1W3RA

Nima from d. radiodurans with metronidazole and pyruvate
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
215
structure length
204
Chain Sequence
SYYHHHHHHLSDFYDPRERDPSVSRRPQNRQSDEWIRELLLRGTIARVATLWQGEDGAAFPFITPLAYAYRPEQGDLVYHTNVVGRLRANAGQGHPATLEVSEIGQFLPSNSPLELSVQYRSVMVFGTARVLAGEDARAALTTLSERVFPGLKVGETTRPISEDDLKRTSVYSLSIDRWSGKENWAEQAIQEEDWPALGPEWLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV5 (191-194)TI1 (11-14)AH2 (24-33)TI3 (183-186)TVIII3 (177-180)S1 (36-44)TVIII1 (101-104)3H2 (63-65)TI2 (45-48)S5 (85-99)S4 (67-71)TII2 (144-147)AH3 (125-139)TIV2 (145-148)TIV3 (146-149)AH4 (154-159)S7 (162-175)TIV4 (190-193)TIV1 (17-20)S2 (50-58)S3 (60-62)3H3 (104-106)S6 (108-123)TII1 (140-143)3H1 (3-5)Updating...
connected with : NaN
publication title Structural Basis of 5-Nitroimidazole Antibiotic Resistance: The Crystal Structure of Nima from Deinococcus Radiodurans
pubmed doi rcsb
molecule keywords NIMA-RELATED PROTEIN
molecule tags Antibiotic resistance
source organism Deinococcus radiodurans
total genus 48
structure length 204
sequence length 215
ec nomenclature
pdb deposition date 2004-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12900 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1w3rA00
4IRAA 4YBNA 3NFWA 1W3PA 3U35A 2IABA 3A6QA 2VPAA 3VYAA 2NR4A 3FGEA 1Y30A 4HMXA 3CP3A 4HMUA 3ZOEA 1USCA 4YWNA 3FKHA 1I0RA 1CI0A 1G76A 1W3QA 2FG9A 2HHZA 3U34A 3U5WA 4XHYA 3VY5A 3R5WA 2HQ7A 1YLNA 3BA3A 2ASFA 3AMFA 3AWHA 3K88A 2IMLA 1WLIA 5CHOA 3R5PA 3B5MA 3VY2A 2IG6A 1AXJA 1WLKA 4QVBA 4Y9IA 3IN6A 3E4VA 3F7EA 4HMWA 3R5ZA 1W9AA 3ZOGA 1FLMA 2FHQA 2GJGA 4Z85A 1WV4A 1EJEA 1VL7A 3PFTA 1JNWA 2A2JA 5JABA 1XXOA 1I0SA 2D5MA 1RFEA 2ARZA 5ESCA 2HQ9A 2FURA 2RE7A 2X1KA 3DMBA 1YOAA 2ECRA 3EC6A 4HMVA 3BPKA 3A20A 3ZOHA 2R6VA 2X1JA 3A6RA 1RZ1A 3GASA 4HMSA 3BNKA 3K86A 2R0XA 1NRGA 1TY9A 2D37A 1G77A 3TGVA 3U0IA 3R5LA 3HY8A 4HMTA 1T9MA 5CHEC 2RDEA 2PTFA 2D36A 3ZOCA 1W3RA 3RH7A 3HMZA 2I51A 2QCKA 3ZOFA 4ZKYA 5BNCA 3K87A 1RZ0A 2HTDA 1WGBA 2ECUA 2ED4A 4HX6A 2AQ6A 3DB0A 3R5RA 1USFA 2OU5A 2D38A 3R5YA 4N7RC 2E83A 1DNLA 3ZODA 1G78A 4R82A 3CB0A 3SWJA 3KYGA 2I02A 1W3OA 3KYFA 3H96A 4XJ2A 2HTIA 3DNHA 4F07A 4L82A 1G79A 2QEAA 1XHNA 2Q9KA 2OL5A
chains in the Genus database with same CATH superfamily
4W64A 4IRAA 4YBNA 3NFWA 1W3PA 3U35A 2IABA 3A6QA 4MTKA 4HKHA 2VPAA 3VYAA 2P5ZX 2NR4A 3FGEA 1Y30A 4HMXA 3CP3A 4HMUA 3ZOEA 1USCA 4YWNA 3FKHA 1I0RA 1CI0A 1G76A 1W3QA 4UHVA 2FG9A 2HHZA 3U34A 3U5WA 1Y12A 4XHYA 3VY5A 3R5WA 2HQ7A 2K4QA 1YLNA 3BA3A 2ASFA 3AMFA 3AWHA 3K88A 2IMLA 1WLIA 2GUJA 5CHOA 3R5PA 3B5MA 3VY2A 2IG6A 1AXJA 1WLKA 4QVBA 4Y9IA 3IN6A 3E4VA 3F7EA 4HMWA 3R5ZA 1W9AA 3ZOGA 1FLMA 2FHQA 2GJGA 4Z85A 1WV4A 3EAAA 1EJEA 1VL7A 3PFTA 1JNWA 2A2JA 5JABA 1XXOA 1I0SA 2D5MA 1RFEA 2ARZA 5ESCA 2HQ9A 2FURA 4TV4A 2RE7A 2X1KA 3DMBA 1YOAA 2ECRA 3EC6A 4HMVA 3BPKA 3A20A 3ZOHA 2R6VA 2X1JA 3A6RA 1RZ1A 3GASA 4HMSA 3BNKA 3K86A 2R0XA 1NRGA 1TY9A 2D37A 3HE1A 1G77A 3TGVA 3U0IA 3R5LA 3HY8A 4HMTA 1T9MA 5CHEC 2RDEA 2PTFA 2D36A 3ZOCA 1W3RA 3RH7A 3HMZA 2I51A 2QCKA 3ZOFA 4ZKYA 5BNCA 2L1TA 3K87A 1RZ0A 2HTDA 1WGBA 2ECUA 2ED4A 4HX6A 2AQ6A 3DB0A 3R5RA 1USFA 2OU5A 2D38A 3R5YA 4N7RC 2E83A 1DNLA 3ZODA 1G78A 4R82A 3CB0A 3SWJA 3KYGA 2I02A 1W3OA 3KYFA 3V4HA 3H96A 4XJ2A 2HTIA 3DNHA 4F07A 4L82A 1G79A 2QEAA 1XHNA 2Q9KA 2OL5A
chains in the Genus database with same CATH topology
4IRAA 4YBNA 3NFWA 1W3PA 3U35A 2IABA 3A6QA 2VPAA 3VYAA 2NR4A 3FGEA 1Y30A 4HMXA 3CP3A 4HMUA 3ZOEA 1USCA 4YWNA 3FKHA 1I0RA 1CI0A 1G76A 1W3QA 2FG9A 2HHZA 3U34A 3U5WA 4XHYA 3VY5A 3R5WA 2HQ7A 1YLNA 3BA3A 2ASFA 3AMFA 3AWHA 3K88A 2IMLA 1WLIA 5CHOA 3R5PA 3B5MA 3VY2A 2IG6A 1AXJA 1WLKA 4QVBA 4Y9IA 3IN6A 3E4VA 3F7EA 4HMWA 3R5ZA 1W9AA 3ZOGA 1FLMA 2FHQA 2GJGA 4Z85A 1WV4A 1EJEA 1VL7A 3PFTA 1JNWA 2A2JA 5JABA 1XXOA 1I0SA 2D5MA 1RFEA 2ARZA 5ESCA 2HQ9A 2FURA 2RE7A 2X1KA 3DMBA 1YOAA 2ECRA 3EC6A 4HMVA 3BPKA 3A20A 3ZOHA 2R6VA 2X1JA 3A6RA 1RZ1A 3GASA 4HMSA 3BNKA 3K86A 2R0XA 1NRGA 1TY9A 2D37A 1G77A 3TGVA 3U0IA 3R5LA 3HY8A 4HMTA 1T9MA 5CHEC 2RDEA 2PTFA 2D36A 3ZOCA 1W3RA 3RH7A 3HMZA 2I51A 2QCKA 3ZOFA 4ZKYA 5BNCA 3K87A 1RZ0A 2HTDA 1WGBA 2ECUA 2ED4A 4HX6A 2AQ6A 3DB0A 3R5RA 1USFA 2OU5A 2D38A 3R5YA 4N7RC 2E83A 1DNLA 3ZODA 1G78A 4R82A 3CB0A 3SWJA 3KYGA 2I02A 1W3OA 3KYFA 3H96A 4XJ2A 2HTIA 3DNHA 4F07A 4L82A 1G79A 2QEAA 1XHNA 2Q9KA 2OL5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IRA A;  4YBN A;  3NFW A;  1W3P A;  3U35 A;  2IAB A;  3A6Q A;  2VPA A;  3VYA A;  2NR4 A;  3FGE A;  1Y30 A;  4HMX A;  3CP3 A;  4HMU A;  3ZOE A;  1USC A;  4YWN A;  3FKH A;  1I0R A;  1CI0 A;  1G76 A;  1W3Q A;  2FG9 A;  2HHZ A;  3U34 A;  3U5W A;  4XHY A;  3VY5 A;  3R5W A;  2HQ7 A;  1YLN A;  3BA3 A;  2ASF A;  3AMF A;  3AWH A;  3K88 A;  2IML A;  1WLI A;  5CHO A;  3R5P A;  3B5M A;  3VY2 A;  2IG6 A;  1AXJ A;  1WLK A;  4QVB A;  4Y9I A;  3IN6 A;  3E4V A;  3F7E A;  4HMW A;  3R5Z A;  1W9A A;  3ZOG A;  1FLM A;  2FHQ A;  2GJG A;  4Z85 A;  1WV4 A;  1EJE A;  1VL7 A;  3PFT A;  1JNW A;  2A2J A;  5JAB A;  1XXO A;  1I0S A;  2D5M A;  1RFE A;  2ARZ A;  5ESC A;  2HQ9 A;  2FUR A;  2RE7 A;  2X1K A;  3DMB A;  1YOA A;  2ECR A;  3EC6 A;  4HMV A;  3BPK A;  3A20 A;  3ZOH A;  2R6V A;  2X1J A;  3A6R A;  1RZ1 A;  3GAS A;  4HMS A;  3BNK A;  3K86 A;  2R0X A;  1NRG A;  1TY9 A;  2D37 A;  1G77 A;  3TGV A;  3U0I A;  3R5L A;  3HY8 A;  4HMT A;  1T9M A;  5CHE C;  2RDE A;  2PTF A;  2D36 A;  3ZOC A;  1W3R A;  3RH7 A;  3HMZ A;  2I51 A;  2QCK A;  3ZOF A;  4ZKY A;  5BNC A;  3K87 A;  1RZ0 A;  2HTD A;  1WGB A;  2ECU A;  2ED4 A;  4HX6 A;  2AQ6 A;  3DB0 A;  3R5R A;  1USF A;  2OU5 A;  2D38 A;  3R5Y A;  4N7R C;  2E83 A;  1DNL A;  3ZOD A;  1G78 A;  4R82 A;  3CB0 A;  3SWJ A;  3KYG A;  2I02 A;  1W3O A;  3KYF A;  3H96 A;  4XJ2 A;  2HTI A;  3DNH A;  4F07 A;  4L82 A;  1G79 A;  2QEA A;  1XHN A;  2Q9K A;  2OL5 A; 
#chains in the Genus database with same CATH topology
 4W64 A;  4IRA A;  4YBN A;  3NFW A;  1W3P A;  3U35 A;  2IAB A;  3A6Q A;  4MTK A;  4HKH A;  2VPA A;  3VYA A;  2P5Z X;  2NR4 A;  3FGE A;  1Y30 A;  4HMX A;  3CP3 A;  4HMU A;  3ZOE A;  1USC A;  4YWN A;  3FKH A;  1I0R A;  1CI0 A;  1G76 A;  1W3Q A;  4UHV A;  2FG9 A;  2HHZ A;  3U34 A;  3U5W A;  1Y12 A;  4XHY A;  3VY5 A;  3R5W A;  2HQ7 A;  2K4Q A;  1YLN A;  3BA3 A;  2ASF A;  3AMF A;  3AWH A;  3K88 A;  2IML A;  1WLI A;  2GUJ A;  5CHO A;  3R5P A;  3B5M A;  3VY2 A;  2IG6 A;  1AXJ A;  1WLK A;  4QVB A;  4Y9I A;  3IN6 A;  3E4V A;  3F7E A;  4HMW A;  3R5Z A;  1W9A A;  3ZOG A;  1FLM A;  2FHQ A;  2GJG A;  4Z85 A;  1WV4 A;  3EAA A;  1EJE A;  1VL7 A;  3PFT A;  1JNW A;  2A2J A;  5JAB A;  1XXO A;  1I0S A;  2D5M A;  1RFE A;  2ARZ A;  5ESC A;  2HQ9 A;  2FUR A;  4TV4 A;  2RE7 A;  2X1K A;  3DMB A;  1YOA A;  2ECR A;  3EC6 A;  4HMV A;  3BPK A;  3A20 A;  3ZOH A;  2R6V A;  2X1J A;  3A6R A;  1RZ1 A;  3GAS A;  4HMS A;  3BNK A;  3K86 A;  2R0X A;  1NRG A;  1TY9 A;  2D37 A;  3HE1 A;  1G77 A;  3TGV A;  3U0I A;  3R5L A;  3HY8 A;  4HMT A;  1T9M A;  5CHE C;  2RDE A;  2PTF A;  2D36 A;  3ZOC A;  1W3R A;  3RH7 A;  3HMZ A;  2I51 A;  2QCK A;  3ZOF A;  4ZKY A;  5BNC A;  2L1T A;  3K87 A;  1RZ0 A;  2HTD A;  1WGB A;  2ECU A;  2ED4 A;  4HX6 A;  2AQ6 A;  3DB0 A;  3R5R A;  1USF A;  2OU5 A;  2D38 A;  3R5Y A;  4N7R C;  2E83 A;  1DNL A;  3ZOD A;  1G78 A;  4R82 A;  3CB0 A;  3SWJ A;  3KYG A;  2I02 A;  1W3O A;  3KYF A;  3V4H A;  3H96 A;  4XJ2 A;  2HTI A;  3DNH A;  4F07 A;  4L82 A;  1G79 A;  2QEA A;  1XHN A;  2Q9K A;  2OL5 A; 
#chains in the Genus database with same CATH homology
 4IRA A;  4YBN A;  3NFW A;  1W3P A;  3U35 A;  2IAB A;  3A6Q A;  2VPA A;  3VYA A;  2NR4 A;  3FGE A;  1Y30 A;  4HMX A;  3CP3 A;  4HMU A;  3ZOE A;  1USC A;  4YWN A;  3FKH A;  1I0R A;  1CI0 A;  1G76 A;  1W3Q A;  2FG9 A;  2HHZ A;  3U34 A;  3U5W A;  4XHY A;  3VY5 A;  3R5W A;  2HQ7 A;  1YLN A;  3BA3 A;  2ASF A;  3AMF A;  3AWH A;  3K88 A;  2IML A;  1WLI A;  5CHO A;  3R5P A;  3B5M A;  3VY2 A;  2IG6 A;  1AXJ A;  1WLK A;  4QVB A;  4Y9I A;  3IN6 A;  3E4V A;  3F7E A;  4HMW A;  3R5Z A;  1W9A A;  3ZOG A;  1FLM A;  2FHQ A;  2GJG A;  4Z85 A;  1WV4 A;  1EJE A;  1VL7 A;  3PFT A;  1JNW A;  2A2J A;  5JAB A;  1XXO A;  1I0S A;  2D5M A;  1RFE A;  2ARZ A;  5ESC A;  2HQ9 A;  2FUR A;  2RE7 A;  2X1K A;  3DMB A;  1YOA A;  2ECR A;  3EC6 A;  4HMV A;  3BPK A;  3A20 A;  3ZOH A;  2R6V A;  2X1J A;  3A6R A;  1RZ1 A;  3GAS A;  4HMS A;  3BNK A;  3K86 A;  2R0X A;  1NRG A;  1TY9 A;  2D37 A;  1G77 A;  3TGV A;  3U0I A;  3R5L A;  3HY8 A;  4HMT A;  1T9M A;  5CHE C;  2RDE A;  2PTF A;  2D36 A;  3ZOC A;  1W3R A;  3RH7 A;  3HMZ A;  2I51 A;  2QCK A;  3ZOF A;  4ZKY A;  5BNC A;  3K87 A;  1RZ0 A;  2HTD A;  1WGB A;  2ECU A;  2ED4 A;  4HX6 A;  2AQ6 A;  3DB0 A;  3R5R A;  1USF A;  2OU5 A;  2D38 A;  3R5Y A;  4N7R C;  2E83 A;  1DNL A;  3ZOD A;  1G78 A;  4R82 A;  3CB0 A;  3SWJ A;  3KYG A;  2I02 A;  1W3O A;  3KYF A;  3H96 A;  4XJ2 A;  2HTI A;  3DNH A;  4F07 A;  4L82 A;  1G79 A;  2QEA A;  1XHN A;  2Q9K A;  2OL5 A; 
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