1W3RA

Nima from d. radiodurans with metronidazole and pyruvate
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
215
structure length
204
Chain Sequence
SYYHHHHHHLSDFYDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERVFPGLKVGETTRPISEDDLKRTSVYSLSIDRWSGKENWAEQAIQEEDWPALGPEWLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV5 (191-194)TI1 (11-14)AH2 (24-33)TI3 (183-186)TVIII3 (177-180)S1 (36-44)TVIII1 (101-104)3H2 (63-65)TI2 (45-48)S5 (85-99)S4 (67-71)TII2 (144-147)AH3 (125-139)TIV2 (145-148)TIV3 (146-149)AH4 (154-159)S7 (162-175)TIV4 (190-193)TIV1 (17-20)S2 (50-58)S3 (60-62)3H3 (104-106)S6 (108-123)TII1 (140-143)3H1 (3-5)Updating...
connected with : NaN
publication title Structural Basis of 5-Nitroimidazole Antibiotic Resistance: The Crystal Structure of Nima from Deinococcus Radiodurans
pubmed doi rcsb
molecule keywords NIMA-RELATED PROTEIN
molecule tags Antibiotic resistance
source organism Deinococcus radiodurans
total genus 48
structure length 204
sequence length 215
ec nomenclature
pdb deposition date 2004-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1w3rA00
1EJEA 4YBNA 1T9MA 3VY2A 2ECUA 2NR4A 2VPAA 1W3QA 2FHQA 4HMTA 1I0RA 2HTDA 4R82A 2HQ7A 3R5RA 2D36A 3SWJA 2IMLA 3AWHA 3BA3A 1WGBA 3R5LA 2FURA 3HY8A 1YLNA 3ZOGA 3A6RA 4HMSA 3R5YA 3ZOEA 2ED4A 2OL5A 3F7EA 2HTIA 3TGVA 3ZODA 1DNLA 4ZKYA 3EC6A 2HQ9A 2Q9KA 1G78A 1NRGA 3K86A 5CHEC 1RZ0A 3IN6A 3K88A 4Z85A 1XHNA 1USCA 2RDEA 3GASA 1W3OA 1G79A 3KYGA 3R5PA 3AMFA 3NFWA 2ARZA 4F07A 1RZ1A 2E83A 1WLIA 2I51A 2R0XA 3H96A 2D37A 3ZOHA 3U5WA 3DNHA 3VYAA 4N7RC 1FLMA 2X1KA 5BNCA 2QCKA 3RH7A 5JABA 2AQ6A 4HMWA 3U0IA 1Y30A 1WLKA 3DMBA 4HMXA 4HMVA 3R5ZA 1I0SA 4YWNA 3K87A 2D38A 4L82A 1W3RA 4QVBA 1AXJA 2HHZA 5CHOA 3E4VA 5ESCA 3DB0A 2OU5A 3VY5A 1RFEA 1TY9A 4XJ2A 2IG6A 1XXOA 1W3PA 1VL7A 1USFA 1CI0A 1WV4A 3FGEA 1JNWA 2FG9A 3KYFA 3ZOFA 3CP3A 3A6QA 4IRAA 3ZOCA 2ECRA 4XHYA 2RE7A 2GJGA 3CB0A 1G76A 2X1JA 4HMUA 2I02A 3FKHA 4Y9IA 3U34A 2R6VA 3U35A 3R5WA 3B5MA 1G77A 1YOAA 3BNKA 4HX6A 2A2JA 3BPKA 1W9AA 3PFTA 2ASFA 2IABA 3HMZA 2D5MA 2QEAA 3A20A 2PTFA
chains in the Genus database with same CATH superfamily
1EJEA 4YBNA 1T9MA 2P5ZX 3VY2A 2ECUA 2NR4A 2VPAA 1W3QA 4UHVA 2FHQA 4HMTA 1I0RA 2HTDA 4W64A 3HE1A 2HQ7A 3R5RA 4R82A 2D36A 3SWJA 2IMLA 3AWHA 3BA3A 1WGBA 3R5LA 2FURA 3HY8A 1YLNA 1Y12A 3ZOGA 3A6RA 4HMSA 3R5YA 3ZOEA 2ED4A 2OL5A 3F7EA 2HTIA 3TGVA 3ZODA 1DNLA 4ZKYA 3EC6A 2HQ9A 2Q9KA 1G78A 1NRGA 3K86A 5CHEC 1RZ0A 3IN6A 3K88A 4Z85A 1XHNA 1USCA 2RDEA 3GASA 1W3OA 1G79A 3KYGA 3R5PA 3AMFA 3EAAA 3NFWA 2ARZA 4F07A 1RZ1A 2E83A 1WLIA 2I51A 2R0XA 4HKHA 3H96A 2D37A 3ZOHA 3U5WA 3DNHA 3VYAA 4N7RC 1FLMA 2X1KA 5BNCA 2QCKA 3RH7A 5JABA 2AQ6A 4HMWA 2GUJA 3U0IA 1Y30A 1WLKA 3DMBA 4HMXA 4MTKA 4HMVA 3V4HA 3R5ZA 1I0SA 4YWNA 3K87A 2D38A 4L82A 1W3RA 4QVBA 1AXJA 2HHZA 5CHOA 3E4VA 5ESCA 3DB0A 2OU5A 3VY5A 1RFEA 1TY9A 4XJ2A 2IG6A 1XXOA 1W3PA 1VL7A 1USFA 1CI0A 1WV4A 3FGEA 1JNWA 2FG9A 3KYFA 3ZOFA 3CP3A 3A6QA 4IRAA 3ZOCA 2ECRA 4XHYA 2RE7A 2GJGA 3CB0A 1G76A 2K4QA 2L1TA 2I02A 2X1JA 3FKHA 4HMUA 2R6VA 4Y9IA 3U34A 3U35A 3R5WA 3B5MA 1G77A 1YOAA 3BNKA 4HX6A 2A2JA 3BPKA 1W9AA 3PFTA 2ASFA 2IABA 3HMZA 2D5MA 2QEAA 3A20A 4TV4A 2PTFA
chains in the Genus database with same CATH topology
1EJEA 4YBNA 1T9MA 3VY2A 2ECUA 2NR4A 2VPAA 1W3QA 2FHQA 4HMTA 1I0RA 2HTDA 4R82A 2HQ7A 3R5RA 2D36A 3SWJA 2IMLA 3AWHA 3BA3A 1WGBA 3R5LA 2FURA 3HY8A 1YLNA 3ZOGA 3A6RA 4HMSA 3R5YA 3ZOEA 2ED4A 2OL5A 3F7EA 2HTIA 3TGVA 3ZODA 1DNLA 4ZKYA 3EC6A 2HQ9A 2Q9KA 1G78A 1NRGA 3K86A 5CHEC 1RZ0A 3IN6A 3K88A 4Z85A 1XHNA 1USCA 2RDEA 3GASA 1W3OA 1G79A 3KYGA 3R5PA 3AMFA 3NFWA 2ARZA 4F07A 1RZ1A 2E83A 1WLIA 2I51A 2R0XA 3H96A 2D37A 3ZOHA 3U5WA 3DNHA 3VYAA 4N7RC 1FLMA 2X1KA 5BNCA 2QCKA 3RH7A 5JABA 2AQ6A 4HMWA 3U0IA 1Y30A 1WLKA 3DMBA 4HMXA 4HMVA 3R5ZA 1I0SA 4YWNA 3K87A 2D38A 4L82A 1W3RA 4QVBA 1AXJA 2HHZA 5CHOA 3E4VA 5ESCA 3DB0A 2OU5A 3VY5A 1RFEA 1TY9A 4XJ2A 2IG6A 1XXOA 1W3PA 1VL7A 1USFA 1CI0A 1WV4A 3FGEA 1JNWA 2FG9A 3KYFA 3ZOFA 3CP3A 3A6QA 4IRAA 3ZOCA 2ECRA 4XHYA 2RE7A 2GJGA 3CB0A 1G76A 2X1JA 4HMUA 2I02A 3FKHA 4Y9IA 3U34A 2R6VA 3U35A 3R5WA 3B5MA 1G77A 1YOAA 3BNKA 4HX6A 2A2JA 3BPKA 1W9AA 3PFTA 2ASFA 2IABA 3HMZA 2D5MA 2QEAA 3A20A 2PTFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EJE A;  4YBN A;  1T9M A;  3VY2 A;  2ECU A;  2NR4 A;  2VPA A;  1W3Q A;  2FHQ A;  4HMT A;  1I0R A;  2HTD A;  4R82 A;  2HQ7 A;  3R5R A;  2D36 A;  3SWJ A;  2IML A;  3AWH A;  3BA3 A;  1WGB A;  3R5L A;  2FUR A;  3HY8 A;  1YLN A;  3ZOG A;  3A6R A;  4HMS A;  3R5Y A;  3ZOE A;  2ED4 A;  2OL5 A;  3F7E A;  2HTI A;  3TGV A;  3ZOD A;  1DNL A;  4ZKY A;  3EC6 A;  2HQ9 A;  2Q9K A;  1G78 A;  1NRG A;  3K86 A;  5CHE C;  1RZ0 A;  3IN6 A;  3K88 A;  4Z85 A;  1XHN A;  1USC A;  2RDE A;  3GAS A;  1W3O A;  1G79 A;  3KYG A;  3R5P A;  3AMF A;  3NFW A;  2ARZ A;  4F07 A;  1RZ1 A;  2E83 A;  1WLI A;  2I51 A;  2R0X A;  3H96 A;  2D37 A;  3ZOH A;  3U5W A;  3DNH A;  3VYA A;  4N7R C;  1FLM A;  2X1K A;  5BNC A;  2QCK A;  3RH7 A;  5JAB A;  2AQ6 A;  4HMW A;  3U0I A;  1Y30 A;  1WLK A;  3DMB A;  4HMX A;  4HMV A;  3R5Z A;  1I0S A;  4YWN A;  3K87 A;  2D38 A;  4L82 A;  1W3R A;  4QVB A;  1AXJ A;  2HHZ A;  5CHO A;  3E4V A;  5ESC A;  3DB0 A;  2OU5 A;  3VY5 A;  1RFE A;  1TY9 A;  4XJ2 A;  2IG6 A;  1XXO A;  1W3P A;  1VL7 A;  1USF A;  1CI0 A;  1WV4 A;  3FGE A;  1JNW A;  2FG9 A;  3KYF A;  3ZOF A;  3CP3 A;  3A6Q A;  4IRA A;  3ZOC A;  2ECR A;  4XHY A;  2RE7 A;  2GJG A;  3CB0 A;  1G76 A;  2X1J A;  4HMU A;  2I02 A;  3FKH A;  4Y9I A;  3U34 A;  2R6V A;  3U35 A;  3R5W A;  3B5M A;  1G77 A;  1YOA A;  3BNK A;  4HX6 A;  2A2J A;  3BPK A;  1W9A A;  3PFT A;  2ASF A;  2IAB A;  3HMZ A;  2D5M A;  2QEA A;  3A20 A;  2PTF A; 
#chains in the Genus database with same CATH topology
 1EJE A;  4YBN A;  1T9M A;  2P5Z X;  3VY2 A;  2ECU A;  2NR4 A;  2VPA A;  1W3Q A;  4UHV A;  2FHQ A;  4HMT A;  1I0R A;  2HTD A;  4W64 A;  3HE1 A;  2HQ7 A;  3R5R A;  4R82 A;  2D36 A;  3SWJ A;  2IML A;  3AWH A;  3BA3 A;  1WGB A;  3R5L A;  2FUR A;  3HY8 A;  1YLN A;  1Y12 A;  3ZOG A;  3A6R A;  4HMS A;  3R5Y A;  3ZOE A;  2ED4 A;  2OL5 A;  3F7E A;  2HTI A;  3TGV A;  3ZOD A;  1DNL A;  4ZKY A;  3EC6 A;  2HQ9 A;  2Q9K A;  1G78 A;  1NRG A;  3K86 A;  5CHE C;  1RZ0 A;  3IN6 A;  3K88 A;  4Z85 A;  1XHN A;  1USC A;  2RDE A;  3GAS A;  1W3O A;  1G79 A;  3KYG A;  3R5P A;  3AMF A;  3EAA A;  3NFW A;  2ARZ A;  4F07 A;  1RZ1 A;  2E83 A;  1WLI A;  2I51 A;  2R0X A;  4HKH A;  3H96 A;  2D37 A;  3ZOH A;  3U5W A;  3DNH A;  3VYA A;  4N7R C;  1FLM A;  2X1K A;  5BNC A;  2QCK A;  3RH7 A;  5JAB A;  2AQ6 A;  4HMW A;  2GUJ A;  3U0I A;  1Y30 A;  1WLK A;  3DMB A;  4HMX A;  4MTK A;  4HMV A;  3V4H A;  3R5Z A;  1I0S A;  4YWN A;  3K87 A;  2D38 A;  4L82 A;  1W3R A;  4QVB A;  1AXJ A;  2HHZ A;  5CHO A;  3E4V A;  5ESC A;  3DB0 A;  2OU5 A;  3VY5 A;  1RFE A;  1TY9 A;  4XJ2 A;  2IG6 A;  1XXO A;  1W3P A;  1VL7 A;  1USF A;  1CI0 A;  1WV4 A;  3FGE A;  1JNW A;  2FG9 A;  3KYF A;  3ZOF A;  3CP3 A;  3A6Q A;  4IRA A;  3ZOC A;  2ECR A;  4XHY A;  2RE7 A;  2GJG A;  3CB0 A;  1G76 A;  2K4Q A;  2L1T A;  2I02 A;  2X1J A;  3FKH A;  4HMU A;  2R6V A;  4Y9I A;  3U34 A;  3U35 A;  3R5W A;  3B5M A;  1G77 A;  1YOA A;  3BNK A;  4HX6 A;  2A2J A;  3BPK A;  1W9A A;  3PFT A;  2ASF A;  2IAB A;  3HMZ A;  2D5M A;  2QEA A;  3A20 A;  4TV4 A;  2PTF A; 
#chains in the Genus database with same CATH homology
 1EJE A;  4YBN A;  1T9M A;  3VY2 A;  2ECU A;  2NR4 A;  2VPA A;  1W3Q A;  2FHQ A;  4HMT A;  1I0R A;  2HTD A;  4R82 A;  2HQ7 A;  3R5R A;  2D36 A;  3SWJ A;  2IML A;  3AWH A;  3BA3 A;  1WGB A;  3R5L A;  2FUR A;  3HY8 A;  1YLN A;  3ZOG A;  3A6R A;  4HMS A;  3R5Y A;  3ZOE A;  2ED4 A;  2OL5 A;  3F7E A;  2HTI A;  3TGV A;  3ZOD A;  1DNL A;  4ZKY A;  3EC6 A;  2HQ9 A;  2Q9K A;  1G78 A;  1NRG A;  3K86 A;  5CHE C;  1RZ0 A;  3IN6 A;  3K88 A;  4Z85 A;  1XHN A;  1USC A;  2RDE A;  3GAS A;  1W3O A;  1G79 A;  3KYG A;  3R5P A;  3AMF A;  3NFW A;  2ARZ A;  4F07 A;  1RZ1 A;  2E83 A;  1WLI A;  2I51 A;  2R0X A;  3H96 A;  2D37 A;  3ZOH A;  3U5W A;  3DNH A;  3VYA A;  4N7R C;  1FLM A;  2X1K A;  5BNC A;  2QCK A;  3RH7 A;  5JAB A;  2AQ6 A;  4HMW A;  3U0I A;  1Y30 A;  1WLK A;  3DMB A;  4HMX A;  4HMV A;  3R5Z A;  1I0S A;  4YWN A;  3K87 A;  2D38 A;  4L82 A;  1W3R A;  4QVB A;  1AXJ A;  2HHZ A;  5CHO A;  3E4V A;  5ESC A;  3DB0 A;  2OU5 A;  3VY5 A;  1RFE A;  1TY9 A;  4XJ2 A;  2IG6 A;  1XXO A;  1W3P A;  1VL7 A;  1USF A;  1CI0 A;  1WV4 A;  3FGE A;  1JNW A;  2FG9 A;  3KYF A;  3ZOF A;  3CP3 A;  3A6Q A;  4IRA A;  3ZOC A;  2ECR A;  4XHY A;  2RE7 A;  2GJG A;  3CB0 A;  1G76 A;  2X1J A;  4HMU A;  2I02 A;  3FKH A;  4Y9I A;  3U34 A;  2R6V A;  3U35 A;  3R5W A;  3B5M A;  1G77 A;  1YOA A;  3BNK A;  4HX6 A;  2A2J A;  3BPK A;  1W9A A;  3PFT A;  2ASF A;  2IAB A;  3HMZ A;  2D5M A;  2QEA A;  3A20 A;  2PTF A; 
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