1NRGA

Structure and properties of recombinant human pyridoxine-5'-phosphate oxidase
Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
213
structure length
213
Chain Sequence
EETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI6 (203-206)TIV1 (50-53)S4 (106-112)AH1 (58-71)TIV2 (55-58)AH4 (163-171)TI1 (72-75)TVIII1 (75-78)S2 (91-98)TI2 (77-80)TI3 (87-90)TII1 (173-176)TI5 (112-115)AH2 (116-123)S6 (138-148)O1 (124-126)S5 (126-133)3H1 (134-136)AH5 (181-195)TII2 (195-198)S7 (206-211)S1 (80-87)AH3 (151-160)S3 (101-103)TI4 (103-106)Updating...
connected with : NaN
publication title Structure and properties of recombinant human pyridoxine 5'-phosphate oxidase.
pubmed doi rcsb
molecule keywords pyridoxine 5'-phosphate oxidase
molecule tags Oxidoreductase
source organism Homo sapiens
total genus 57
structure length 213
sequence length 213
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2003-01-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1nrgA00
2HQ7A 1YOAA 2GJGA 3R5RA 3KYGA 2IG6A 2VPAA 1WLIA 1W3PA 5JABA 3ZOEA 2X1KA 3HMZA 2IMLA 3B5MA 2ARZA 4QVBA 3ZOFA 3DMBA 2QEAA 4XJ2A 2AQ6A 3BPKA 3HY8A 3PFTA 3BNKA 2QCKA 3CP3A 2NR4A 2X1JA 3GASA 3BA3A 2I51A 4ZKYA 1WV4A 4HMUA 2RDEA 3SWJA 1G76A 3TGVA 3A6QA 1I0SA 3ZOHA 3A6RA 5CHOA 3VY5A 1W3OA 3U35A 1I0RA 3R5ZA 2FURA 3U0IA 3VYAA 3F7EA 2E83A 3ZOCA 3AWHA 4HMSA 2FG9A 1VL7A 3U34A 4HMXA 3FGEA 4HMWA 2IABA 2D37A 5CHEC 5BNCA 2RE7A 3KYFA 1TY9A 3CB0A 2OL5A 3VY2A 2A2JA 2OU5A 1T9MA 2ECUA 3EC6A 1NRGA 3K87A 1WLKA 1XXOA 1W3QA 2D36A 3IN6A 3NFWA 4HX6A 4R82A 2ASFA 3RH7A 3AMFA 3K88A 1G77A 4IRAA 1USCA 1XHNA 1RZ0A 2D5MA 3H96A 4L82A 3FKHA 3ZODA 1W9AA 4HMTA 1G79A 3R5WA 2HTDA 3ZOGA 1FLMA 4Y9IA 4YWNA 3R5LA 2I02A 3K86A 1USFA 1CI0A 3E4VA 3U5WA 4XHYA 1DNLA 4HMVA 4N7RC 3DNHA 1RZ1A 2R6VA 2D38A 2FHQA 1EJEA 2HQ9A 5ESCA 2HTIA 1WGBA 2R0XA 4Z85A 2HHZA 2ED4A 2Q9KA 4YBNA 1AXJA 3A20A 3R5PA 4F07A 3DB0A 1G78A 2ECRA 1JNWA 2PTFA 1W3RA 1RFEA 3R5YA 1Y30A 1YLNA
chains in the Genus database with same CATH superfamily
2HQ7A 1Y12A 1YOAA 2GJGA 2K4QA 3R5RA 3KYGA 2IG6A 2VPAA 1WLIA 1W3PA 5JABA 3ZOEA 2X1KA 3HMZA 2IMLA 3B5MA 2ARZA 4QVBA 3ZOFA 3DMBA 2QEAA 4XJ2A 2AQ6A 3HE1A 3BPKA 3HY8A 3PFTA 3BNKA 2QCKA 3CP3A 2NR4A 3EAAA 2X1JA 3GASA 3BA3A 2I51A 4ZKYA 1WV4A 4HMUA 2RDEA 3SWJA 2GUJA 1G76A 3TGVA 3A6QA 1I0SA 3ZOHA 3A6RA 5CHOA 3VY5A 1W3OA 3U35A 1I0RA 3R5ZA 2FURA 3U0IA 3VYAA 3F7EA 2E83A 3ZOCA 3AWHA 4HMSA 2FG9A 1VL7A 3U34A 3V4HA 4HMXA 3FGEA 4MTKA 4HMWA 2IABA 2D37A 5CHEC 5BNCA 2RE7A 3KYFA 1TY9A 3CB0A 2OL5A 3VY2A 2A2JA 2OU5A 1T9MA 2ECUA 3EC6A 1NRGA 3K87A 1WLKA 1XXOA 1W3QA 2D36A 3IN6A 3NFWA 4HKHA 4HX6A 4R82A 2ASFA 3RH7A 3AMFA 3K88A 1G77A 4IRAA 1USCA 1XHNA 1RZ0A 2D5MA 3H96A 4L82A 3FKHA 2P5ZX 3ZODA 1W9AA 4HMTA 1G79A 3R5WA 2HTDA 3ZOGA 1FLMA 4Y9IA 4YWNA 3R5LA 2I02A 3K86A 1USFA 1CI0A 3E4VA 4TV4A 3U5WA 4XHYA 1DNLA 4HMVA 4N7RC 3DNHA 1RZ1A 2R6VA 2D38A 4W64A 2L1TA 2FHQA 1EJEA 2HQ9A 5ESCA 2HTIA 1WGBA 2R0XA 4Z85A 2HHZA 2ED4A 2Q9KA 4YBNA 1AXJA 3A20A 3R5PA 4F07A 3DB0A 1G78A 2ECRA 4UHVA 1JNWA 2PTFA 1W3RA 1RFEA 3R5YA 1Y30A 1YLNA
chains in the Genus database with same CATH topology
2HQ7A 1YOAA 2GJGA 3R5RA 3KYGA 2IG6A 2VPAA 1WLIA 1W3PA 5JABA 3ZOEA 2X1KA 3HMZA 2IMLA 3B5MA 2ARZA 4QVBA 3ZOFA 3DMBA 2QEAA 4XJ2A 2AQ6A 3BPKA 3HY8A 3PFTA 3BNKA 2QCKA 3CP3A 2NR4A 2X1JA 3GASA 3BA3A 2I51A 4ZKYA 1WV4A 4HMUA 2RDEA 3SWJA 1G76A 3TGVA 3A6QA 1I0SA 3ZOHA 3A6RA 5CHOA 3VY5A 1W3OA 3U35A 1I0RA 3R5ZA 2FURA 3U0IA 3VYAA 3F7EA 2E83A 3ZOCA 3AWHA 4HMSA 2FG9A 1VL7A 3U34A 4HMXA 3FGEA 4HMWA 2IABA 2D37A 5CHEC 5BNCA 2RE7A 3KYFA 1TY9A 3CB0A 2OL5A 3VY2A 2A2JA 2OU5A 1T9MA 2ECUA 3EC6A 1NRGA 3K87A 1WLKA 1XXOA 1W3QA 2D36A 3IN6A 3NFWA 4HX6A 4R82A 2ASFA 3RH7A 3AMFA 3K88A 1G77A 4IRAA 1USCA 1XHNA 1RZ0A 2D5MA 3H96A 4L82A 3FKHA 3ZODA 1W9AA 4HMTA 1G79A 3R5WA 2HTDA 3ZOGA 1FLMA 4Y9IA 4YWNA 3R5LA 2I02A 3K86A 1USFA 1CI0A 3E4VA 3U5WA 4XHYA 1DNLA 4HMVA 4N7RC 3DNHA 1RZ1A 2R6VA 2D38A 2FHQA 1EJEA 2HQ9A 5ESCA 2HTIA 1WGBA 2R0XA 4Z85A 2HHZA 2ED4A 2Q9KA 4YBNA 1AXJA 3A20A 3R5PA 4F07A 3DB0A 1G78A 2ECRA 1JNWA 2PTFA 1W3RA 1RFEA 3R5YA 1Y30A 1YLNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HQ7 A;  1YOA A;  2GJG A;  3R5R A;  3KYG A;  2IG6 A;  2VPA A;  1WLI A;  1W3P A;  5JAB A;  3ZOE A;  2X1K A;  3HMZ A;  2IML A;  3B5M A;  2ARZ A;  4QVB A;  3ZOF A;  3DMB A;  2QEA A;  4XJ2 A;  2AQ6 A;  3BPK A;  3HY8 A;  3PFT A;  3BNK A;  2QCK A;  3CP3 A;  2NR4 A;  2X1J A;  3GAS A;  3BA3 A;  2I51 A;  4ZKY A;  1WV4 A;  4HMU A;  2RDE A;  3SWJ A;  1G76 A;  3TGV A;  3A6Q A;  1I0S A;  3ZOH A;  3A6R A;  5CHO A;  3VY5 A;  1W3O A;  3U35 A;  1I0R A;  3R5Z A;  2FUR A;  3U0I A;  3VYA A;  3F7E A;  2E83 A;  3ZOC A;  3AWH A;  4HMS A;  2FG9 A;  1VL7 A;  3U34 A;  4HMX A;  3FGE A;  4HMW A;  2IAB A;  2D37 A;  5CHE C;  5BNC A;  2RE7 A;  3KYF A;  1TY9 A;  3CB0 A;  2OL5 A;  3VY2 A;  2A2J A;  2OU5 A;  1T9M A;  2ECU A;  3EC6 A;  1NRG A;  3K87 A;  1WLK A;  1XXO A;  1W3Q A;  2D36 A;  3IN6 A;  3NFW A;  4HX6 A;  4R82 A;  2ASF A;  3RH7 A;  3AMF A;  3K88 A;  1G77 A;  4IRA A;  1USC A;  1XHN A;  1RZ0 A;  2D5M A;  3H96 A;  4L82 A;  3FKH A;  3ZOD A;  1W9A A;  4HMT A;  1G79 A;  3R5W A;  2HTD A;  3ZOG A;  1FLM A;  4Y9I A;  4YWN A;  3R5L A;  2I02 A;  3K86 A;  1USF A;  1CI0 A;  3E4V A;  3U5W A;  4XHY A;  1DNL A;  4HMV A;  4N7R C;  3DNH A;  1RZ1 A;  2R6V A;  2D38 A;  2FHQ A;  1EJE A;  2HQ9 A;  5ESC A;  2HTI A;  1WGB A;  2R0X A;  4Z85 A;  2HHZ A;  2ED4 A;  2Q9K A;  4YBN A;  1AXJ A;  3A20 A;  3R5P A;  4F07 A;  3DB0 A;  1G78 A;  2ECR A;  1JNW A;  2PTF A;  1W3R A;  1RFE A;  3R5Y A;  1Y30 A;  1YLN A; 
#chains in the Genus database with same CATH topology
 2HQ7 A;  1Y12 A;  1YOA A;  2GJG A;  2K4Q A;  3R5R A;  3KYG A;  2IG6 A;  2VPA A;  1WLI A;  1W3P A;  5JAB A;  3ZOE A;  2X1K A;  3HMZ A;  2IML A;  3B5M A;  2ARZ A;  4QVB A;  3ZOF A;  3DMB A;  2QEA A;  4XJ2 A;  2AQ6 A;  3HE1 A;  3BPK A;  3HY8 A;  3PFT A;  3BNK A;  2QCK A;  3CP3 A;  2NR4 A;  3EAA A;  2X1J A;  3GAS A;  3BA3 A;  2I51 A;  4ZKY A;  1WV4 A;  4HMU A;  2RDE A;  3SWJ A;  2GUJ A;  1G76 A;  3TGV A;  3A6Q A;  1I0S A;  3ZOH A;  3A6R A;  5CHO A;  3VY5 A;  1W3O A;  3U35 A;  1I0R A;  3R5Z A;  2FUR A;  3U0I A;  3VYA A;  3F7E A;  2E83 A;  3ZOC A;  3AWH A;  4HMS A;  2FG9 A;  1VL7 A;  3U34 A;  3V4H A;  4HMX A;  3FGE A;  4MTK A;  4HMW A;  2IAB A;  2D37 A;  5CHE C;  5BNC A;  2RE7 A;  3KYF A;  1TY9 A;  3CB0 A;  2OL5 A;  3VY2 A;  2A2J A;  2OU5 A;  1T9M A;  2ECU A;  3EC6 A;  1NRG A;  3K87 A;  1WLK A;  1XXO A;  1W3Q A;  2D36 A;  3IN6 A;  3NFW A;  4HKH A;  4HX6 A;  4R82 A;  2ASF A;  3RH7 A;  3AMF A;  3K88 A;  1G77 A;  4IRA A;  1USC A;  1XHN A;  1RZ0 A;  2D5M A;  3H96 A;  4L82 A;  3FKH A;  2P5Z X;  3ZOD A;  1W9A A;  4HMT A;  1G79 A;  3R5W A;  2HTD A;  3ZOG A;  1FLM A;  4Y9I A;  4YWN A;  3R5L A;  2I02 A;  3K86 A;  1USF A;  1CI0 A;  3E4V A;  4TV4 A;  3U5W A;  4XHY A;  1DNL A;  4HMV A;  4N7R C;  3DNH A;  1RZ1 A;  2R6V A;  2D38 A;  4W64 A;  2L1T A;  2FHQ A;  1EJE A;  2HQ9 A;  5ESC A;  2HTI A;  1WGB A;  2R0X A;  4Z85 A;  2HHZ A;  2ED4 A;  2Q9K A;  4YBN A;  1AXJ A;  3A20 A;  3R5P A;  4F07 A;  3DB0 A;  1G78 A;  2ECR A;  4UHV A;  1JNW A;  2PTF A;  1W3R A;  1RFE A;  3R5Y A;  1Y30 A;  1YLN A; 
#chains in the Genus database with same CATH homology
 2HQ7 A;  1YOA A;  2GJG A;  3R5R A;  3KYG A;  2IG6 A;  2VPA A;  1WLI A;  1W3P A;  5JAB A;  3ZOE A;  2X1K A;  3HMZ A;  2IML A;  3B5M A;  2ARZ A;  4QVB A;  3ZOF A;  3DMB A;  2QEA A;  4XJ2 A;  2AQ6 A;  3BPK A;  3HY8 A;  3PFT A;  3BNK A;  2QCK A;  3CP3 A;  2NR4 A;  2X1J A;  3GAS A;  3BA3 A;  2I51 A;  4ZKY A;  1WV4 A;  4HMU A;  2RDE A;  3SWJ A;  1G76 A;  3TGV A;  3A6Q A;  1I0S A;  3ZOH A;  3A6R A;  5CHO A;  3VY5 A;  1W3O A;  3U35 A;  1I0R A;  3R5Z A;  2FUR A;  3U0I A;  3VYA A;  3F7E A;  2E83 A;  3ZOC A;  3AWH A;  4HMS A;  2FG9 A;  1VL7 A;  3U34 A;  4HMX A;  3FGE A;  4HMW A;  2IAB A;  2D37 A;  5CHE C;  5BNC A;  2RE7 A;  3KYF A;  1TY9 A;  3CB0 A;  2OL5 A;  3VY2 A;  2A2J A;  2OU5 A;  1T9M A;  2ECU A;  3EC6 A;  1NRG A;  3K87 A;  1WLK A;  1XXO A;  1W3Q A;  2D36 A;  3IN6 A;  3NFW A;  4HX6 A;  4R82 A;  2ASF A;  3RH7 A;  3AMF A;  3K88 A;  1G77 A;  4IRA A;  1USC A;  1XHN A;  1RZ0 A;  2D5M A;  3H96 A;  4L82 A;  3FKH A;  3ZOD A;  1W9A A;  4HMT A;  1G79 A;  3R5W A;  2HTD A;  3ZOG A;  1FLM A;  4Y9I A;  4YWN A;  3R5L A;  2I02 A;  3K86 A;  1USF A;  1CI0 A;  3E4V A;  3U5W A;  4XHY A;  1DNL A;  4HMV A;  4N7R C;  3DNH A;  1RZ1 A;  2R6V A;  2D38 A;  2FHQ A;  1EJE A;  2HQ9 A;  5ESC A;  2HTI A;  1WGB A;  2R0X A;  4Z85 A;  2HHZ A;  2ED4 A;  2Q9K A;  4YBN A;  1AXJ A;  3A20 A;  3R5P A;  4F07 A;  3DB0 A;  1G78 A;  2ECR A;  1JNW A;  2PTF A;  1W3R A;  1RFE A;  3R5Y A;  1Y30 A;  1YLN A; 
1DNLA 1G76A 1G77A 1G78A 3HY8A 6H00A 8QYTA 8QYWA
similar chains in the Genus database (40% sequence similarity)
8ROSAAA
similar chains in the pdb database (40% sequence similarity)

 
#similar chains in the Genus database (40% sequence similarity)
1DNL A; 1G76 A; 1G77 A; 1G78 A; 3HY8 A; 6H00 A; 8QYT A; 8QYW A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)
8ROS AAA; 

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