1W3RA

Nima from d. radiodurans with metronidazole and pyruvate
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
215
structure length
204
Chain Sequence
SYYHHHHHHLSDFYDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERVFPGLKVGETTRPISEDDLKRTSVYSLSIDRWSGKENWAEQAIQEEDWPALGPEWLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV5 (191-194)TI1 (11-14)AH2 (24-33)TI3 (183-186)TVIII3 (177-180)S1 (36-44)TVIII1 (101-104)3H2 (63-65)TI2 (45-48)S5 (85-99)S4 (67-71)TII2 (144-147)AH3 (125-139)TIV2 (145-148)TIV3 (146-149)AH4 (154-159)S7 (162-175)TIV4 (190-193)TIV1 (17-20)S2 (50-58)S3 (60-62)3H3 (104-106)S6 (108-123)TII1 (140-143)3H1 (3-5)Updating...
connected with : NaN
publication title Structural Basis of 5-Nitroimidazole Antibiotic Resistance: The Crystal Structure of Nima from Deinococcus Radiodurans
pubmed doi rcsb
molecule keywords NIMA-RELATED PROTEIN
molecule tags Antibiotic resistance
source organism Deinococcus radiodurans
total genus 48
structure length 204
sequence length 215
ec nomenclature
pdb deposition date 2004-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1w3rA00
2RE7A 4XHYA 3VYAA 3U0IA 3U35A 1CI0A 4HMSA 5CHEC 1WGBA 4L82A 1T9MA 3VY5A 2NR4A 3U34A 2IABA 3DB0A 3GASA 2IMLA 3RH7A 2VPAA 4R82A 3SWJA 1FLMA 3TGVA 1W3RA 2IG6A 1JNWA 1I0RA 4HX6A 3K88A 1G79A 1VL7A 2AQ6A 2HTDA 4HMTA 4QVBA 3R5PA 1AXJA 3R5RA 3KYFA 2ED4A 4F07A 3R5YA 1RZ0A 3CB0A 3A20A 4HMWA 2D37A 3A6QA 5ESCA 2OL5A 3BPKA 4YBNA 2ECUA 3ZOCA 1WLKA 5CHOA 4Z85A 3ZOHA 4ZKYA 1EJEA 1USFA 2R0XA 3U5WA 1Y30A 2GJGA 3CP3A 3HMZA 4HMXA 5BNCA 2FHQA 2FURA 3R5WA 4Y9IA 2D5MA 3B5MA 2ASFA 2HQ9A 2E83A 2Q9KA 3ZODA 1XXOA 5JABA 2R6VA 2ECRA 2PTFA 3AMFA 3DMBA 1W3OA 2I51A 1YLNA 3AWHA 2HQ7A 2D36A 2X1KA 1G77A 3E4VA 2HHZA 4IRAA 3IN6A 1TY9A 3H96A 4N7RC 1YOAA 3NFWA 2A2JA 1G78A 4XJ2A 1I0SA 3DNHA 3FGEA 4HMUA 4YWNA 1RZ1A 3K87A 3VY2A 3ZOGA 3KYGA 1DNLA 1G76A 1W3PA 1XHNA 2HTIA 3PFTA 1RFEA 2OU5A 1WV4A 2X1JA 3ZOEA 3EC6A 3BA3A 1W3QA 3A6RA 1W9AA 2RDEA 3FKHA 3R5LA 1WLIA 3HY8A 4HMVA 3BNKA 2QEAA 2I02A 2QCKA 3K86A 2FG9A 3F7EA 2D38A 1NRGA 3R5ZA 2ARZA 3ZOFA 1USCA
chains in the Genus database with same CATH superfamily
2RE7A 4XHYA 3VYAA 3U0IA 3U35A 1CI0A 1Y12A 4HMSA 5CHEC 1WGBA 4L82A 1T9MA 3VY5A 2NR4A 3U34A 2IABA 3DB0A 3GASA 2IMLA 3RH7A 2VPAA 4R82A 3SWJA 1FLMA 3TGVA 1W3RA 2IG6A 1JNWA 1I0RA 4HX6A 3K88A 1G79A 1VL7A 2AQ6A 2HTDA 4HMTA 4QVBA 3R5PA 1AXJA 3R5RA 3KYFA 2ED4A 4F07A 3R5YA 1RZ0A 3CB0A 3A20A 4HMWA 2D37A 3A6QA 5ESCA 4HKHA 2OL5A 3BPKA 2K4QA 4YBNA 2ECUA 3ZOCA 1WLKA 5CHOA 4Z85A 3ZOHA 4ZKYA 1EJEA 1USFA 2R0XA 3U5WA 1Y30A 2GJGA 3CP3A 3HMZA 4HMXA 5BNCA 2FHQA 2FURA 3R5WA 4Y9IA 2D5MA 3B5MA 2ASFA 2HQ9A 2E83A 3V4HA 4UHVA 2Q9KA 3ZODA 1XXOA 5JABA 2P5ZX 2R6VA 3EAAA 2ECRA 2PTFA 4TV4A 3AMFA 4W64A 3DMBA 1W3OA 2I51A 1YLNA 3AWHA 2HQ7A 2D36A 2X1KA 1G77A 3E4VA 2HHZA 4IRAA 2GUJA 2L1TA 4MTKA 3IN6A 1TY9A 3H96A 4N7RC 1YOAA 3NFWA 2A2JA 1G78A 4XJ2A 1I0SA 3DNHA 3FGEA 4HMUA 4YWNA 1RZ1A 3K87A 3VY2A 3ZOGA 3KYGA 1DNLA 1G76A 1W3PA 1XHNA 2HTIA 3PFTA 1RFEA 2OU5A 1WV4A 2X1JA 3ZOEA 3EC6A 3BA3A 1W3QA 3A6RA 1W9AA 2RDEA 3FKHA 3HE1A 3R5LA 1WLIA 3HY8A 4HMVA 3BNKA 2QEAA 2I02A 2QCKA 3K86A 2FG9A 3F7EA 2D38A 1NRGA 3R5ZA 2ARZA 3ZOFA 1USCA
chains in the Genus database with same CATH topology
2RE7A 4XHYA 3VYAA 3U0IA 3U35A 1CI0A 4HMSA 5CHEC 1WGBA 4L82A 1T9MA 3VY5A 2NR4A 3U34A 2IABA 3DB0A 3GASA 2IMLA 3RH7A 2VPAA 4R82A 3SWJA 1FLMA 3TGVA 1W3RA 2IG6A 1JNWA 1I0RA 4HX6A 3K88A 1G79A 1VL7A 2AQ6A 2HTDA 4HMTA 4QVBA 3R5PA 1AXJA 3R5RA 3KYFA 2ED4A 4F07A 3R5YA 1RZ0A 3CB0A 3A20A 4HMWA 2D37A 3A6QA 5ESCA 2OL5A 3BPKA 4YBNA 2ECUA 3ZOCA 1WLKA 5CHOA 4Z85A 3ZOHA 4ZKYA 1EJEA 1USFA 2R0XA 3U5WA 1Y30A 2GJGA 3CP3A 3HMZA 4HMXA 5BNCA 2FHQA 2FURA 3R5WA 4Y9IA 2D5MA 3B5MA 2ASFA 2HQ9A 2E83A 2Q9KA 3ZODA 1XXOA 5JABA 2R6VA 2ECRA 2PTFA 3AMFA 3DMBA 1W3OA 2I51A 1YLNA 3AWHA 2HQ7A 2D36A 2X1KA 1G77A 3E4VA 2HHZA 4IRAA 3IN6A 1TY9A 3H96A 4N7RC 1YOAA 3NFWA 2A2JA 1G78A 4XJ2A 1I0SA 3DNHA 3FGEA 4HMUA 4YWNA 1RZ1A 3K87A 3VY2A 3ZOGA 3KYGA 1DNLA 1G76A 1W3PA 1XHNA 2HTIA 3PFTA 1RFEA 2OU5A 1WV4A 2X1JA 3ZOEA 3EC6A 3BA3A 1W3QA 3A6RA 1W9AA 2RDEA 3FKHA 3R5LA 1WLIA 3HY8A 4HMVA 3BNKA 2QEAA 2I02A 2QCKA 3K86A 2FG9A 3F7EA 2D38A 1NRGA 3R5ZA 2ARZA 3ZOFA 1USCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RE7 A;  4XHY A;  3VYA A;  3U0I A;  3U35 A;  1CI0 A;  4HMS A;  5CHE C;  1WGB A;  4L82 A;  1T9M A;  3VY5 A;  2NR4 A;  3U34 A;  2IAB A;  3DB0 A;  3GAS A;  2IML A;  3RH7 A;  2VPA A;  4R82 A;  3SWJ A;  1FLM A;  3TGV A;  1W3R A;  2IG6 A;  1JNW A;  1I0R A;  4HX6 A;  3K88 A;  1G79 A;  1VL7 A;  2AQ6 A;  2HTD A;  4HMT A;  4QVB A;  3R5P A;  1AXJ A;  3R5R A;  3KYF A;  2ED4 A;  4F07 A;  3R5Y A;  1RZ0 A;  3CB0 A;  3A20 A;  4HMW A;  2D37 A;  3A6Q A;  5ESC A;  2OL5 A;  3BPK A;  4YBN A;  2ECU A;  3ZOC A;  1WLK A;  5CHO A;  4Z85 A;  3ZOH A;  4ZKY A;  1EJE A;  1USF A;  2R0X A;  3U5W A;  1Y30 A;  2GJG A;  3CP3 A;  3HMZ A;  4HMX A;  5BNC A;  2FHQ A;  2FUR A;  3R5W A;  4Y9I A;  2D5M A;  3B5M A;  2ASF A;  2HQ9 A;  2E83 A;  2Q9K A;  3ZOD A;  1XXO A;  5JAB A;  2R6V A;  2ECR A;  2PTF A;  3AMF A;  3DMB A;  1W3O A;  2I51 A;  1YLN A;  3AWH A;  2HQ7 A;  2D36 A;  2X1K A;  1G77 A;  3E4V A;  2HHZ A;  4IRA A;  3IN6 A;  1TY9 A;  3H96 A;  4N7R C;  1YOA A;  3NFW A;  2A2J A;  1G78 A;  4XJ2 A;  1I0S A;  3DNH A;  3FGE A;  4HMU A;  4YWN A;  1RZ1 A;  3K87 A;  3VY2 A;  3ZOG A;  3KYG A;  1DNL A;  1G76 A;  1W3P A;  1XHN A;  2HTI A;  3PFT A;  1RFE A;  2OU5 A;  1WV4 A;  2X1J A;  3ZOE A;  3EC6 A;  3BA3 A;  1W3Q A;  3A6R A;  1W9A A;  2RDE A;  3FKH A;  3R5L A;  1WLI A;  3HY8 A;  4HMV A;  3BNK A;  2QEA A;  2I02 A;  2QCK A;  3K86 A;  2FG9 A;  3F7E A;  2D38 A;  1NRG A;  3R5Z A;  2ARZ A;  3ZOF A;  1USC A; 
#chains in the Genus database with same CATH topology
 2RE7 A;  4XHY A;  3VYA A;  3U0I A;  3U35 A;  1CI0 A;  1Y12 A;  4HMS A;  5CHE C;  1WGB A;  4L82 A;  1T9M A;  3VY5 A;  2NR4 A;  3U34 A;  2IAB A;  3DB0 A;  3GAS A;  2IML A;  3RH7 A;  2VPA A;  4R82 A;  3SWJ A;  1FLM A;  3TGV A;  1W3R A;  2IG6 A;  1JNW A;  1I0R A;  4HX6 A;  3K88 A;  1G79 A;  1VL7 A;  2AQ6 A;  2HTD A;  4HMT A;  4QVB A;  3R5P A;  1AXJ A;  3R5R A;  3KYF A;  2ED4 A;  4F07 A;  3R5Y A;  1RZ0 A;  3CB0 A;  3A20 A;  4HMW A;  2D37 A;  3A6Q A;  5ESC A;  4HKH A;  2OL5 A;  3BPK A;  2K4Q A;  4YBN A;  2ECU A;  3ZOC A;  1WLK A;  5CHO A;  4Z85 A;  3ZOH A;  4ZKY A;  1EJE A;  1USF A;  2R0X A;  3U5W A;  1Y30 A;  2GJG A;  3CP3 A;  3HMZ A;  4HMX A;  5BNC A;  2FHQ A;  2FUR A;  3R5W A;  4Y9I A;  2D5M A;  3B5M A;  2ASF A;  2HQ9 A;  2E83 A;  3V4H A;  4UHV A;  2Q9K A;  3ZOD A;  1XXO A;  5JAB A;  2P5Z X;  2R6V A;  3EAA A;  2ECR A;  2PTF A;  4TV4 A;  3AMF A;  4W64 A;  3DMB A;  1W3O A;  2I51 A;  1YLN A;  3AWH A;  2HQ7 A;  2D36 A;  2X1K A;  1G77 A;  3E4V A;  2HHZ A;  4IRA A;  2GUJ A;  2L1T A;  4MTK A;  3IN6 A;  1TY9 A;  3H96 A;  4N7R C;  1YOA A;  3NFW A;  2A2J A;  1G78 A;  4XJ2 A;  1I0S A;  3DNH A;  3FGE A;  4HMU A;  4YWN A;  1RZ1 A;  3K87 A;  3VY2 A;  3ZOG A;  3KYG A;  1DNL A;  1G76 A;  1W3P A;  1XHN A;  2HTI A;  3PFT A;  1RFE A;  2OU5 A;  1WV4 A;  2X1J A;  3ZOE A;  3EC6 A;  3BA3 A;  1W3Q A;  3A6R A;  1W9A A;  2RDE A;  3FKH A;  3HE1 A;  3R5L A;  1WLI A;  3HY8 A;  4HMV A;  3BNK A;  2QEA A;  2I02 A;  2QCK A;  3K86 A;  2FG9 A;  3F7E A;  2D38 A;  1NRG A;  3R5Z A;  2ARZ A;  3ZOF A;  1USC A; 
#chains in the Genus database with same CATH homology
 2RE7 A;  4XHY A;  3VYA A;  3U0I A;  3U35 A;  1CI0 A;  4HMS A;  5CHE C;  1WGB A;  4L82 A;  1T9M A;  3VY5 A;  2NR4 A;  3U34 A;  2IAB A;  3DB0 A;  3GAS A;  2IML A;  3RH7 A;  2VPA A;  4R82 A;  3SWJ A;  1FLM A;  3TGV A;  1W3R A;  2IG6 A;  1JNW A;  1I0R A;  4HX6 A;  3K88 A;  1G79 A;  1VL7 A;  2AQ6 A;  2HTD A;  4HMT A;  4QVB A;  3R5P A;  1AXJ A;  3R5R A;  3KYF A;  2ED4 A;  4F07 A;  3R5Y A;  1RZ0 A;  3CB0 A;  3A20 A;  4HMW A;  2D37 A;  3A6Q A;  5ESC A;  2OL5 A;  3BPK A;  4YBN A;  2ECU A;  3ZOC A;  1WLK A;  5CHO A;  4Z85 A;  3ZOH A;  4ZKY A;  1EJE A;  1USF A;  2R0X A;  3U5W A;  1Y30 A;  2GJG A;  3CP3 A;  3HMZ A;  4HMX A;  5BNC A;  2FHQ A;  2FUR A;  3R5W A;  4Y9I A;  2D5M A;  3B5M A;  2ASF A;  2HQ9 A;  2E83 A;  2Q9K A;  3ZOD A;  1XXO A;  5JAB A;  2R6V A;  2ECR A;  2PTF A;  3AMF A;  3DMB A;  1W3O A;  2I51 A;  1YLN A;  3AWH A;  2HQ7 A;  2D36 A;  2X1K A;  1G77 A;  3E4V A;  2HHZ A;  4IRA A;  3IN6 A;  1TY9 A;  3H96 A;  4N7R C;  1YOA A;  3NFW A;  2A2J A;  1G78 A;  4XJ2 A;  1I0S A;  3DNH A;  3FGE A;  4HMU A;  4YWN A;  1RZ1 A;  3K87 A;  3VY2 A;  3ZOG A;  3KYG A;  1DNL A;  1G76 A;  1W3P A;  1XHN A;  2HTI A;  3PFT A;  1RFE A;  2OU5 A;  1WV4 A;  2X1J A;  3ZOE A;  3EC6 A;  3BA3 A;  1W3Q A;  3A6R A;  1W9A A;  2RDE A;  3FKH A;  3R5L A;  1WLI A;  3HY8 A;  4HMV A;  3BNK A;  2QEA A;  2I02 A;  2QCK A;  3K86 A;  2FG9 A;  3F7E A;  2D38 A;  1NRG A;  3R5Z A;  2ARZ A;  3ZOF A;  1USC A; 
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similar chains in the Genus database (?% sequence similarity)
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