOF A;  1DNL A;  3U5W A;  1W3Q A;  4YBN A;  3R5W A;  1YLN A;  3IN6 A;  2D37 A;  3BPK A;  1W3R A;  1WLK A;  5ESC A;  3AMF A;  3GAS A;  3VYA A;  1G76 A;  1EJE A;  2ED4 A;  3ZOC A;  2I02 A;  2HTD A;  3R5P A;  4Z85 A;  3U34 A;  4L82 A;  2R0X A;  3AWH A;  4F07 A;  3HMZ A;  2D5M A;  1FLM A;  2I51 A;  2IML A;  4HMX A;  4HX6 A;  2RDE A;  4XJ2 A;  1XHN A;  2D38 A;  3K86 A;  2AQ6 A;  2QEA A;  1JNW A;  3DB0 A;  3RH7 A;  1NRG A;  3PFT A;  3F7E A;  2FUR A;  3ZOE A;  3NFW A;  3B5M A;  1XXO A;  2NR4 A;  3FKH A;  1W3O A;  3TGV A;  1W9A A;  2RE7 A;  2VPA A;  1RFE A;  4HMV A;  2E83 A;  1W3P A;  2PTF A;  2FHQ A;  1USF A;  5CHE C;  2D36 A;  1WLI A;  2ARZ A;  2X1K A;  3H96 A;  4HMS A;  4HMW A;  4ZKY A;  2X1J A;  1I0S A;  4IRA A;  3R5Z A;  1G78 A;  3R5L A;  4Y9I A;  2HTI A;  3ZOD A;  3E4V A;  4QVB A;  1WGB A;  1WV4 A;  2HQ7 A;  2OL5 A;  1CI0 A;  1G79 A;  3BA3 A;  2ECR A;  3KYF A;  3ZOG A;  4N7R C;  1RZ1 A;  1USC A;  1Y30 A;  2R6V A;  3DMB A;  4HMU A;  3SWJ A;  3CB0 A;  2OU5 A;  3A6Q A;  1VL7 A;  2A2J A;  2ECU A;  3R5R A;  3ZOH A;  3R5Y A;  3FGE A;  3BNK A;  4YWN A;  3U35 A;  1YOA A;  2IG6 A;  1T9M A;  2FG9 A;  1TY9 A; 
#chains in the Genus database with same CATH topology
 3A6R A;  3HY8 A;  3CP3 A;  2QCK A;  2GJG A;  1I0R A;  1AXJ A;  3HE1 A;  3U0I A;  4XHY A;  3VY2 A;  5CHO A;  2HHZ A;  4HKH A;  1RZ0 A;  2HQ9 A;  3VY5 A;  3DNH A;  2IAB A;  3K88 A;  2K4Q A;  2Q9K A;  3KYG A;  3K87 A;  1G77 A;  5JAB A;  2ASF A;  3A20 A;  4R82 A;  5BNC A;  3EC6 A;  4HMT A;  3ZOF A;  1DNL A;  3U5W A;  1W3Q A;  4YBN A;  3R5W A;  1YLN A;  3IN6 A;  2D37 A;  3BPK A;  1W3R A;  1WLK A;  4MTK A;  5ESC A;  3AMF A;  3GAS A;  3VYA A;  1G76 A;  3EAA A;  1EJE A;  2ED4 A;  3ZOC A;  2I02 A;  2HTD A;  3R5P A;  4Z85 A;  3U34 A;  4L82 A;  2R0X A;  3AWH A;  4F07 A;  3HMZ A;  2D5M A;  1FLM A;  2I51 A;  2IML A;  4HMX A;  4HX6 A;  2RDE A;  4XJ2 A;  1XHN A;  4UHV A;  2D38 A;  3K86 A;  2AQ6 A;  2QEA A;  1JNW A;  3DB0 A;  3RH7 A;  1NRG A;  3PFT A;  3F7E A;  2FUR A;  1Y12 A;  3ZOE A;  4W64 A;  3NFW A;  3B5M A;  1XXO A;  2NR4 A;  3FKH A;  1W3O A;  3TGV A;  1W9A A;  2RE7 A;  2VPA A;  1RFE A;  4HMV A;  2E83 A;  1W3P A;  2PTF A;  2FHQ A;  1USF A;  5CHE C;  2P5Z X;  2D36 A;  1WLI A;  2ARZ A;  2X1K A;  3H96 A;  4TV4 A;  4HMS A;  2GUJ A;  4HMW A;  4ZKY A;  2X1J A;  1I0S A;  4IRA A;  3R5Z A;  1G78 A;  3R5L A;  4Y9I A;  2HTI A;  3ZOD A;  3E4V A;  4QVB A;  1WGB A;  1WV4 A;  2HQ7 A;  2OL5 A;  1CI0 A;  1G79 A;  3BA3 A;  2ECR A;  3KYF A;  3ZOG A;  4N7R C;  1RZ1 A;  1USC A;  1Y30 A;  2R6V A;  3DMB A;  4HMU A;  3SWJ A;  3CB0 A;  2OU5 A;  3A6Q A;  1VL7 A;  2A2J A;  2ECU A;  3R5R A;  3ZOH A;  2L1T A;  3R5Y A;  3FGE A;  3BNK A;  4YWN A;  3V4H A;  3U35 A;  1YOA A;  2IG6 A;  1T9M A;  2FG9 A;  1TY9 A; 
#chains in the Genus database with same CATH homology
 3A6R A;  3HY8 A;  3CP3 A;  2QCK A;  2GJG A;  1I0R A;  1AXJ A;  3U0I A;  4XHY A;  3VY2 A;  5CHO A;  2HHZ A;  3VY5 A;  1RZ0 A;  2HQ9 A;  3DNH A;  2IAB A;  3K88 A;  2Q9K A;  3KYG A;  3K87 A;  1G77 A;  5JAB A;  2ASF A;  3A20 A;  4R82 A;  5BNC A;  3EC6 A;  4HMT A;  3ZOF A;  1DNL A;  3U5W A;  1W3Q A;  4YBN A;  3R5W A;  1YLN A;  3IN6 A;  2D37 A;  3BPK A;  1W3R A;  1WLK A;  5ESC A;  3AMF A;  3GAS A;  3VYA A;  1G76 A;  1EJE A;  2ED4 A;  3ZOC A;  2I02 A;  2HTD A;  3R5P A;  4Z85 A;  3U34 A;  4L82 A;  2R0X A;  3AWH A;  4F07 A;  3HMZ A;  2D5M A;  1FLM A;  2I51 A;  2IML A;  4HMX A;  4HX6 A;  2RDE A;  4XJ2 A;  1XHN A;  2D38 A;  3K86 A;  2AQ6 A;  2QEA A;  1JNW A;  3DB0 A;  3RH7 A;  1NRG A;  3PFT A;  3F7E A;  2FUR A;  3ZOE A;  3NFW A;  3B5M A;  1XXO A;  2NR4 A;  3FKH A;  1W3O A;  3TGV A;  1W9A A;  2RE7 A;  2VPA A;  1RFE A;  4HMV A;  2E83 A;  1W3P A;  2PTF A;  2FHQ A;  1USF A;  5CHE C;  2D36 A;  1WLI A;  2ARZ A;  2X1K A;  3H96 A;  4HMS A;  4HMW A;  4ZKY A;  2X1J A;  1I0S A;  4IRA A;  3R5Z A;  1G78 A;  3R5L A;  4Y9I A;  2HTI A;  3ZOD A;  3E4V A;  4QVB A;  1WGB A;  1WV4 A;  2HQ7 A;  2OL5 A;  1CI0 A;  1G79 A;  3BA3 A;  2ECR A;  3KYF A;  3ZOG A;  4N7R C;  1RZ1 A;  1USC A;  1Y30 A;  2R6V A;  3DMB A;  4HMU A;  3SWJ A;  3CB0 A;  2OU5 A;  3A6Q A;  1VL7 A;  2A2J A;  2ECU A;  3R5R A;  3ZOH A;  3R5Y A;  3FGE A;  3BNK A;  4YWN A;  3U35 A;  1YOA A;  2IG6 A;  1T9M A;  2FG9 A;  1TY9 A; 
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similar chains in the Genus database (?% sequence similarity)
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