1NRGA

Structure and properties of recombinant human pyridoxine-5'-phosphate oxidase
Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
213
structure length
213
Chain Sequence
EETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI6 (203-206)TIV1 (50-53)S4 (106-112)AH1 (58-71)TIV2 (55-58)AH4 (163-171)TI1 (72-75)TVIII1 (75-78)S2 (91-98)TI2 (77-80)TI3 (87-90)TII1 (173-176)TI5 (112-115)AH2 (116-123)S6 (138-148)O1 (124-126)S5 (126-133)3H1 (134-136)AH5 (181-195)TII2 (195-198)S7 (206-211)S1 (80-87)AH3 (151-160)S3 (101-103)TI4 (103-106)Updating...
connected with : NaN
publication title Structure and properties of recombinant human pyridoxine 5'-phosphate oxidase.
pubmed doi rcsb
molecule keywords pyridoxine 5'-phosphate oxidase
molecule tags Oxidoreductase
source organism Homo sapiens
total genus 57
structure length 213
sequence length 213
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2003-01-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1nrgA00
3IN6A 4HMTA 3ZOCA 4F07A 3ZOHA 2ECRA 3A20A 3B5MA 2AQ6A 3A6QA 3CP3A 3NFWA 3ZOEA 4R82A 2FHQA 4Z85A 5ESCA 1W3OA 2X1KA 3EC6A 3U34A 2D38A 3F7EA 4Y9IA 2IABA 2HHZA 1WLKA 1G79A 1W3QA 2I51A 1AXJA 2ED4A 3R5LA 1WGBA 4YWNA 2HTDA 1TY9A 2Q9KA 2IMLA 2RE7A 1WV4A 3DMBA 3A6RA 1USFA 3R5ZA 2HTIA 4ZKYA 3E4VA 3AMFA 2IG6A 1CI0A 3ZOGA 1XHNA 3FGEA 3DNHA 4HX6A 2FURA 3R5RA 3R5YA 4IRAA 2RDEA 2PTFA 1G78A 2ECUA 3VYAA 1RZ0A 4HMUA 3VY2A 3ZOFA 4HMSA 3R5PA 2I02A 3U0IA 3BA3A 3TGVA 2HQ9A 1W9AA 2R0XA 1VL7A 2X1JA 4XHYA 4YBNA 2FG9A 3VY5A 1T9MA 2A2JA 2ARZA 1WLIA 1YLNA 3FKHA 3K87A 3HMZA 3K88A 2QEAA 1FLMA 1W3PA 2D36A 4N7RC 2HQ7A 3PFTA 3RH7A 1I0RA 3DB0A 5BNCA 1EJEA 3K86A 2QCKA 2R6VA 1Y30A 4L82A 2GJGA 3SWJA 3U35A 2OU5A 3ZODA 3H96A 5CHOA 4HMVA 2D5MA 3AWHA 3BPKA 3R5WA 1NRGA 1W3RA 3HY8A 1I0SA 3GASA 3KYGA 4XJ2A 1DNLA 2NR4A 1USCA 2E83A 1XXOA 2VPAA 3U5WA 4QVBA 3BNKA 5CHEC 2D37A 4HMWA 2OL5A 1RFEA 2ASFA 4HMXA 3CB0A 5JABA 1JNWA 1RZ1A 1G77A 3KYFA 1YOAA 1G76A
chains in the Genus database with same CATH superfamily
3IN6A 4HMTA 3ZOCA 4F07A 3ZOHA 2ECRA 3A20A 3B5MA 4W64A 2AQ6A 3A6QA 3CP3A 3NFWA 3ZOEA 4R82A 2FHQA 4Z85A 5ESCA 1W3OA 2X1KA 3EC6A 3U34A 2D38A 3F7EA 4Y9IA 2IABA 2HHZA 4UHVA 1WLKA 1G79A 1W3QA 2I51A 1AXJA 2ED4A 3R5LA 1WGBA 4YWNA 2HTDA 1TY9A 2Q9KA 2IMLA 2RE7A 1WV4A 3DMBA 3A6RA 1USFA 3R5ZA 2HTIA 4ZKYA 3E4VA 3AMFA 2IG6A 1CI0A 3ZOGA 1XHNA 3FGEA 2P5ZX 3DNHA 4HX6A 2FURA 3R5RA 3R5YA 4IRAA 2RDEA 2PTFA 1G78A 2ECUA 3VYAA 1RZ0A 4HMUA 2GUJA 3VY2A 3ZOFA 4HMSA 3R5PA 2I02A 3U0IA 3HE1A 3BA3A 4MTKA 3TGVA 2HQ9A 1W9AA 2R0XA 1VL7A 2X1JA 4XHYA 1Y12A 4TV4A 4YBNA 2FG9A 3VY5A 1T9MA 2A2JA 2ARZA 1WLIA 1YLNA 3FKHA 2L1TA 3K87A 3HMZA 3K88A 2QEAA 1FLMA 1W3PA 2D36A 4N7RC 2HQ7A 3PFTA 3RH7A 1I0RA 3DB0A 5BNCA 1EJEA 3K86A 2QCKA 2R6VA 1Y30A 4L82A 2GJGA 3SWJA 3U35A 2OU5A 3EAAA 3H96A 3ZODA 5CHOA 4HMVA 2D5MA 3AWHA 3BPKA 3R5WA 4HKHA 1NRGA 1W3RA 3HY8A 1I0SA 3GASA 3KYGA 4XJ2A 1DNLA 2NR4A 1USCA 2E83A 1XXOA 3V4HA 2VPAA 3U5WA 4QVBA 3BNKA 5CHEC 2D37A 4HMWA 2OL5A 1RFEA 2ASFA 4HMXA 3CB0A 5JABA 1JNWA 1RZ1A 2K4QA 1G77A 3KYFA 1YOAA 1G76A
chains in the Genus database with same CATH topology
3IN6A 4HMTA 3ZOCA 4F07A 3ZOHA 2ECRA 3A20A 3B5MA 2AQ6A 3A6QA 3CP3A 3NFWA 3ZOEA 4R82A 2FHQA 4Z85A 5ESCA 1W3OA 2X1KA 3EC6A 3U34A 2D38A 3F7EA 4Y9IA 2IABA 2HHZA 1WLKA 1G79A 1W3QA 2I51A 1AXJA 2ED4A 3R5LA 1WGBA 4YWNA 2HTDA 1TY9A 2Q9KA 2IMLA 2RE7A 1WV4A 3DMBA 3A6RA 1USFA 3R5ZA 2HTIA 4ZKYA 3E4VA 3AMFA 2IG6A 1CI0A 3ZOGA 1XHNA 3FGEA 3DNHA 4HX6A 2FURA 3R5RA 3R5YA 4IRAA 2RDEA 2PTFA 1G78A 2ECUA 3VYAA 1RZ0A 4HMUA 3VY2A 3ZOFA 4HMSA 3R5PA 2I02A 3U0IA 3BA3A 3TGVA 2HQ9A 1W9AA 2R0XA 1VL7A 2X1JA 4XHYA 4YBNA 2FG9A 3VY5A 1T9MA 2A2JA 2ARZA 1WLIA 1YLNA 3FKHA 3K87A 3HMZA 3K88A 2QEAA 1FLMA 1W3PA 2D36A 4N7RC 2HQ7A 3PFTA 3RH7A 1I0RA 3DB0A 5BNCA 1EJEA 3K86A 2QCKA 2R6VA 1Y30A 4L82A 2GJGA 3SWJA 3U35A 2OU5A 3ZODA 3H96A 5CHOA 4HMVA 2D5MA 3AWHA 3BPKA 3R5WA 1NRGA 1W3RA 3HY8A 1I0SA 3GASA 3KYGA 4XJ2A 1DNLA 2NR4A 1USCA 2E83A 1XXOA 2VPAA 3U5WA 4QVBA 3BNKA 5CHEC 2D37A 4HMWA 2OL5A 1RFEA 2ASFA 4HMXA 3CB0A 5JABA 1JNWA 1RZ1A 1G77A 3KYFA 1YOAA 1G76A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IN6 A;  4HMT A;  3ZOC A;  4F07 A;  3ZOH A;  2ECR A;  3A20 A;  3B5M A;  2AQ6 A;  3A6Q A;  3CP3 A;  3NFW A;  3ZOE A;  4R82 A;  2FHQ A;  4Z85 A;  5ESC A;  1W3O A;  2X1K A;  3EC6 A;  3U34 A;  2D38 A;  3F7E A;  4Y9I A;  2IAB A;  2HHZ A;  1WLK A;  1G79 A;  1W3Q A;  2I51 A;  1AXJ A;  2ED4 A;  3R5L A;  1WGB A;  4YWN A;  2HTD A;  1TY9 A;  2Q9K A;  2IML A;  2RE7 A;  1WV4 A;  3DMB A;  3A6R A;  1USF A;  3R5Z A;  2HTI A;  4ZKY A;  3E4V A;  3AMF A;  2IG6 A;  1CI0 A;  3ZOG A;  1XHN A;  3FGE A;  3DNH A;  4HX6 A;  2FUR A;  3R5R A;  3R5Y A;  4IRA A;  2RDE A;  2PTF A;  1G78 A;  2ECU A;  3VYA A;  1RZ0 A;  4HMU A;  3VY2 A;  3ZOF A;  4HMS A;  3R5P A;  2I02 A;  3U0I A;  3BA3 A;  3TGV A;  2HQ9 A;  1W9A A;  2R0X A;  1VL7 A;  2X1J A;  4XHY A;  4YBN A;  2FG9 A;  3VY5 A;  1T9M A;  2A2J A;  2ARZ A;  1WLI A;  1YLN A;  3FKH A;  3K87 A;  3HMZ A;  3K88 A;  2QEA A;  1FLM A;  1W3P A;  2D36 A;  4N7R C;  2HQ7 A;  3PFT A;  3RH7 A;  1I0R A;  3DB0 A;  5BNC A;  1EJE A;  3K86 A;  2QCK A;  2R6V A;  1Y30 A;  4L82 A;  2GJG A;  3SWJ A;  3U35 A;  2OU5 A;  3ZOD A;  3H96 A;  5CHO A;  4HMV A;  2D5M A;  3AWH A;  3BPK A;  3R5W A;  1NRG A;  1W3R A;  3HY8 A;  1I0S A;  3GAS A;  3KYG A;  4XJ2 A;  1DNL A;  2NR4 A;  1USC A;  2E83 A;  1XXO A;  2VPA A;  3U5W A;  4QVB A;  3BNK A;  5CHE C;  2D37 A;  4HMW A;  2OL5 A;  1RFE A;  2ASF A;  4HMX A;  3CB0 A;  5JAB A;  1JNW A;  1RZ1 A;  1G77 A;  3KYF A;  1YOA A;  1G76 A; 
#chains in the Genus database with same CATH topology
 3IN6 A;  4HMT A;  3ZOC A;  4F07 A;  3ZOH A;  2ECR A;  3A20 A;  3B5M A;  4W64 A;  2AQ6 A;  3A6Q A;  3CP3 A;  3NFW A;  3ZOE A;  4R82 A;  2FHQ A;  4Z85 A;  5ESC A;  1W3O A;  2X1K A;  3EC6 A;  3U34 A;  2D38 A;  3F7E A;  4Y9I A;  2IAB A;  2HHZ A;  4UHV A;  1WLK A;  1G79 A;  1W3Q A;  2I51 A;  1AXJ A;  2ED4 A;  3R5L A;  1WGB A;  4YWN A;  2HTD A;  1TY9 A;  2Q9K A;  2IML A;  2RE7 A;  1WV4 A;  3DMB A;  3A6R A;  1USF A;  3R5Z A;  2HTI A;  4ZKY A;  3E4V A;  3AMF A;  2IG6 A;  1CI0 A;  3ZOG A;  1XHN A;  3FGE A;  2P5Z X;  3DNH A;  4HX6 A;  2FUR A;  3R5R A;  3R5Y A;  4IRA A;  2RDE A;  2PTF A;  1G78 A;  2ECU A;  3VYA A;  1RZ0 A;  4HMU A;  2GUJ A;  3VY2 A;  3ZOF A;  4HMS A;  3R5P A;  2I02 A;  3U0I A;  3HE1 A;  3BA3 A;  4MTK A;  3TGV A;  2HQ9 A;  1W9A A;  2R0X A;  1VL7 A;  2X1J A;  4XHY A;  1Y12 A;  4TV4 A;  4YBN A;  2FG9 A;  3VY5 A;  1T9M A;  2A2J A;  2ARZ A;  1WLI A;  1YLN A;  3FKH A;  2L1T A;  3K87 A;  3HMZ A;  3K88 A;  2QEA A;  1FLM A;  1W3P A;  2D36 A;  4N7R C;  2HQ7 A;  3PFT A;  3RH7 A;  1I0R A;  3DB0 A;  5BNC A;  1EJE A;  3K86 A;  2QCK A;  2R6V A;  1Y30 A;  4L82 A;  2GJG A;  3SWJ A;  3U35 A;  2OU5 A;  3EAA A;  3H96 A;  3ZOD A;  5CHO A;  4HMV A;  2D5M A;  3AWH A;  3BPK A;  3R5W A;  4HKH A;  1NRG A;  1W3R A;  3HY8 A;  1I0S A;  3GAS A;  3KYG A;  4XJ2 A;  1DNL A;  2NR4 A;  1USC A;  2E83 A;  1XXO A;  3V4H A;  2VPA A;  3U5W A;  4QVB A;  3BNK A;  5CHE C;  2D37 A;  4HMW A;  2OL5 A;  1RFE A;  2ASF A;  4HMX A;  3CB0 A;  5JAB A;  1JNW A;  1RZ1 A;  2K4Q A;  1G77 A;  3KYF A;  1YOA A;  1G76 A; 
#chains in the Genus database with same CATH homology
 3IN6 A;  4HMT A;  3ZOC A;  4F07 A;  3ZOH A;  2ECR A;  3A20 A;  3B5M A;  2AQ6 A;  3A6Q A;  3CP3 A;  3NFW A;  3ZOE A;  4R82 A;  2FHQ A;  4Z85 A;  5ESC A;  1W3O A;  2X1K A;  3EC6 A;  3U34 A;  2D38 A;  3F7E A;  4Y9I A;  2IAB A;  2HHZ A;  1WLK A;  1G79 A;  1W3Q A;  2I51 A;  1AXJ A;  2ED4 A;  3R5L A;  1WGB A;  4YWN A;  2HTD A;  1TY9 A;  2Q9K A;  2IML A;  2RE7 A;  1WV4 A;  3DMB A;  3A6R A;  1USF A;  3R5Z A;  2HTI A;  4ZKY A;  3E4V A;  3AMF A;  2IG6 A;  1CI0 A;  3ZOG A;  1XHN A;  3FGE A;  3DNH A;  4HX6 A;  2FUR A;  3R5R A;  3R5Y A;  4IRA A;  2RDE A;  2PTF A;  1G78 A;  2ECU A;  3VYA A;  1RZ0 A;  4HMU A;  3VY2 A;  3ZOF A;  4HMS A;  3R5P A;  2I02 A;  3U0I A;  3BA3 A;  3TGV A;  2HQ9 A;  1W9A A;  2R0X A;  1VL7 A;  2X1J A;  4XHY A;  4YBN A;  2FG9 A;  3VY5 A;  1T9M A;  2A2J A;  2ARZ A;  1WLI A;  1YLN A;  3FKH A;  3K87 A;  3HMZ A;  3K88 A;  2QEA A;  1FLM A;  1W3P A;  2D36 A;  4N7R C;  2HQ7 A;  3PFT A;  3RH7 A;  1I0R A;  3DB0 A;  5BNC A;  1EJE A;  3K86 A;  2QCK A;  2R6V A;  1Y30 A;  4L82 A;  2GJG A;  3SWJ A;  3U35 A;  2OU5 A;  3ZOD A;  3H96 A;  5CHO A;  4HMV A;  2D5M A;  3AWH A;  3BPK A;  3R5W A;  1NRG A;  1W3R A;  3HY8 A;  1I0S A;  3GAS A;  3KYG A;  4XJ2 A;  1DNL A;  2NR4 A;  1USC A;  2E83 A;  1XXO A;  2VPA A;  3U5W A;  4QVB A;  3BNK A;  5CHE C;  2D37 A;  4HMW A;  2OL5 A;  1RFE A;  2ASF A;  4HMX A;  3CB0 A;  5JAB A;  1JNW A;  1RZ1 A;  1G77 A;  3KYF A;  1YOA A;  1G76 A; 
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similar chains in the Genus database (?% sequence similarity)
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