1W3RA

Nima from d. radiodurans with metronidazole and pyruvate
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
215
structure length
204
Chain Sequence
SYYHHHHHHLSDFYDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERVFPGLKVGETTRPISEDDLKRTSVYSLSIDRWSGKENWAEQAIQEEDWPALGPEWLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV5 (191-194)TI1 (11-14)AH2 (24-33)TI3 (183-186)TVIII3 (177-180)S1 (36-44)TVIII1 (101-104)3H2 (63-65)TI2 (45-48)S5 (85-99)S4 (67-71)TII2 (144-147)AH3 (125-139)TIV2 (145-148)TIV3 (146-149)AH4 (154-159)S7 (162-175)TIV4 (190-193)TIV1 (17-20)S2 (50-58)S3 (60-62)3H3 (104-106)S6 (108-123)TII1 (140-143)3H1 (3-5)Updating...
connected with : NaN
publication title Structural Basis of 5-Nitroimidazole Antibiotic Resistance: The Crystal Structure of Nima from Deinococcus Radiodurans
pubmed doi rcsb
molecule keywords NIMA-RELATED PROTEIN
molecule tags Antibiotic resistance
source organism Deinococcus radiodurans
total genus 48
structure length 204
sequence length 215
ec nomenclature
pdb deposition date 2004-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1w3rA00
2HQ7A 3E4VA 3U0IA 1YLNA 3ZOCA 4HX6A 2R6VA 4F07A 4HMUA 4Y9IA 2IMLA 3RH7A 1WLIA 3ZOEA 3B5MA 4HMWA 1CI0A 4HMTA 3K86A 2Q9KA 3VYAA 1USFA 1FLMA 1W9AA 1YOAA 2D37A 3DMBA 1TY9A 3K88A 1RZ1A 2AQ6A 1XHNA 3R5WA 3R5LA 3VY5A 3ZOGA 2QEAA 3CP3A 1WV4A 4XJ2A 4HMXA 2ED4A 5CHEC 2FURA 1G78A 3K87A 3HMZA 2E83A 2HQ9A 2RDEA 2I51A 3FKHA 1EJEA 1W3PA 2IABA 3ZODA 5CHOA 3NFWA 1G79A 2FHQA 2ECRA 2R0XA 2HTDA 2HHZA 1G76A 1NRGA 1USCA 3F7EA 2QCKA 4YWNA 1Y30A 4HMSA 3PFTA 2D36A 4YBNA 1VL7A 4HMVA 2D38A 3R5PA 3A6RA 5BNCA 1W3RA 2X1JA 3SWJA 4IRAA 1W3OA 4R82A 1JNWA 3BNKA 1I0SA 2RE7A 3KYFA 3U34A 3R5RA 2FG9A 3AWHA 5ESCA 2OL5A 3ZOHA 3HY8A 3TGVA 4XHYA 1G77A 3CB0A 3R5ZA 1I0RA 3U35A 2VPAA 2GJGA 2IG6A 1WGBA 4ZKYA 1RZ0A 1XXOA 3A20A 1DNLA 3EC6A 3IN6A 1AXJA 2NR4A 2ECUA 3DNHA 3A6QA 3R5YA 2ASFA 4Z85A 3BPKA 3U5WA 3H96A 3GASA 3AMFA 4N7RC 4L82A 3VY2A 2ARZA 3DB0A 4QVBA 2HTIA 2OU5A 1T9MA 3ZOFA 5JABA 2PTFA 3KYGA 2X1KA 1RFEA 1W3QA 3FGEA 1WLKA 2I02A 2D5MA 2A2JA 3BA3A
chains in the Genus database with same CATH superfamily
2HQ7A 3E4VA 3U0IA 1YLNA 3ZOCA 4HX6A 2R6VA 4UHVA 4F07A 4HMUA 4Y9IA 2IMLA 3RH7A 1WLIA 3ZOEA 3B5MA 4W64A 4HMWA 1CI0A 4HMTA 3K86A 2Q9KA 3VYAA 1USFA 1FLMA 1W9AA 1YOAA 2D37A 3DMBA 1TY9A 4MTKA 3K88A 1RZ1A 2AQ6A 3EAAA 1XHNA 3R5WA 3R5LA 3VY5A 3ZOGA 2QEAA 3CP3A 1WV4A 4XJ2A 4HMXA 2ED4A 5CHEC 2FURA 1G78A 3K87A 3HMZA 2E83A 2HQ9A 2RDEA 2I51A 3FKHA 1EJEA 1W3PA 2IABA 3ZODA 5CHOA 3NFWA 1G79A 2FHQA 2P5ZX 2ECRA 2R0XA 2HTDA 2HHZA 1G76A 1NRGA 1USCA 3F7EA 2QCKA 4YWNA 1Y30A 4HMSA 3PFTA 2D36A 4YBNA 2GUJA 2K4QA 1VL7A 4HMVA 3HE1A 2D38A 3R5PA 3A6RA 5BNCA 1W3RA 4HKHA 2X1JA 2L1TA 3SWJA 4IRAA 1W3OA 4R82A 1JNWA 3BNKA 1I0SA 2RE7A 3KYFA 3U34A 3R5RA 2FG9A 3AWHA 5ESCA 2OL5A 3ZOHA 3HY8A 3TGVA 4XHYA 1G77A 3CB0A 3R5ZA 1I0RA 3U35A 2VPAA 2GJGA 2IG6A 1WGBA 4ZKYA 4TV4A 1RZ0A 1XXOA 3A20A 1DNLA 3EC6A 3IN6A 1AXJA 2NR4A 2ECUA 3V4HA 3DNHA 3A6QA 3R5YA 2ASFA 4Z85A 3BPKA 3U5WA 3H96A 3GASA 3AMFA 4N7RC 4L82A 3VY2A 2ARZA 3DB0A 4QVBA 2HTIA 1Y12A 1T9MA 2OU5A 3ZOFA 5JABA 2PTFA 3KYGA 2X1KA 1RFEA 1W3QA 3FGEA 1WLKA 2I02A 2D5MA 2A2JA 3BA3A
chains in the Genus database with same CATH topology
2HQ7A 3E4VA 3U0IA 1YLNA 3ZOCA 4HX6A 2R6VA 4F07A 4HMUA 4Y9IA 2IMLA 3RH7A 1WLIA 3ZOEA 3B5MA 4HMWA 1CI0A 4HMTA 3K86A 2Q9KA 3VYAA 1USFA 1FLMA 1W9AA 1YOAA 2D37A 3DMBA 1TY9A 3K88A 1RZ1A 2AQ6A 1XHNA 3R5WA 3R5LA 3VY5A 3ZOGA 2QEAA 3CP3A 1WV4A 4XJ2A 4HMXA 2ED4A 5CHEC 2FURA 1G78A 3K87A 3HMZA 2E83A 2HQ9A 2RDEA 2I51A 3FKHA 1EJEA 1W3PA 2IABA 3ZODA 5CHOA 3NFWA 1G79A 2FHQA 2ECRA 2R0XA 2HTDA 2HHZA 1G76A 1NRGA 1USCA 3F7EA 2QCKA 4YWNA 1Y30A 4HMSA 3PFTA 2D36A 4YBNA 1VL7A 4HMVA 2D38A 3R5PA 3A6RA 5BNCA 1W3RA 2X1JA 3SWJA 4IRAA 1W3OA 4R82A 1JNWA 3BNKA 1I0SA 2RE7A 3KYFA 3U34A 3R5RA 2FG9A 3AWHA 5ESCA 2OL5A 3ZOHA 3HY8A 3TGVA 4XHYA 1G77A 3CB0A 3R5ZA 1I0RA 3U35A 2VPAA 2GJGA 2IG6A 1WGBA 4ZKYA 1RZ0A 1XXOA 3A20A 1DNLA 3EC6A 3IN6A 1AXJA 2NR4A 2ECUA 3DNHA 3A6QA 3R5YA 2ASFA 4Z85A 3BPKA 3U5WA 3H96A 3GASA 3AMFA 4N7RC 4L82A 3VY2A 2ARZA 3DB0A 4QVBA 2HTIA 2OU5A 1T9MA 3ZOFA 5JABA 2PTFA 3KYGA 2X1KA 1RFEA 1W3QA 3FGEA 1WLKA 2I02A 2D5MA 2A2JA 3BA3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HQ7 A;  3E4V A;  3U0I A;  1YLN A;  3ZOC A;  4HX6 A;  2R6V A;  4F07 A;  4HMU A;  4Y9I A;  2IML A;  3RH7 A;  1WLI A;  3ZOE A;  3B5M A;  4HMW A;  1CI0 A;  4HMT A;  3K86 A;  2Q9K A;  3VYA A;  1USF A;  1FLM A;  1W9A A;  1YOA A;  2D37 A;  3DMB A;  1TY9 A;  3K88 A;  1RZ1 A;  2AQ6 A;  1XHN A;  3R5W A;  3R5L A;  3VY5 A;  3ZOG A;  2QEA A;  3CP3 A;  1WV4 A;  4XJ2 A;  4HMX A;  2ED4 A;  5CHE C;  2FUR A;  1G78 A;  3K87 A;  3HMZ A;  2E83 A;  2HQ9 A;  2RDE A;  2I51 A;  3FKH A;  1EJE A;  1W3P A;  2IAB A;  3ZOD A;  5CHO A;  3NFW A;  1G79 A;  2FHQ A;  2ECR A;  2R0X A;  2HTD A;  2HHZ A;  1G76 A;  1NRG A;  1USC A;  3F7E A;  2QCK A;  4YWN A;  1Y30 A;  4HMS A;  3PFT A;  2D36 A;  4YBN A;  1VL7 A;  4HMV A;  2D38 A;  3R5P A;  3A6R A;  5BNC A;  1W3R A;  2X1J A;  3SWJ A;  4IRA A;  1W3O A;  4R82 A;  1JNW A;  3BNK A;  1I0S A;  2RE7 A;  3KYF A;  3U34 A;  3R5R A;  2FG9 A;  3AWH A;  5ESC A;  2OL5 A;  3ZOH A;  3HY8 A;  3TGV A;  4XHY A;  1G77 A;  3CB0 A;  3R5Z A;  1I0R A;  3U35 A;  2VPA A;  2GJG A;  2IG6 A;  1WGB A;  4ZKY A;  1RZ0 A;  1XXO A;  3A20 A;  1DNL A;  3EC6 A;  3IN6 A;  1AXJ A;  2NR4 A;  2ECU A;  3DNH A;  3A6Q A;  3R5Y A;  2ASF A;  4Z85 A;  3BPK A;  3U5W A;  3H96 A;  3GAS A;  3AMF A;  4N7R C;  4L82 A;  3VY2 A;  2ARZ A;  3DB0 A;  4QVB A;  2HTI A;  2OU5 A;  1T9M A;  3ZOF A;  5JAB A;  2PTF A;  3KYG A;  2X1K A;  1RFE A;  1W3Q A;  3FGE A;  1WLK A;  2I02 A;  2D5M A;  2A2J A;  3BA3 A; 
#chains in the Genus database with same CATH topology
 2HQ7 A;  3E4V A;  3U0I A;  1YLN A;  3ZOC A;  4HX6 A;  2R6V A;  4UHV A;  4F07 A;  4HMU A;  4Y9I A;  2IML A;  3RH7 A;  1WLI A;  3ZOE A;  3B5M A;  4W64 A;  4HMW A;  1CI0 A;  4HMT A;  3K86 A;  2Q9K A;  3VYA A;  1USF A;  1FLM A;  1W9A A;  1YOA A;  2D37 A;  3DMB A;  1TY9 A;  4MTK A;  3K88 A;  1RZ1 A;  2AQ6 A;  3EAA A;  1XHN A;  3R5W A;  3R5L A;  3VY5 A;  3ZOG A;  2QEA A;  3CP3 A;  1WV4 A;  4XJ2 A;  4HMX A;  2ED4 A;  5CHE C;  2FUR A;  1G78 A;  3K87 A;  3HMZ A;  2E83 A;  2HQ9 A;  2RDE A;  2I51 A;  3FKH A;  1EJE A;  1W3P A;  2IAB A;  3ZOD A;  5CHO A;  3NFW A;  1G79 A;  2FHQ A;  2P5Z X;  2ECR A;  2R0X A;  2HTD A;  2HHZ A;  1G76 A;  1NRG A;  1USC A;  3F7E A;  2QCK A;  4YWN A;  1Y30 A;  4HMS A;  3PFT A;  2D36 A;  4YBN A;  2GUJ A;  2K4Q A;  1VL7 A;  4HMV A;  3HE1 A;  2D38 A;  3R5P A;  3A6R A;  5BNC A;  1W3R A;  4HKH A;  2X1J A;  2L1T A;  3SWJ A;  4IRA A;  1W3O A;  4R82 A;  1JNW A;  3BNK A;  1I0S A;  2RE7 A;  3KYF A;  3U34 A;  3R5R A;  2FG9 A;  3AWH A;  5ESC A;  2OL5 A;  3ZOH A;  3HY8 A;  3TGV A;  4XHY A;  1G77 A;  3CB0 A;  3R5Z A;  1I0R A;  3U35 A;  2VPA A;  2GJG A;  2IG6 A;  1WGB A;  4ZKY A;  4TV4 A;  1RZ0 A;  1XXO A;  3A20 A;  1DNL A;  3EC6 A;  3IN6 A;  1AXJ A;  2NR4 A;  2ECU A;  3V4H A;  3DNH A;  3A6Q A;  3R5Y A;  2ASF A;  4Z85 A;  3BPK A;  3U5W A;  3H96 A;  3GAS A;  3AMF A;  4N7R C;  4L82 A;  3VY2 A;  2ARZ A;  3DB0 A;  4QVB A;  2HTI A;  1Y12 A;  1T9M A;  2OU5 A;  3ZOF A;  5JAB A;  2PTF A;  3KYG A;  2X1K A;  1RFE A;  1W3Q A;  3FGE A;  1WLK A;  2I02 A;  2D5M A;  2A2J A;  3BA3 A; 
#chains in the Genus database with same CATH homology
 2HQ7 A;  3E4V A;  3U0I A;  1YLN A;  3ZOC A;  4HX6 A;  2R6V A;  4F07 A;  4HMU A;  4Y9I A;  2IML A;  3RH7 A;  1WLI A;  3ZOE A;  3B5M A;  4HMW A;  1CI0 A;  4HMT A;  3K86 A;  2Q9K A;  3VYA A;  1USF A;  1FLM A;  1W9A A;  1YOA A;  2D37 A;  3DMB A;  1TY9 A;  3K88 A;  1RZ1 A;  2AQ6 A;  1XHN A;  3R5W A;  3R5L A;  3VY5 A;  3ZOG A;  2QEA A;  3CP3 A;  1WV4 A;  4XJ2 A;  4HMX A;  2ED4 A;  5CHE C;  2FUR A;  1G78 A;  3K87 A;  3HMZ A;  2E83 A;  2HQ9 A;  2RDE A;  2I51 A;  3FKH A;  1EJE A;  1W3P A;  2IAB A;  3ZOD A;  5CHO A;  3NFW A;  1G79 A;  2FHQ A;  2ECR A;  2R0X A;  2HTD A;  2HHZ A;  1G76 A;  1NRG A;  1USC A;  3F7E A;  2QCK A;  4YWN A;  1Y30 A;  4HMS A;  3PFT A;  2D36 A;  4YBN A;  1VL7 A;  4HMV A;  2D38 A;  3R5P A;  3A6R A;  5BNC A;  1W3R A;  2X1J A;  3SWJ A;  4IRA A;  1W3O A;  4R82 A;  1JNW A;  3BNK A;  1I0S A;  2RE7 A;  3KYF A;  3U34 A;  3R5R A;  2FG9 A;  3AWH A;  5ESC A;  2OL5 A;  3ZOH A;  3HY8 A;  3TGV A;  4XHY A;  1G77 A;  3CB0 A;  3R5Z A;  1I0R A;  3U35 A;  2VPA A;  2GJG A;  2IG6 A;  1WGB A;  4ZKY A;  1RZ0 A;  1XXO A;  3A20 A;  1DNL A;  3EC6 A;  3IN6 A;  1AXJ A;  2NR4 A;  2ECU A;  3DNH A;  3A6Q A;  3R5Y A;  2ASF A;  4Z85 A;  3BPK A;  3U5W A;  3H96 A;  3GAS A;  3AMF A;  4N7R C;  4L82 A;  3VY2 A;  2ARZ A;  3DB0 A;  4QVB A;  2HTI A;  2OU5 A;  1T9M A;  3ZOF A;  5JAB A;  2PTF A;  3KYG A;  2X1K A;  1RFE A;  1W3Q A;  3FGE A;  1WLK A;  2I02 A;  2D5M A;  2A2J A;  3BA3 A; 
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similar chains in the Genus database (?% sequence similarity)
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