1W3R | Genus

Total Genus 48

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	48
sequence length	215
structure length	204
Chain Sequence	SYYHHHHHHLSDFYDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERVFPGLKVGETTRPISEDDLKRTSVYSLSIDRWSGKENWAEQAIQEEDWPALGPEWLG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structural Basis of 5-Nitroimidazole Antibiotic Resistance: The Crystal Structure of Nima from Deinococcus Radiodurans pubmed doi rcsb
molecule keywords	NIMA-RELATED PROTEIN
molecule tags	Antibiotic resistance
source organism	Deinococcus radiodurans
total genus	48
structure length	204
sequence length	215
ec nomenclature
pdb deposition date	2004-07-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF12900	Pyridox_ox_2	Pyridoxamine 5'-phosphate oxidase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	1w3rA00

3TGVA 4HMWA 2FG9A 3DMBA 2QEAA 3A20A 2I51A 1WLIA 3IN6A 3SWJA 3FKHA 3HMZA 1XHNA 1WV4A 2IABA 3AWHA 2D36A 3RH7A 2X1KA 1VL7A 1XXOA 5CHEC 1RFEA 1USCA 2R0XA 2AQ6A 1W9AA 2E83A 2HQ9A 3U35A 3AMFA 3EC6A 1TY9A 3DB0A 1WGBA 4HMXA 3K87A 2I02A 2HQ7A 4IRAA 2ECUA 3R5RA 1RZ0A 2HHZA 2VPAA 3R5ZA 1EJEA 3B5MA 1G78A 3A6RA 3BPKA 5BNCA 4Z85A 1I0SA 1USFA 1DNLA 4YBNA 3R5YA 1W3RA 4HMUA 2A2JA 4HMSA 3K86A 2GJGA 3CP3A 3GASA 3ZOHA 2X1JA 3KYGA 3NFWA 1AXJA 4HX6A 3KYFA 1G76A 3R5WA 1Y30A 3ZOFA 3ZODA 1G77A 3CB0A 2FHQA 2ECRA 4QVBA 4XJ2A 4YWNA 3BNKA 1W3PA 3HY8A 2QCKA 3DNHA 1YOAA 3E4VA 2OU5A 4R82A 1G79A 3FGEA 3K88A 4N7RC 3ZOCA 1W3OA 2IG6A 4HMTA 4L82A 2HTIA 1NRGA 5ESCA 1T9MA 1YLNA 3U34A 4Y9IA 2PTFA 2ARZA 2RDEA 3PFTA 2D38A 1WLKA 4XHYA 3F7EA 3U0IA 1JNWA 1RZ1A 2D5MA 3BA3A 4ZKYA 3U5WA 2FURA 2HTDA 4HMVA 3R5LA 3ZOEA 2D37A 2R6VA 3H96A 3R5PA 5CHOA 3VY5A 3ZOGA 5JABA 1CI0A 2ED4A 3A6QA 2RE7A 2IMLA 2OL5A 2Q9KA 1FLMA 2ASFA 3VYAA 4F07A 1W3QA 1I0RA 3VY2A 2NR4A
chains in the Genus database with same CATH superfamily

3TGVA 4HMWA 2FG9A 3DMBA 2QEAA 4HKHA 3A20A 2I51A 1WLIA 3IN6A 3SWJA 3FKHA 3HMZA 1XHNA 1WV4A 2IABA 3AWHA 2D36A 3RH7A 1Y12A 2X1KA 1VL7A 1XXOA 5CHEC 1RFEA 1USCA 2R0XA 2AQ6A 1W9AA 2E83A 2HQ9A 2K4QA 3U35A 3AMFA 3EC6A 1TY9A 2L1TA 3DB0A 1WGBA 4HMXA 3K87A 2I02A 2HQ7A 4IRAA 2ECUA 3R5RA 1RZ0A 2HHZA 2VPAA 3R5ZA 1EJEA 3B5MA 1G78A 3A6RA 3BPKA 5BNCA 3V4HA 4Z85A 1I0SA 1USFA 1DNLA 4YBNA 3R5YA 1W3RA 4HMUA 2A2JA 4HMSA 3K86A 2GJGA 3CP3A 3GASA 3ZOHA 2X1JA 4TV4A 4MTKA 3KYGA 3NFWA 1AXJA 4HX6A 3KYFA 1G76A 3R5WA 1Y30A 3EAAA 3ZOFA 3ZODA 1G77A 3CB0A 2FHQA 2ECRA 4QVBA 4XJ2A 4YWNA 3BNKA 1W3PA 3HY8A 2QCKA 3DNHA 1YOAA 3E4VA 2OU5A 4R82A 1G79A 3FGEA 3K88A 4N7RC 3ZOCA 1W3OA 2IG6A 4HMTA 4L82A 2HTIA 1NRGA 5ESCA 1T9MA 1YLNA 3U34A 4Y9IA 2PTFA 2ARZA 2GUJA 2RDEA 3PFTA 2D38A 1WLKA 4XHYA 3F7EA 3U0IA 1JNWA 1RZ1A 2D5MA 3BA3A 4ZKYA 3U5WA 2FURA 2P5ZX 2HTDA 3HE1A 4HMVA 3R5LA 3ZOEA 2D37A 2R6VA 3H96A 3R5PA 5CHOA 3VY5A 3ZOGA 4UHVA 5JABA 1CI0A 2ED4A 3A6QA 2RE7A 2IMLA 2OL5A 2Q9KA 4W64A 1FLMA 2ASFA 3VYAA 4F07A 1W3QA 1I0RA 3VY2A 2NR4A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3TGV A;  4HMW A;  2FG9 A;  3DMB A;  2QEA A;  3A20 A;  2I51 A;  1WLI A;  3IN6 A;  3SWJ A;  3FKH A;  3HMZ A;  1XHN A;  1WV4 A;  2IAB A;  3AWH A;  2D36 A;  3RH7 A;  2X1K A;  1VL7 A;  1XXO A;  5CHE C;  1RFE A;  1USC A;  2R0X A;  2AQ6 A;  1W9A A;  2E83 A;  2HQ9 A;  3U35 A;  3AMF A;  3EC6 A;  1TY9 A;  3DB0 A;  1WGB A;  4HMX A;  3K87 A;  2I02 A;  2HQ7 A;  4IRA A;  2ECU A;  3R5R A;  1RZ0 A;  2HHZ A;  2VPA A;  3R5Z A;  1EJE A;  3B5M A;  1G78 A;  3A6R A;  3BPK A;  5BNC A;  4Z85 A;  1I0S A;  1USF A;  1DNL A;  4YBN A;  3R5Y A;  1W3R A;  4HMU A;  2A2J A;  4HMS A;  3K86 A;  2GJG A;  3CP3 A;  3GAS A;  3ZOH A;  2X1J A;  3KYG A;  3NFW A;  1AXJ A;  4HX6 A;  3KYF A;  1G76 A;  3R5W A;  1Y30 A;  3ZOF A;  3ZOD A;  1G77 A;  3CB0 A;  2FHQ A;  2ECR A;  4QVB A;  4XJ2 A;  4YWN A;  3BNK A;  1W3P A;  3HY8 A;  2QCK A;  3DNH A;  1YOA A;  3E4V A;  2OU5 A;  4R82 A;  1G79 A;  3FGE A;  3K88 A;  4N7R C;  3ZOC A;  1W3O A;  2IG6 A;  4HMT A;  4L82 A;  2HTI A;  1NRG A;  5ESC A;  1T9M A;  1YLN A;  3U34 A;  4Y9I A;  2PTF A;  2ARZ A;  2RDE A;  3PFT A;  2D38 A;  1WLK A;  4XHY A;  3F7E A;  3U0I A;  1JNW A;  1RZ1 A;  2D5M A;  3BA3 A;  4ZKY A;  3U5W A;  2FUR A;  2HTD A;  4HMV A;  3R5L A;  3ZOE A;  2D37 A;  2R6V A;  3H96 A;  3R5P A;  5CHO A;  3VY5 A;  3ZOG A;  5JAB A;  1CI0 A;  2ED4 A;  3A6Q A;  2RE7 A;  2IML A;  2OL5 A;  2Q9K A;  1FLM A;  2ASF A;  3VYA A;  4F07 A;  1W3Q A;  1I0R A;  3VY2 A;  2NR4 A; 
#chains in the Genus database with same CATH topology
 3TGV A;  4HMW A;  2FG9 A;  3DMB A;  2QEA A;  4HKH A;  3A20 A;  2I51 A;  1WLI A;  3IN6 A;  3SWJ A;  3FKH A;  3HMZ A;  1XHN A;  1WV4 A;  2IAB A;  3AWH A;  2D36 A;  3RH7 A;  1Y12 A;  2X1K A;  1VL7 A;  1XXO A;  5CHE C;  1RFE A;  1USC A;  2R0X A;  2AQ6 A;  1W9A A;  2E83 A;  2HQ9 A;  2K4Q A;  3U35 A;  3AMF A;  3EC6 A;  1TY9 A;  2L1T A;  3DB0 A;  1WGB A;  4HMX A;  3K87 A;  2I02 A;  2HQ7 A;  4IRA A;  2ECU A;  3R5R A;  1RZ0 A;  2HHZ A;  2VPA A;  3R5Z A;  1EJE A;  3B5M A;  1G78 A;  3A6R A;  3BPK A;  5BNC A;  3V4H A;  4Z85 A;  1I0S A;  1USF A;  1DNL A;  4YBN A;  3R5Y A;  1W3R A;  4HMU A;  2A2J A;  4HMS A;  3K86 A;  2GJG A;  3CP3 A;  3GAS A;  3ZOH A;  2X1J A;  4TV4 A;  4MTK A;  3KYG A;  3NFW A;  1AXJ A;  4HX6 A;  3KYF A;  1G76 A;  3R5W A;  1Y30 A;  3EAA A;  3ZOF A;  3ZOD A;  1G77 A;  3CB0 A;  2FHQ A;  2ECR A;  4QVB A;  4XJ2 A;  4YWN A;  3BNK A;  1W3P A;  3HY8 A;  2QCK A;  3DNH A;  1YOA A;  3E4V A;  2OU5 A;  4R82 A;  1G79 A;  3FGE A;  3K88 A;  4N7R C;  3ZOC A;  1W3O A;  2IG6 A;  4HMT A;  4L82 A;  2HTI A;  1NRG A;  5ESC A;  1T9M A;  1YLN A;  3U34 A;  4Y9I A;  2PTF A;  2ARZ A;  2GUJ A;  2RDE A;  3PFT A;  2D38 A;  1WLK A;  4XHY A;  3F7E A;  3U0I A;  1JNW A;  1RZ1 A;  2D5M A;  3BA3 A;  4ZKY A;  3U5W A;  2FUR A;  2P5Z X;  2HTD A;  3HE1 A;  4HMV A;  3R5L A;  3ZOE A;  2D37 A;  2R6V A;  3H96 A;  3R5P A;  5CHO A;  3VY5 A;  3ZOG A;  4UHV A;  5JAB A;  1CI0 A;  2ED4 A;  3A6Q A;  2RE7 A;  2IML A;  2OL5 A;  2Q9K A;  4W64 A;  1FLM A;  2ASF A;  3VYA A;  4F07 A;  1W3Q A;  1I0R A;  3VY2 A;  2NR4 A; 
#chains in the Genus database with same CATH homology
 3TGV A;  4HMW A;  2FG9 A;  3DMB A;  2QEA A;  3A20 A;  2I51 A;  1WLI A;  3IN6 A;  3SWJ A;  3FKH A;  3HMZ A;  1XHN A;  1WV4 A;  2IAB A;  3AWH A;  2D36 A;  3RH7 A;  2X1K A;  1VL7 A;  1XXO A;  5CHE C;  1RFE A;  1USC A;  2R0X A;  2AQ6 A;  1W9A A;  2E83 A;  2HQ9 A;  3U35 A;  3AMF A;  3EC6 A;  1TY9 A;  3DB0 A;  1WGB A;  4HMX A;  3K87 A;  2I02 A;  2HQ7 A;  4IRA A;  2ECU A;  3R5R A;  1RZ0 A;  2HHZ A;  2VPA A;  3R5Z A;  1EJE A;  3B5M A;  1G78 A;  3A6R A;  3BPK A;  5BNC A;  4Z85 A;  1I0S A;  1USF A;  1DNL A;  4YBN A;  3R5Y A;  1W3R A;  4HMU A;  2A2J A;  4HMS A;  3K86 A;  2GJG A;  3CP3 A;  3GAS A;  3ZOH A;  2X1J A;  3KYG A;  3NFW A;  1AXJ A;  4HX6 A;  3KYF A;  1G76 A;  3R5W A;  1Y30 A;  3ZOF A;  3ZOD A;  1G77 A;  3CB0 A;  2FHQ A;  2ECR A;  4QVB A;  4XJ2 A;  4YWN A;  3BNK A;  1W3P A;  3HY8 A;  2QCK A;  3DNH A;  1YOA A;  3E4V A;  2OU5 A;  4R82 A;  1G79 A;  3FGE A;  3K88 A;  4N7R C;  3ZOC A;  1W3O A;  2IG6 A;  4HMT A;  4L82 A;  2HTI A;  1NRG A;  5ESC A;  1T9M A;  1YLN A;  3U34 A;  4Y9I A;  2PTF A;  2ARZ A;  2RDE A;  3PFT A;  2D38 A;  1WLK A;  4XHY A;  3F7E A;  3U0I A;  1JNW A;  1RZ1 A;  2D5M A;  3BA3 A;  4ZKY A;  3U5W A;  2FUR A;  2HTD A;  4HMV A;  3R5L A;  3ZOE A;  2D37 A;  2R6V A;  3H96 A;  3R5P A;  5CHO A;  3VY5 A;  3ZOG A;  5JAB A;  1CI0 A;  2ED4 A;  3A6Q A;  2RE7 A;  2IML A;  2OL5 A;  2Q9K A;  1FLM A;  2ASF A;  3VYA A;  4F07 A;  1W3Q A;  1I0R A;  3VY2 A;  2NR4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1W3RA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations