1W3PA

Nima from d. radiodurans with a his71-pyruvate residue
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
215
structure length
204
Chain Sequence
SYYHHHHHHLSDFYDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERVFPGLKVGETTRPISEDDLKRTSVYSLSIDRWSGKENWAEQAIQEEDWPALGPEWLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI4 (191-194)TI1 (11-14)AH2 (24-33)TI3 (183-186)TVIII3 (177-180)S1 (36-44)TVIII1 (101-104)3H2 (63-65)TI2 (45-48)S5 (85-99)S3 (67-71)S4 (78-79)TII2 (144-147)S7 (162-175)TIV2 (83-86)S6 (108-122)AH3 (125-139)TIV3 (145-148)TIV4 (146-149)AH4 (154-159)TIV5 (190-193)TIV1 (17-20)S2 (50-62)3H3 (104-106)3H1 (3-5)TII1 (140-143)Updating...
connected with : NaN
publication title Structural Basis of 5-Nitroimidazole Antibiotic Resistance: The Crystal Structure of Nima from Deinococcus Radiodurans
pubmed doi rcsb
molecule keywords NIMA-RELATED PROTEIN
molecule tags Antibiotic resistance
source organism Deinococcus radiodurans
total genus 48
structure length 204
sequence length 215
ec nomenclature
pdb deposition date 2004-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1w3pA00
3DMBA 3K87A 4N7RC 1WV4A 2HHZA 1RFEA 2ECRA 1W9AA 3R5LA 2IABA 5CHEC 2HQ7A 5JABA 1RZ0A 4HMVA 2ASFA 4YWNA 3BPKA 3F7EA 2I51A 3ZOEA 2Q9KA 1TY9A 2D36A 1EJEA 2OL5A 1XHNA 1XXOA 3ZOGA 3ZOCA 3R5WA 1USFA 1CI0A 2FG9A 3TGVA 2RDEA 4HMXA 3GASA 3B5MA 1RZ1A 3BNKA 3ZOFA 3ZODA 3VYAA 4Y9IA 3CB0A 2HTIA 2FURA 1I0SA 2VPAA 1W3PA 3IN6A 1W3QA 3AWHA 2E83A 2D38A 2GJGA 3RH7A 4L82A 3DNHA 4HMSA 2PTFA 3ZOHA 2R6VA 3U34A 3HY8A 2A2JA 1NRGA 1YOAA 3A6RA 3K86A 4XJ2A 1G78A 4QVBA 5ESCA 3BA3A 2I02A 2ED4A 1G79A 3EC6A 3FKHA 2AQ6A 3U35A 1W3RA 4HMUA 3SWJA 1W3OA 2HTDA 2D5MA 4XHYA 4R82A 3AMFA 1VL7A 1YLNA 4IRAA 4HX6A 4Z85A 4F07A 1DNLA 5BNCA 5CHOA 2ECUA 2QEAA 2ARZA 2HQ9A 3R5ZA 3FGEA 3CP3A 2D37A 1I0RA 4YBNA 1T9MA 4HMWA 4ZKYA 3HMZA 2OU5A 3H96A 1WGBA 3U5WA 2X1JA 3KYFA 3R5PA 2NR4A 1G76A 2RE7A 4HMTA 2IG6A 2X1KA 3R5YA 1USCA 1WLKA 3K88A 3VY5A 1FLMA 1WLIA 3A6QA 3NFWA 2IMLA 3PFTA 1JNWA 3A20A 3E4VA 2QCKA 2FHQA 3U0IA 3VY2A 3DB0A 1Y30A 2R0XA 1AXJA 3R5RA 1G77A 3KYGA
chains in the Genus database with same CATH superfamily
3DMBA 3K87A 4N7RC 1WV4A 2HHZA 1RFEA 2ECRA 1W9AA 3R5LA 2IABA 5CHEC 2HQ7A 5JABA 1RZ0A 4HMVA 2ASFA 4YWNA 3BPKA 3F7EA 2I51A 3ZOEA 2Q9KA 1TY9A 2D36A 1EJEA 2OL5A 1XHNA 1XXOA 3ZOGA 3ZOCA 3R5WA 1USFA 1CI0A 2FG9A 3TGVA 2RDEA 4HMXA 3GASA 3V4HA 3B5MA 1RZ1A 3BNKA 3ZOFA 3ZODA 3VYAA 4Y9IA 3CB0A 2HTIA 2FURA 1I0SA 2VPAA 1W3PA 3IN6A 1W3QA 3AWHA 2E83A 2D38A 2GJGA 3RH7A 4L82A 3DNHA 4HMSA 2PTFA 3ZOHA 2R6VA 4W64A 2P5ZX 3U34A 3HY8A 2A2JA 1NRGA 1YOAA 3A6RA 3K86A 4XJ2A 1G78A 4QVBA 5ESCA 3BA3A 2I02A 2ED4A 1G79A 3EC6A 3FKHA 2AQ6A 3U35A 1W3RA 4HMUA 3SWJA 1W3OA 2HTDA 2D5MA 4MTKA 4XHYA 4R82A 3AMFA 1VL7A 1YLNA 4IRAA 4HX6A 4Z85A 4F07A 1Y12A 1DNLA 5BNCA 5CHOA 2ECUA 2QEAA 2L1TA 2ARZA 2HQ9A 3R5ZA 2GUJA 3FGEA 3CP3A 2D37A 1I0RA 4YBNA 1T9MA 4HMWA 4TV4A 4ZKYA 3HMZA 2OU5A 3H96A 2K4QA 1WGBA 3U5WA 2X1JA 3KYFA 3R5PA 2NR4A 1G76A 2RE7A 3EAAA 4HMTA 2IG6A 2X1KA 3R5YA 1USCA 1WLKA 3K88A 4HKHA 3VY5A 1FLMA 1WLIA 3A6QA 3NFWA 2IMLA 3PFTA 4UHVA 1JNWA 3A20A 3HE1A 3E4VA 2QCKA 2FHQA 3U0IA 3VY2A 3DB0A 1Y30A 2R0XA 1AXJA 3R5RA 1G77A 3KYGA
chains in the Genus database with same CATH topology
3DMBA 3K87A 4N7RC 1WV4A 2HHZA 1RFEA 2ECRA 1W9AA 3R5LA 2IABA 5CHEC 2HQ7A 5JABA 1RZ0A 4HMVA 2ASFA 4YWNA 3BPKA 3F7EA 2I51A 3ZOEA 2Q9KA 1TY9A 2D36A 1EJEA 2OL5A 1XHNA 1XXOA 3ZOGA 3ZOCA 3R5WA 1USFA 1CI0A 2FG9A 3TGVA 2RDEA 4HMXA 3GASA 3B5MA 1RZ1A 3BNKA 3ZOFA 3ZODA 3VYAA 4Y9IA 3CB0A 2HTIA 2FURA 1I0SA 2VPAA 1W3PA 3IN6A 1W3QA 3AWHA 2E83A 2D38A 2GJGA 3RH7A 4L82A 3DNHA 4HMSA 2PTFA 3ZOHA 2R6VA 3U34A 3HY8A 2A2JA 1NRGA 1YOAA 3A6RA 3K86A 4XJ2A 1G78A 4QVBA 5ESCA 3BA3A 2I02A 2ED4A 1G79A 3EC6A 3FKHA 2AQ6A 3U35A 1W3RA 4HMUA 3SWJA 1W3OA 2HTDA 2D5MA 4XHYA 4R82A 3AMFA 1VL7A 1YLNA 4IRAA 4HX6A 4Z85A 4F07A 1DNLA 5BNCA 5CHOA 2ECUA 2QEAA 2ARZA 2HQ9A 3R5ZA 3FGEA 3CP3A 2D37A 1I0RA 4YBNA 1T9MA 4HMWA 4ZKYA 3HMZA 2OU5A 3H96A 1WGBA 3U5WA 2X1JA 3KYFA 3R5PA 2NR4A 1G76A 2RE7A 4HMTA 2IG6A 2X1KA 3R5YA 1USCA 1WLKA 3K88A 3VY5A 1FLMA 1WLIA 3A6QA 3NFWA 2IMLA 3PFTA 1JNWA 3A20A 3E4VA 2QCKA 2FHQA 3U0IA 3VY2A 3DB0A 1Y30A 2R0XA 1AXJA 3R5RA 1G77A 3KYGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DMB A;  3K87 A;  4N7R C;  1WV4 A;  2HHZ A;  1RFE A;  2ECR A;  1W9A A;  3R5L A;  2IAB A;  5CHE C;  2HQ7 A;  5JAB A;  1RZ0 A;  4HMV A;  2ASF A;  4YWN A;  3BPK A;  3F7E A;  2I51 A;  3ZOE A;  2Q9K A;  1TY9 A;  2D36 A;  1EJE A;  2OL5 A;  1XHN A;  1XXO A;  3ZOG A;  3ZOC A;  3R5W A;  1USF A;  1CI0 A;  2FG9 A;  3TGV A;  2RDE A;  4HMX A;  3GAS A;  3B5M A;  1RZ1 A;  3BNK A;  3ZOF A;  3ZOD A;  3VYA A;  4Y9I A;  3CB0 A;  2HTI A;  2FUR A;  1I0S A;  2VPA A;  1W3P A;  3IN6 A;  1W3Q A;  3AWH A;  2E83 A;  2D38 A;  2GJG A;  3RH7 A;  4L82 A;  3DNH A;  4HMS A;  2PTF A;  3ZOH A;  2R6V A;  3U34 A;  3HY8 A;  2A2J A;  1NRG A;  1YOA A;  3A6R A;  3K86 A;  4XJ2 A;  1G78 A;  4QVB A;  5ESC A;  3BA3 A;  2I02 A;  2ED4 A;  1G79 A;  3EC6 A;  3FKH A;  2AQ6 A;  3U35 A;  1W3R A;  4HMU A;  3SWJ A;  1W3O A;  2HTD A;  2D5M A;  4XHY A;  4R82 A;  3AMF A;  1VL7 A;  1YLN A;  4IRA A;  4HX6 A;  4Z85 A;  4F07 A;  1DNL A;  5BNC A;  5CHO A;  2ECU A;  2QEA A;  2ARZ A;  2HQ9 A;  3R5Z A;  3FGE A;  3CP3 A;  2D37 A;  1I0R A;  4YBN A;  1T9M A;  4HMW A;  4ZKY A;  3HMZ A;  2OU5 A;  3H96 A;  1WGB A;  3U5W A;  2X1J A;  3KYF A;  3R5P A;  2NR4 A;  1G76 A;  2RE7 A;  4HMT A;  2IG6 A;  2X1K A;  3R5Y A;  1USC A;  1WLK A;  3K88 A;  3VY5 A;  1FLM A;  1WLI A;  3A6Q A;  3NFW A;  2IML A;  3PFT A;  1JNW A;  3A20 A;  3E4V A;  2QCK A;  2FHQ A;  3U0I A;  3VY2 A;  3DB0 A;  1Y30 A;  2R0X A;  1AXJ A;  3R5R A;  1G77 A;  3KYG A; 
#chains in the Genus database with same CATH topology
 3DMB A;  3K87 A;  4N7R C;  1WV4 A;  2HHZ A;  1RFE A;  2ECR A;  1W9A A;  3R5L A;  2IAB A;  5CHE C;  2HQ7 A;  5JAB A;  1RZ0 A;  4HMV A;  2ASF A;  4YWN A;  3BPK A;  3F7E A;  2I51 A;  3ZOE A;  2Q9K A;  1TY9 A;  2D36 A;  1EJE A;  2OL5 A;  1XHN A;  1XXO A;  3ZOG A;  3ZOC A;  3R5W A;  1USF A;  1CI0 A;  2FG9 A;  3TGV A;  2RDE A;  4HMX A;  3GAS A;  3V4H A;  3B5M A;  1RZ1 A;  3BNK A;  3ZOF A;  3ZOD A;  3VYA A;  4Y9I A;  3CB0 A;  2HTI A;  2FUR A;  1I0S A;  2VPA A;  1W3P A;  3IN6 A;  1W3Q A;  3AWH A;  2E83 A;  2D38 A;  2GJG A;  3RH7 A;  4L82 A;  3DNH A;  4HMS A;  2PTF A;  3ZOH A;  2R6V A;  4W64 A;  2P5Z X;  3U34 A;  3HY8 A;  2A2J A;  1NRG A;  1YOA A;  3A6R A;  3K86 A;  4XJ2 A;  1G78 A;  4QVB A;  5ESC A;  3BA3 A;  2I02 A;  2ED4 A;  1G79 A;  3EC6 A;  3FKH A;  2AQ6 A;  3U35 A;  1W3R A;  4HMU A;  3SWJ A;  1W3O A;  2HTD A;  2D5M A;  4MTK A;  4XHY A;  4R82 A;  3AMF A;  1VL7 A;  1YLN A;  4IRA A;  4HX6 A;  4Z85 A;  4F07 A;  1Y12 A;  1DNL A;  5BNC A;  5CHO A;  2ECU A;  2QEA A;  2L1T A;  2ARZ A;  2HQ9 A;  3R5Z A;  2GUJ A;  3FGE A;  3CP3 A;  2D37 A;  1I0R A;  4YBN A;  1T9M A;  4HMW A;  4TV4 A;  4ZKY A;  3HMZ A;  2OU5 A;  3H96 A;  2K4Q A;  1WGB A;  3U5W A;  2X1J A;  3KYF A;  3R5P A;  2NR4 A;  1G76 A;  2RE7 A;  3EAA A;  4HMT A;  2IG6 A;  2X1K A;  3R5Y A;  1USC A;  1WLK A;  3K88 A;  4HKH A;  3VY5 A;  1FLM A;  1WLI A;  3A6Q A;  3NFW A;  2IML A;  3PFT A;  4UHV A;  1JNW A;  3A20 A;  3HE1 A;  3E4V A;  2QCK A;  2FHQ A;  3U0I A;  3VY2 A;  3DB0 A;  1Y30 A;  2R0X A;  1AXJ A;  3R5R A;  1G77 A;  3KYG A; 
#chains in the Genus database with same CATH homology
 3DMB A;  3K87 A;  4N7R C;  1WV4 A;  2HHZ A;  1RFE A;  2ECR A;  1W9A A;  3R5L A;  2IAB A;  5CHE C;  2HQ7 A;  5JAB A;  1RZ0 A;  4HMV A;  2ASF A;  4YWN A;  3BPK A;  3F7E A;  2I51 A;  3ZOE A;  2Q9K A;  1TY9 A;  2D36 A;  1EJE A;  2OL5 A;  1XHN A;  1XXO A;  3ZOG A;  3ZOC A;  3R5W A;  1USF A;  1CI0 A;  2FG9 A;  3TGV A;  2RDE A;  4HMX A;  3GAS A;  3B5M A;  1RZ1 A;  3BNK A;  3ZOF A;  3ZOD A;  3VYA A;  4Y9I A;  3CB0 A;  2HTI A;  2FUR A;  1I0S A;  2VPA A;  1W3P A;  3IN6 A;  1W3Q A;  3AWH A;  2E83 A;  2D38 A;  2GJG A;  3RH7 A;  4L82 A;  3DNH A;  4HMS A;  2PTF A;  3ZOH A;  2R6V A;  3U34 A;  3HY8 A;  2A2J A;  1NRG A;  1YOA A;  3A6R A;  3K86 A;  4XJ2 A;  1G78 A;  4QVB A;  5ESC A;  3BA3 A;  2I02 A;  2ED4 A;  1G79 A;  3EC6 A;  3FKH A;  2AQ6 A;  3U35 A;  1W3R A;  4HMU A;  3SWJ A;  1W3O A;  2HTD A;  2D5M A;  4XHY A;  4R82 A;  3AMF A;  1VL7 A;  1YLN A;  4IRA A;  4HX6 A;  4Z85 A;  4F07 A;  1DNL A;  5BNC A;  5CHO A;  2ECU A;  2QEA A;  2ARZ A;  2HQ9 A;  3R5Z A;  3FGE A;  3CP3 A;  2D37 A;  1I0R A;  4YBN A;  1T9M A;  4HMW A;  4ZKY A;  3HMZ A;  2OU5 A;  3H96 A;  1WGB A;  3U5W A;  2X1J A;  3KYF A;  3R5P A;  2NR4 A;  1G76 A;  2RE7 A;  4HMT A;  2IG6 A;  2X1K A;  3R5Y A;  1USC A;  1WLK A;  3K88 A;  3VY5 A;  1FLM A;  1WLI A;  3A6Q A;  3NFW A;  2IML A;  3PFT A;  1JNW A;  3A20 A;  3E4V A;  2QCK A;  2FHQ A;  3U0I A;  3VY2 A;  3DB0 A;  1Y30 A;  2R0X A;  1AXJ A;  3R5R A;  1G77 A;  3KYG A; 
1W3PA 1W3QA 1W3RA 2V7SA 2VPAA 2X1JA 2X1KA 5MQLA 5MQTA
similar chains in the Genus database (40% sequence similarity)
None
similar chains in the pdb database (40% sequence similarity)

 
#similar chains in the Genus database (40% sequence similarity)
1W3P A; 1W3Q A; 1W3R A; 2V7S A; 2VPA A; 2X1J A; 2X1K A; 5MQL A; 5MQT A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)


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