1W3PA

Nima from d. radiodurans with a his71-pyruvate residue
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
215
structure length
204
Chain Sequence
SYYHHHHHHLSDFYDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERVFPGLKVGETTRPISEDDLKRTSVYSLSIDRWSGKENWAEQAIQEEDWPALGPEWLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI4 (191-194)TI1 (11-14)AH2 (24-33)TI3 (183-186)TVIII3 (177-180)S1 (36-44)TVIII1 (101-104)3H2 (63-65)TI2 (45-48)S5 (85-99)S3 (67-71)S4 (78-79)TII2 (144-147)S7 (162-175)TIV2 (83-86)S6 (108-122)AH3 (125-139)TIV3 (145-148)TIV4 (146-149)AH4 (154-159)TIV5 (190-193)TIV1 (17-20)S2 (50-62)3H3 (104-106)3H1 (3-5)TII1 (140-143)Updating...
connected with : NaN
publication title Structural Basis of 5-Nitroimidazole Antibiotic Resistance: The Crystal Structure of Nima from Deinococcus Radiodurans
pubmed doi rcsb
molecule keywords NIMA-RELATED PROTEIN
molecule tags Antibiotic resistance
source organism Deinococcus radiodurans
total genus 48
structure length 204
sequence length 215
ec nomenclature
pdb deposition date 2004-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1w3pA00
1W3PA 2HQ9A 3R5PA 4ZKYA 2A2JA 3VY5A 3SWJA 3U35A 2IMLA 2VPAA 2D36A 3R5LA 3K88A 3B5MA 3K86A 3PFTA 1W3QA 4Y9IA 4N7RC 2ECRA 1G77A 1YOAA 3NFWA 1WV4A 4XJ2A 2X1JA 2HQ7A 3A6QA 3DB0A 3CB0A 1WLIA 3FGEA 3BNKA 1USFA 1XXOA 3U34A 3KYGA 5CHEC 1Y30A 3FKHA 3VY2A 1T9MA 2QEAA 3R5ZA 3ZOGA 4QVBA 3DMBA 4R82A 2GJGA 2R0XA 3F7EA 4F07A 2QCKA 4XHYA 4YBNA 1W3OA 1XHNA 4HMXA 1EJEA 3AWHA 1G76A 2PTFA 3R5YA 2Q9KA 4IRAA 2HHZA 1WGBA 3A20A 3EC6A 3IN6A 2D37A 2ASFA 1DNLA 2IABA 3TGVA 2OU5A 2NR4A 3RH7A 4HMUA 5JABA 2R6VA 1WLKA 3ZODA 2FURA 1NRGA 3R5RA 1RFEA 1RZ1A 1CI0A 1FLMA 2D38A 4Z85A 5CHOA 1RZ0A 4HMSA 3CP3A 3U5WA 3HMZA 4HMWA 3ZOHA 3AMFA 5ESCA 1TY9A 2FG9A 2ED4A 3HY8A 4L82A 2ECUA 1VL7A 1I0SA 2HTDA 1G79A 1W9AA 3BPKA 3ZOCA 3K87A 1JNWA 4HMTA 3DNHA 3R5WA 2D5MA 5BNCA 3U0IA 1YLNA 1USCA 2E83A 3ZOEA 3H96A 4HMVA 1AXJA 2RDEA 4HX6A 2ARZA 3A6RA 3VYAA 4YWNA 1G78A 2IG6A 2OL5A 1I0RA 3GASA 2X1KA 2I51A 3E4VA 3ZOFA 3BA3A 2RE7A 2FHQA 3KYFA 2I02A 2HTIA 1W3RA 2AQ6A
chains in the Genus database with same CATH superfamily
1W3PA 2HQ9A 3R5PA 4ZKYA 2A2JA 3VY5A 3SWJA 3U35A 4HKHA 2IMLA 2VPAA 2D36A 3HE1A 3R5LA 3K88A 3B5MA 3K86A 3PFTA 2K4QA 1W3QA 4Y9IA 4N7RC 2ECRA 1G77A 1YOAA 3EAAA 3NFWA 1WV4A 4XJ2A 2X1JA 2HQ7A 3A6QA 3DB0A 3CB0A 1WLIA 3FGEA 3BNKA 1USFA 1XXOA 3U34A 3KYGA 5CHEC 1Y30A 3FKHA 3VY2A 1T9MA 2QEAA 3R5ZA 3ZOGA 4QVBA 3DMBA 4R82A 2GJGA 2R0XA 3F7EA 1Y12A 4F07A 4W64A 2QCKA 4XHYA 4YBNA 1W3OA 1XHNA 4HMXA 1EJEA 4TV4A 3AWHA 1G76A 2PTFA 3R5YA 2Q9KA 4IRAA 2HHZA 1WGBA 3A20A 3EC6A 3IN6A 2D37A 2ASFA 1DNLA 2IABA 3TGVA 2OU5A 2NR4A 3RH7A 4HMUA 5JABA 2R6VA 2GUJA 2P5ZX 1WLKA 3ZODA 2FURA 1NRGA 3R5RA 1RFEA 1RZ1A 1CI0A 1FLMA 2D38A 4Z85A 5CHOA 1RZ0A 4HMSA 3CP3A 3U5WA 3HMZA 4HMWA 3V4HA 3ZOHA 3AMFA 5ESCA 1TY9A 2FG9A 2ED4A 3HY8A 4L82A 2ECUA 1VL7A 1I0SA 2HTDA 1G79A 1W9AA 3BPKA 4UHVA 3K87A 3ZOCA 1JNWA 4HMTA 3DNHA 3R5WA 2D5MA 4MTKA 5BNCA 3U0IA 1YLNA 1USCA 2E83A 3ZOEA 3H96A 4HMVA 1AXJA 2RDEA 4HX6A 2ARZA 3A6RA 3VYAA 4YWNA 1G78A 2IG6A 2OL5A 1I0RA 3GASA 2X1KA 2I51A 3E4VA 3ZOFA 3BA3A 2RE7A 2FHQA 3KYFA 2I02A 2HTIA 2L1TA 1W3RA 2AQ6A
chains in the Genus database with same CATH topology
1W3PA 2HQ9A 3R5PA 4ZKYA 2A2JA 3VY5A 3SWJA 3U35A 2IMLA 2VPAA 2D36A 3R5LA 3K88A 3B5MA 3K86A 3PFTA 1W3QA 4Y9IA 4N7RC 2ECRA 1G77A 1YOAA 3NFWA 1WV4A 4XJ2A 2X1JA 2HQ7A 3A6QA 3DB0A 3CB0A 1WLIA 3FGEA 3BNKA 1USFA 1XXOA 3U34A 3KYGA 5CHEC 1Y30A 3FKHA 3VY2A 1T9MA 2QEAA 3R5ZA 3ZOGA 4QVBA 3DMBA 4R82A 2GJGA 2R0XA 3F7EA 4F07A 2QCKA 4XHYA 4YBNA 1W3OA 1XHNA 4HMXA 1EJEA 3AWHA 1G76A 2PTFA 3R5YA 2Q9KA 4IRAA 2HHZA 1WGBA 3A20A 3EC6A 3IN6A 2D37A 2ASFA 1DNLA 2IABA 3TGVA 2OU5A 2NR4A 3RH7A 4HMUA 5JABA 2R6VA 1WLKA 3ZODA 2FURA 1NRGA 3R5RA 1RFEA 1RZ1A 1CI0A 1FLMA 2D38A 4Z85A 5CHOA 1RZ0A 4HMSA 3CP3A 3U5WA 3HMZA 4HMWA 3ZOHA 3AMFA 5ESCA 1TY9A 2FG9A 2ED4A 3HY8A 4L82A 2ECUA 1VL7A 1I0SA 2HTDA 1G79A 1W9AA 3BPKA 3ZOCA 3K87A 1JNWA 4HMTA 3DNHA 3R5WA 2D5MA 5BNCA 3U0IA 1YLNA 1USCA 2E83A 3ZOEA 3H96A 4HMVA 1AXJA 2RDEA 4HX6A 2ARZA 3A6RA 3VYAA 4YWNA 1G78A 2IG6A 2OL5A 1I0RA 3GASA 2X1KA 2I51A 3E4VA 3ZOFA 3BA3A 2RE7A 2FHQA 3KYFA 2I02A 2HTIA 1W3RA 2AQ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W3P A;  2HQ9 A;  3R5P A;  4ZKY A;  2A2J A;  3VY5 A;  3SWJ A;  3U35 A;  2IML A;  2VPA A;  2D36 A;  3R5L A;  3K88 A;  3B5M A;  3K86 A;  3PFT A;  1W3Q A;  4Y9I A;  4N7R C;  2ECR A;  1G77 A;  1YOA A;  3NFW A;  1WV4 A;  4XJ2 A;  2X1J A;  2HQ7 A;  3A6Q A;  3DB0 A;  3CB0 A;  1WLI A;  3FGE A;  3BNK A;  1USF A;  1XXO A;  3U34 A;  3KYG A;  5CHE C;  1Y30 A;  3FKH A;  3VY2 A;  1T9M A;  2QEA A;  3R5Z A;  3ZOG A;  4QVB A;  3DMB A;  4R82 A;  2GJG A;  2R0X A;  3F7E A;  4F07 A;  2QCK A;  4XHY A;  4YBN A;  1W3O A;  1XHN A;  4HMX A;  1EJE A;  3AWH A;  1G76 A;  2PTF A;  3R5Y A;  2Q9K A;  4IRA A;  2HHZ A;  1WGB A;  3A20 A;  3EC6 A;  3IN6 A;  2D37 A;  2ASF A;  1DNL A;  2IAB A;  3TGV A;  2OU5 A;  2NR4 A;  3RH7 A;  4HMU A;  5JAB A;  2R6V A;  1WLK A;  3ZOD A;  2FUR A;  1NRG A;  3R5R A;  1RFE A;  1RZ1 A;  1CI0 A;  1FLM A;  2D38 A;  4Z85 A;  5CHO A;  1RZ0 A;  4HMS A;  3CP3 A;  3U5W A;  3HMZ A;  4HMW A;  3ZOH A;  3AMF A;  5ESC A;  1TY9 A;  2FG9 A;  2ED4 A;  3HY8 A;  4L82 A;  2ECU A;  1VL7 A;  1I0S A;  2HTD A;  1G79 A;  1W9A A;  3BPK A;  3ZOC A;  3K87 A;  1JNW A;  4HMT A;  3DNH A;  3R5W A;  2D5M A;  5BNC A;  3U0I A;  1YLN A;  1USC A;  2E83 A;  3ZOE A;  3H96 A;  4HMV A;  1AXJ A;  2RDE A;  4HX6 A;  2ARZ A;  3A6R A;  3VYA A;  4YWN A;  1G78 A;  2IG6 A;  2OL5 A;  1I0R A;  3GAS A;  2X1K A;  2I51 A;  3E4V A;  3ZOF A;  3BA3 A;  2RE7 A;  2FHQ A;  3KYF A;  2I02 A;  2HTI A;  1W3R A;  2AQ6 A; 
#chains in the Genus database with same CATH topology
 1W3P A;  2HQ9 A;  3R5P A;  4ZKY A;  2A2J A;  3VY5 A;  3SWJ A;  3U35 A;  4HKH A;  2IML A;  2VPA A;  2D36 A;  3HE1 A;  3R5L A;  3K88 A;  3B5M A;  3K86 A;  3PFT A;  2K4Q A;  1W3Q A;  4Y9I A;  4N7R C;  2ECR A;  1G77 A;  1YOA A;  3EAA A;  3NFW A;  1WV4 A;  4XJ2 A;  2X1J A;  2HQ7 A;  3A6Q A;  3DB0 A;  3CB0 A;  1WLI A;  3FGE A;  3BNK A;  1USF A;  1XXO A;  3U34 A;  3KYG A;  5CHE C;  1Y30 A;  3FKH A;  3VY2 A;  1T9M A;  2QEA A;  3R5Z A;  3ZOG A;  4QVB A;  3DMB A;  4R82 A;  2GJG A;  2R0X A;  3F7E A;  1Y12 A;  4F07 A;  4W64 A;  2QCK A;  4XHY A;  4YBN A;  1W3O A;  1XHN A;  4HMX A;  1EJE A;  4TV4 A;  3AWH A;  1G76 A;  2PTF A;  3R5Y A;  2Q9K A;  4IRA A;  2HHZ A;  1WGB A;  3A20 A;  3EC6 A;  3IN6 A;  2D37 A;  2ASF A;  1DNL A;  2IAB A;  3TGV A;  2OU5 A;  2NR4 A;  3RH7 A;  4HMU A;  5JAB A;  2R6V A;  2GUJ A;  2P5Z X;  1WLK A;  3ZOD A;  2FUR A;  1NRG A;  3R5R A;  1RFE A;  1RZ1 A;  1CI0 A;  1FLM A;  2D38 A;  4Z85 A;  5CHO A;  1RZ0 A;  4HMS A;  3CP3 A;  3U5W A;  3HMZ A;  4HMW A;  3V4H A;  3ZOH A;  3AMF A;  5ESC A;  1TY9 A;  2FG9 A;  2ED4 A;  3HY8 A;  4L82 A;  2ECU A;  1VL7 A;  1I0S A;  2HTD A;  1G79 A;  1W9A A;  3BPK A;  4UHV A;  3K87 A;  3ZOC A;  1JNW A;  4HMT A;  3DNH A;  3R5W A;  2D5M A;  4MTK A;  5BNC A;  3U0I A;  1YLN A;  1USC A;  2E83 A;  3ZOE A;  3H96 A;  4HMV A;  1AXJ A;  2RDE A;  4HX6 A;  2ARZ A;  3A6R A;  3VYA A;  4YWN A;  1G78 A;  2IG6 A;  2OL5 A;  1I0R A;  3GAS A;  2X1K A;  2I51 A;  3E4V A;  3ZOF A;  3BA3 A;  2RE7 A;  2FHQ A;  3KYF A;  2I02 A;  2HTI A;  2L1T A;  1W3R A;  2AQ6 A; 
#chains in the Genus database with same CATH homology
 1W3P A;  2HQ9 A;  3R5P A;  4ZKY A;  2A2J A;  3VY5 A;  3SWJ A;  3U35 A;  2IML A;  2VPA A;  2D36 A;  3R5L A;  3K88 A;  3B5M A;  3K86 A;  3PFT A;  1W3Q A;  4Y9I A;  4N7R C;  2ECR A;  1G77 A;  1YOA A;  3NFW A;  1WV4 A;  4XJ2 A;  2X1J A;  2HQ7 A;  3A6Q A;  3DB0 A;  3CB0 A;  1WLI A;  3FGE A;  3BNK A;  1USF A;  1XXO A;  3U34 A;  3KYG A;  5CHE C;  1Y30 A;  3FKH A;  3VY2 A;  1T9M A;  2QEA A;  3R5Z A;  3ZOG A;  4QVB A;  3DMB A;  4R82 A;  2GJG A;  2R0X A;  3F7E A;  4F07 A;  2QCK A;  4XHY A;  4YBN A;  1W3O A;  1XHN A;  4HMX A;  1EJE A;  3AWH A;  1G76 A;  2PTF A;  3R5Y A;  2Q9K A;  4IRA A;  2HHZ A;  1WGB A;  3A20 A;  3EC6 A;  3IN6 A;  2D37 A;  2ASF A;  1DNL A;  2IAB A;  3TGV A;  2OU5 A;  2NR4 A;  3RH7 A;  4HMU A;  5JAB A;  2R6V A;  1WLK A;  3ZOD A;  2FUR A;  1NRG A;  3R5R A;  1RFE A;  1RZ1 A;  1CI0 A;  1FLM A;  2D38 A;  4Z85 A;  5CHO A;  1RZ0 A;  4HMS A;  3CP3 A;  3U5W A;  3HMZ A;  4HMW A;  3ZOH A;  3AMF A;  5ESC A;  1TY9 A;  2FG9 A;  2ED4 A;  3HY8 A;  4L82 A;  2ECU A;  1VL7 A;  1I0S A;  2HTD A;  1G79 A;  1W9A A;  3BPK A;  3ZOC A;  3K87 A;  1JNW A;  4HMT A;  3DNH A;  3R5W A;  2D5M A;  5BNC A;  3U0I A;  1YLN A;  1USC A;  2E83 A;  3ZOE A;  3H96 A;  4HMV A;  1AXJ A;  2RDE A;  4HX6 A;  2ARZ A;  3A6R A;  3VYA A;  4YWN A;  1G78 A;  2IG6 A;  2OL5 A;  1I0R A;  3GAS A;  2X1K A;  2I51 A;  3E4V A;  3ZOF A;  3BA3 A;  2RE7 A;  2FHQ A;  3KYF A;  2I02 A;  2HTI A;  1W3R A;  2AQ6 A; 
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