1WGBA

Crystal structure of a probable flavoprotein from thermus thermophilus hb8
Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
159
structure length
159
Chain Sequence
MNLEAKKKVLRSFTYGLYVLTAKDGDEVAAGTVNWVTQASFQPPLVAVGLKRDSHLHALVERTGKLALMTLAHDQKAIAQDFFKPTVREGDRLNGHPFEPSPTFGLPLLTELPYWLEAEVRHLYPGGDHSLVVAEVVEAGVRREEKPLVMWDTGWFYGG
2040608010012014014012010080604020
051015202530Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (18-24)S5 (65-70)TI2 (102-105)TII'1 (24-27)TVIII2 (51-54)O1 (34-36)S2 (27-33)S4 (45-51)TI4 (151-154)S3 (36-40)TVIII1 (40-43)S11 (129-141)TII'3 (126-129)AH2 (55-63)EMPTYS10 (114-126)TI1 (72-75)S9 (107-109)AH3 (75-82)S7 (92-93)TII'2 (89-92)S6 (88-89)S8 (96-100)TIV2 (92-95)TIV3 (101-104)TI3 (109-112)TIV1 (41-44)AH1 (3-11)Updating...
connected with : NaN
publication title Crystal structure of a probable flavoprotein from Thermus thermophilus HB8
rcsb
molecule keywords probable flavoprotein
molecule tags Oxidoreductase
source organism Thermus thermophilus
total genus 34
structure length 159
sequence length 159
ec nomenclature
pdb deposition date 2004-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1wgbA00
2FG9A 2AQ6A 2IMLA 3HY8A 5CHEC 4YBNA 4N7RC 1FLMA 3ZOFA 4QVBA 3FKHA 3CB0A 2ECUA 3H96A 4YWNA 2R0XA 1NRGA 3K86A 2HHZA 2D37A 3BPKA 3ZOEA 1WV4A 5ESCA 1G79A 1TY9A 2X1JA 3R5WA 3SWJA 3VYAA 1JNWA 1I0SA 2OL5A 3AWHA 2D36A 5JABA 3PFTA 1XHNA 1DNLA 1W3QA 3B5MA 3U34A 1YOAA 2HTIA 1WGBA 3A6RA 4HMTA 2D38A 2NR4A 3R5PA 3VY2A 3R5ZA 4XJ2A 3A20A 4HMVA 3VY5A 3FGEA 3RH7A 2ECRA 2QCKA 3U35A 2FURA 2HQ7A 5CHOA 3K88A 1USFA 1RFEA 1T9MA 4HMSA 3R5YA 2ARZA 3BA3A 2X1KA 3R5LA 1W3RA 1W3PA 2ASFA 3EC6A 4R82A 2VPAA 3DB0A 2IABA 3HMZA 4XHYA 3ZOHA 3KYGA 2R6VA 4HMWA 3F7EA 1XXOA 1AXJA 2HQ9A 3DNHA 1WLKA 2IG6A 3ZOCA 3ZODA 2Q9KA 2HTDA 4IRAA 1W3OA 2A2JA 1RZ0A 1VL7A 3R5RA 4HMUA 1RZ1A 1I0RA 3KYFA 1EJEA 3A6QA 2ED4A 2PTFA 1Y30A 4L82A 4ZKYA 2OU5A 1W9AA 4F07A 3NFWA 3BNKA 3K87A 4HMXA 3DMBA 3E4VA 3TGVA 2RE7A 2RDEA 4HX6A 1G78A 3U0IA 2E83A 3GASA 4Y9IA 1G76A 1YLNA 2I02A 1WLIA 3AMFA 1G77A 1USCA 2FHQA 4Z85A 5BNCA 3U5WA 1CI0A 3ZOGA 2I51A 3CP3A 2D5MA 2GJGA 3IN6A 2QEAA
chains in the Genus database with same CATH superfamily
2FG9A 2AQ6A 2IMLA 3HY8A 5CHEC 4YBNA 4N7RC 1FLMA 3EAAA 3ZOFA 4QVBA 3FKHA 3CB0A 2ECUA 3H96A 4YWNA 2R0XA 1NRGA 3K86A 2HHZA 2D37A 3BPKA 3ZOEA 1WV4A 5ESCA 1G79A 1TY9A 4MTKA 2X1JA 3R5WA 3SWJA 3VYAA 1JNWA 1I0SA 2OL5A 3AWHA 2D36A 5JABA 3PFTA 1XHNA 1DNLA 1W3QA 3B5MA 3U34A 1YOAA 2HTIA 1WGBA 3A6RA 4HMTA 2D38A 2NR4A 3R5PA 3HE1A 3VY2A 3R5ZA 4XJ2A 3A20A 4HMVA 3VY5A 3FGEA 3RH7A 2ECRA 2QCKA 3U35A 2FURA 2HQ7A 2L1TA 5CHOA 3K88A 1USFA 1RFEA 1T9MA 4HMSA 3R5YA 2ARZA 3BA3A 2X1KA 2GUJA 3R5LA 1W3RA 1W3PA 2ASFA 3EC6A 4R82A 2VPAA 3DB0A 2P5ZX 2IABA 3HMZA 4XHYA 3ZOHA 3KYGA 2R6VA 4HMWA 3F7EA 1XXOA 1AXJA 4W64A 2HQ9A 3DNHA 1WLKA 2IG6A 3ZOCA 3ZODA 2Q9KA 2HTDA 4IRAA 1W3OA 2A2JA 1RZ0A 1VL7A 3R5RA 4HMUA 3V4HA 1RZ1A 1I0RA 3KYFA 1EJEA 3A6QA 2ED4A 2PTFA 1Y30A 4L82A 4ZKYA 2OU5A 1W9AA 4F07A 3NFWA 3BNKA 3K87A 4HMXA 3DMBA 3E4VA 3TGVA 2RE7A 4HKHA 2RDEA 4HX6A 1G78A 3U0IA 2E83A 3GASA 4Y9IA 1G76A 1YLNA 1Y12A 2I02A 1WLIA 3AMFA 1G77A 1USCA 2FHQA 4UHVA 4Z85A 5BNCA 3U5WA 1CI0A 4TV4A 2I51A 2K4QA 3CP3A 3ZOGA 2D5MA 2GJGA 3IN6A 2QEAA
chains in the Genus database with same CATH topology
2FG9A 2AQ6A 2IMLA 3HY8A 5CHEC 4YBNA 4N7RC 1FLMA 3ZOFA 4QVBA 3FKHA 3CB0A 2ECUA 3H96A 4YWNA 2R0XA 1NRGA 3K86A 2HHZA 2D37A 3BPKA 3ZOEA 1WV4A 5ESCA 1G79A 1TY9A 2X1JA 3R5WA 3SWJA 3VYAA 1JNWA 1I0SA 2OL5A 3AWHA 2D36A 5JABA 3PFTA 1XHNA 1DNLA 1W3QA 3B5MA 3U34A 1YOAA 2HTIA 1WGBA 3A6RA 4HMTA 2D38A 2NR4A 3R5PA 3VY2A 3R5ZA 4XJ2A 3A20A 4HMVA 3VY5A 3FGEA 3RH7A 2ECRA 2QCKA 3U35A 2FURA 2HQ7A 5CHOA 3K88A 1USFA 1RFEA 1T9MA 4HMSA 3R5YA 2ARZA 3BA3A 2X1KA 3R5LA 1W3RA 1W3PA 2ASFA 3EC6A 4R82A 2VPAA 3DB0A 2IABA 3HMZA 4XHYA 3ZOHA 3KYGA 2R6VA 4HMWA 3F7EA 1XXOA 1AXJA 2HQ9A 3DNHA 1WLKA 2IG6A 3ZOCA 3ZODA 2Q9KA 2HTDA 4IRAA 1W3OA 2A2JA 1RZ0A 1VL7A 3R5RA 4HMUA 1RZ1A 1I0RA 3KYFA 1EJEA 3A6QA 2ED4A 2PTFA 1Y30A 4L82A 4ZKYA 2OU5A 1W9AA 4F07A 3NFWA 3BNKA 3K87A 4HMXA 3DMBA 3E4VA 3TGVA 2RE7A 2RDEA 4HX6A 1G78A 3U0IA 2E83A 3GASA 4Y9IA 1G76A 1YLNA 2I02A 1WLIA 3AMFA 1G77A 1USCA 2FHQA 4Z85A 5BNCA 3U5WA 1CI0A 3ZOGA 2I51A 3CP3A 2D5MA 2GJGA 3IN6A 2QEAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FG9 A;  2AQ6 A;  2IML A;  3HY8 A;  5CHE C;  4YBN A;  4N7R C;  1FLM A;  3ZOF A;  4QVB A;  3FKH A;  3CB0 A;  2ECU A;  3H96 A;  4YWN A;  2R0X A;  1NRG A;  3K86 A;  2HHZ A;  2D37 A;  3BPK A;  3ZOE A;  1WV4 A;  5ESC A;  1G79 A;  1TY9 A;  2X1J A;  3R5W A;  3SWJ A;  3VYA A;  1JNW A;  1I0S A;  2OL5 A;  3AWH A;  2D36 A;  5JAB A;  3PFT A;  1XHN A;  1DNL A;  1W3Q A;  3B5M A;  3U34 A;  1YOA A;  2HTI A;  1WGB A;  3A6R A;  4HMT A;  2D38 A;  2NR4 A;  3R5P A;  3VY2 A;  3R5Z A;  4XJ2 A;  3A20 A;  4HMV A;  3VY5 A;  3FGE A;  3RH7 A;  2ECR A;  2QCK A;  3U35 A;  2FUR A;  2HQ7 A;  5CHO A;  3K88 A;  1USF A;  1RFE A;  1T9M A;  4HMS A;  3R5Y A;  2ARZ A;  3BA3 A;  2X1K A;  3R5L A;  1W3R A;  1W3P A;  2ASF A;  3EC6 A;  4R82 A;  2VPA A;  3DB0 A;  2IAB A;  3HMZ A;  4XHY A;  3ZOH A;  3KYG A;  2R6V A;  4HMW A;  3F7E A;  1XXO A;  1AXJ A;  2HQ9 A;  3DNH A;  1WLK A;  2IG6 A;  3ZOC A;  3ZOD A;  2Q9K A;  2HTD A;  4IRA A;  1W3O A;  2A2J A;  1RZ0 A;  1VL7 A;  3R5R A;  4HMU A;  1RZ1 A;  1I0R A;  3KYF A;  1EJE A;  3A6Q A;  2ED4 A;  2PTF A;  1Y30 A;  4L82 A;  4ZKY A;  2OU5 A;  1W9A A;  4F07 A;  3NFW A;  3BNK A;  3K87 A;  4HMX A;  3DMB A;  3E4V A;  3TGV A;  2RE7 A;  2RDE A;  4HX6 A;  1G78 A;  3U0I A;  2E83 A;  3GAS A;  4Y9I A;  1G76 A;  1YLN A;  2I02 A;  1WLI A;  3AMF A;  1G77 A;  1USC A;  2FHQ A;  4Z85 A;  5BNC A;  3U5W A;  1CI0 A;  3ZOG A;  2I51 A;  3CP3 A;  2D5M A;  2GJG A;  3IN6 A;  2QEA A; 
#chains in the Genus database with same CATH topology
 2FG9 A;  2AQ6 A;  2IML A;  3HY8 A;  5CHE C;  4YBN A;  4N7R C;  1FLM A;  3EAA A;  3ZOF A;  4QVB A;  3FKH A;  3CB0 A;  2ECU A;  3H96 A;  4YWN A;  2R0X A;  1NRG A;  3K86 A;  2HHZ A;  2D37 A;  3BPK A;  3ZOE A;  1WV4 A;  5ESC A;  1G79 A;  1TY9 A;  4MTK A;  2X1J A;  3R5W A;  3SWJ A;  3VYA A;  1JNW A;  1I0S A;  2OL5 A;  3AWH A;  2D36 A;  5JAB A;  3PFT A;  1XHN A;  1DNL A;  1W3Q A;  3B5M A;  3U34 A;  1YOA A;  2HTI A;  1WGB A;  3A6R A;  4HMT A;  2D38 A;  2NR4 A;  3R5P A;  3HE1 A;  3VY2 A;  3R5Z A;  4XJ2 A;  3A20 A;  4HMV A;  3VY5 A;  3FGE A;  3RH7 A;  2ECR A;  2QCK A;  3U35 A;  2FUR A;  2HQ7 A;  2L1T A;  5CHO A;  3K88 A;  1USF A;  1RFE A;  1T9M A;  4HMS A;  3R5Y A;  2ARZ A;  3BA3 A;  2X1K A;  2GUJ A;  3R5L A;  1W3R A;  1W3P A;  2ASF A;  3EC6 A;  4R82 A;  2VPA A;  3DB0 A;  2P5Z X;  2IAB A;  3HMZ A;  4XHY A;  3ZOH A;  3KYG A;  2R6V A;  4HMW A;  3F7E A;  1XXO A;  1AXJ A;  4W64 A;  2HQ9 A;  3DNH A;  1WLK A;  2IG6 A;  3ZOC A;  3ZOD A;  2Q9K A;  2HTD A;  4IRA A;  1W3O A;  2A2J A;  1RZ0 A;  1VL7 A;  3R5R A;  4HMU A;  3V4H A;  1RZ1 A;  1I0R A;  3KYF A;  1EJE A;  3A6Q A;  2ED4 A;  2PTF A;  1Y30 A;  4L82 A;  4ZKY A;  2OU5 A;  1W9A A;  4F07 A;  3NFW A;  3BNK A;  3K87 A;  4HMX A;  3DMB A;  3E4V A;  3TGV A;  2RE7 A;  4HKH A;  2RDE A;  4HX6 A;  1G78 A;  3U0I A;  2E83 A;  3GAS A;  4Y9I A;  1G76 A;  1YLN A;  1Y12 A;  2I02 A;  1WLI A;  3AMF A;  1G77 A;  1USC A;  2FHQ A;  4UHV A;  4Z85 A;  5BNC A;  3U5W A;  1CI0 A;  4TV4 A;  2I51 A;  2K4Q A;  3CP3 A;  3ZOG A;  2D5M A;  2GJG A;  3IN6 A;  2QEA A; 
#chains in the Genus database with same CATH homology
 2FG9 A;  2AQ6 A;  2IML A;  3HY8 A;  5CHE C;  4YBN A;  4N7R C;  1FLM A;  3ZOF A;  4QVB A;  3FKH A;  3CB0 A;  2ECU A;  3H96 A;  4YWN A;  2R0X A;  1NRG A;  3K86 A;  2HHZ A;  2D37 A;  3BPK A;  3ZOE A;  1WV4 A;  5ESC A;  1G79 A;  1TY9 A;  2X1J A;  3R5W A;  3SWJ A;  3VYA A;  1JNW A;  1I0S A;  2OL5 A;  3AWH A;  2D36 A;  5JAB A;  3PFT A;  1XHN A;  1DNL A;  1W3Q A;  3B5M A;  3U34 A;  1YOA A;  2HTI A;  1WGB A;  3A6R A;  4HMT A;  2D38 A;  2NR4 A;  3R5P A;  3VY2 A;  3R5Z A;  4XJ2 A;  3A20 A;  4HMV A;  3VY5 A;  3FGE A;  3RH7 A;  2ECR A;  2QCK A;  3U35 A;  2FUR A;  2HQ7 A;  5CHO A;  3K88 A;  1USF A;  1RFE A;  1T9M A;  4HMS A;  3R5Y A;  2ARZ A;  3BA3 A;  2X1K A;  3R5L A;  1W3R A;  1W3P A;  2ASF A;  3EC6 A;  4R82 A;  2VPA A;  3DB0 A;  2IAB A;  3HMZ A;  4XHY A;  3ZOH A;  3KYG A;  2R6V A;  4HMW A;  3F7E A;  1XXO A;  1AXJ A;  2HQ9 A;  3DNH A;  1WLK A;  2IG6 A;  3ZOC A;  3ZOD A;  2Q9K A;  2HTD A;  4IRA A;  1W3O A;  2A2J A;  1RZ0 A;  1VL7 A;  3R5R A;  4HMU A;  1RZ1 A;  1I0R A;  3KYF A;  1EJE A;  3A6Q A;  2ED4 A;  2PTF A;  1Y30 A;  4L82 A;  4ZKY A;  2OU5 A;  1W9A A;  4F07 A;  3NFW A;  3BNK A;  3K87 A;  4HMX A;  3DMB A;  3E4V A;  3TGV A;  2RE7 A;  2RDE A;  4HX6 A;  1G78 A;  3U0I A;  2E83 A;  3GAS A;  4Y9I A;  1G76 A;  1YLN A;  2I02 A;  1WLI A;  3AMF A;  1G77 A;  1USC A;  2FHQ A;  4Z85 A;  5BNC A;  3U5W A;  1CI0 A;  3ZOG A;  2I51 A;  3CP3 A;  2D5M A;  2GJG A;  3IN6 A;  2QEA A; 
1YOAA
similar chains in the Genus database (40% sequence similarity)
None
similar chains in the pdb database (40% sequence similarity)

 
#similar chains in the Genus database (40% sequence similarity)
1YOA A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)


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