1WGB | Genus

Total Genus 34

Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	159
structure length	159
Chain Sequence	MNLEAKKKVLRSFTYGLYVLTAKDGDEVAAGTVNWVTQASFQPPLVAVGLKRDSHLHALVERTGKLALMTLAHDQKAIAQDFFKPTVREGDRLNGHPFEPSPTFGLPLLTELPYWLEAEVRHLYPGGDHSLVVAEVVEAGVRREEKPLVMWDTGWFYGG

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__450184220916519__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__450184220916519__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/1WGB/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__450184220916519__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"450184220916519","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/1WGB/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__450184220916519__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of a probable flavoprotein from Thermus thermophilus HB8 rcsb
molecule keywords	probable flavoprotein
molecule tags	Oxidoreductase
source organism	Thermus thermophilus
total genus	34
structure length	159
sequence length	159
ec nomenclature
pdb deposition date	2004-05-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01613	Flavin_Reduct	Flavin reductase like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	1wgbA00

1W3QA 2HTDA 1FLMA 4HMWA 1CI0A 2I02A 4HX6A 1XHNA 2OU5A 1TY9A 1W3PA 1WGBA 3KYGA 3H96A 2D38A 2FG9A 3U0IA 2RE7A 1WLKA 3CP3A 3ZOGA 2AQ6A 2R6VA 3K86A 3KYFA 2VPAA 4IRAA 3EC6A 3DNHA 3U34A 2HTIA 1XXOA 4L82A 2ARZA 2I51A 2IMLA 2RDEA 4XHYA 3B5MA 3E4VA 5ESCA 2ASFA 3ZODA 3R5LA 3A20A 3PFTA 4HMVA 2FHQA 3RH7A 1WLIA 3ZOFA 2HHZA 1T9MA 3VY2A 3VY5A 2ECUA 3K88A 4YWNA 3U35A 4HMXA 1G78A 1G79A 3ZOCA 2IG6A 4HMTA 1USCA 3IN6A 5CHEC 3ZOHA 4Y9IA 1W3RA 2NR4A 4YBNA 3R5PA 5JABA 2HQ9A 2HQ7A 4ZKYA 3FKHA 1RFEA 1YOAA 2X1KA 4HMSA 3HMZA 2Q9KA 2R0XA 1RZ0A 3A6RA 4QVBA 3SWJA 3ZOEA 1I0RA 2ED4A 1JNWA 3K87A 3TGVA 1W3OA 1Y30A 2QEAA 2A2JA 3R5RA 4N7RC 3U5WA 2OL5A 3R5ZA 1NRGA 1EJEA 3FGEA 4XJ2A 4HMUA 2D36A 2IABA 2E83A 3R5YA 3DMBA 3A6QA 3F7EA 3HY8A 1I0SA 3R5WA 2GJGA 1USFA 3BNKA 3AMFA 5CHOA 3VYAA 1RZ1A 1YLNA 3DB0A 2PTFA 3GASA 3AWHA 4Z85A 1WV4A 2D5MA 4F07A 4R82A 1AXJA 5BNCA 2X1JA 3CB0A 3NFWA 2FURA 2D37A 3BPKA 1W9AA 1VL7A 1DNLA 1G76A 1G77A 3BA3A 2ECRA 2QCKA
chains in the Genus database with same CATH superfamily

1W3QA 2HTDA 1FLMA 4HMWA 1CI0A 2I02A 4HX6A 1XHNA 2OU5A 1TY9A 1W3PA 1WGBA 3HE1A 2L1TA 3KYGA 3H96A 2D38A 2FG9A 3U0IA 4HKHA 2RE7A 4UHVA 1WLKA 3CP3A 3ZOGA 2AQ6A 2R6VA 3K86A 3KYFA 2VPAA 4IRAA 3EC6A 3DNHA 3U34A 2HTIA 1XXOA 4L82A 2ARZA 2I51A 2IMLA 2RDEA 4XHYA 3B5MA 3E4VA 5ESCA 2ASFA 3ZODA 3R5LA 3A20A 3PFTA 4HMVA 2FHQA 3RH7A 1WLIA 3ZOFA 2HHZA 1T9MA 3VY2A 3V4HA 3VY5A 2ECUA 3K88A 4YWNA 3U35A 4HMXA 3EAAA 1G78A 1G79A 3ZOCA 2IG6A 4HMTA 1USCA 3IN6A 5CHEC 3ZOHA 4Y9IA 1W3RA 2NR4A 4YBNA 3R5PA 5JABA 2HQ9A 2HQ7A 4ZKYA 3FKHA 1RFEA 1YOAA 2X1KA 4HMSA 3HMZA 2Q9KA 2R0XA 1RZ0A 3A6RA 4QVBA 3SWJA 3ZOEA 2P5ZX 1I0RA 2ED4A 1JNWA 3K87A 3TGVA 1W3OA 1Y30A 2QEAA 2A2JA 2GUJA 1Y12A 3R5RA 2OL5A 4N7RC 3U5WA 3R5ZA 1NRGA 1EJEA 3FGEA 4TV4A 4XJ2A 4HMUA 2D36A 2IABA 2E83A 3R5YA 3DMBA 3A6QA 3F7EA 3HY8A 1I0SA 3R5WA 2GJGA 1USFA 3BNKA 3AMFA 5CHOA 3VYAA 1RZ1A 1YLNA 4W64A 3DB0A 2PTFA 3GASA 3AWHA 4Z85A 1WV4A 2D5MA 4F07A 4R82A 1AXJA 5BNCA 2X1JA 3CB0A 3NFWA 4MTKA 2FURA 2D37A 3BPKA 1W9AA 2K4QA 1VL7A 1DNLA 1G76A 1G77A 3BA3A 2ECRA 2QCKA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1W3Q A;  2HTD A;  1FLM A;  4HMW A;  1CI0 A;  2I02 A;  4HX6 A;  1XHN A;  2OU5 A;  1TY9 A;  1W3P A;  1WGB A;  3KYG A;  3H96 A;  2D38 A;  2FG9 A;  3U0I A;  2RE7 A;  1WLK A;  3CP3 A;  3ZOG A;  2AQ6 A;  2R6V A;  3K86 A;  3KYF A;  2VPA A;  4IRA A;  3EC6 A;  3DNH A;  3U34 A;  2HTI A;  1XXO A;  4L82 A;  2ARZ A;  2I51 A;  2IML A;  2RDE A;  4XHY A;  3B5M A;  3E4V A;  5ESC A;  2ASF A;  3ZOD A;  3R5L A;  3A20 A;  3PFT A;  4HMV A;  2FHQ A;  3RH7 A;  1WLI A;  3ZOF A;  2HHZ A;  1T9M A;  3VY2 A;  3VY5 A;  2ECU A;  3K88 A;  4YWN A;  3U35 A;  4HMX A;  1G78 A;  1G79 A;  3ZOC A;  2IG6 A;  4HMT A;  1USC A;  3IN6 A;  5CHE C;  3ZOH A;  4Y9I A;  1W3R A;  2NR4 A;  4YBN A;  3R5P A;  5JAB A;  2HQ9 A;  2HQ7 A;  4ZKY A;  3FKH A;  1RFE A;  1YOA A;  2X1K A;  4HMS A;  3HMZ A;  2Q9K A;  2R0X A;  1RZ0 A;  3A6R A;  4QVB A;  3SWJ A;  3ZOE A;  1I0R A;  2ED4 A;  1JNW A;  3K87 A;  3TGV A;  1W3O A;  1Y30 A;  2QEA A;  2A2J A;  3R5R A;  4N7R C;  3U5W A;  2OL5 A;  3R5Z A;  1NRG A;  1EJE A;  3FGE A;  4XJ2 A;  4HMU A;  2D36 A;  2IAB A;  2E83 A;  3R5Y A;  3DMB A;  3A6Q A;  3F7E A;  3HY8 A;  1I0S A;  3R5W A;  2GJG A;  1USF A;  3BNK A;  3AMF A;  5CHO A;  3VYA A;  1RZ1 A;  1YLN A;  3DB0 A;  2PTF A;  3GAS A;  3AWH A;  4Z85 A;  1WV4 A;  2D5M A;  4F07 A;  4R82 A;  1AXJ A;  5BNC A;  2X1J A;  3CB0 A;  3NFW A;  2FUR A;  2D37 A;  3BPK A;  1W9A A;  1VL7 A;  1DNL A;  1G76 A;  1G77 A;  3BA3 A;  2ECR A;  2QCK A; 
#chains in the Genus database with same CATH topology
 1W3Q A;  2HTD A;  1FLM A;  4HMW A;  1CI0 A;  2I02 A;  4HX6 A;  1XHN A;  2OU5 A;  1TY9 A;  1W3P A;  1WGB A;  3HE1 A;  2L1T A;  3KYG A;  3H96 A;  2D38 A;  2FG9 A;  3U0I A;  4HKH A;  2RE7 A;  4UHV A;  1WLK A;  3CP3 A;  3ZOG A;  2AQ6 A;  2R6V A;  3K86 A;  3KYF A;  2VPA A;  4IRA A;  3EC6 A;  3DNH A;  3U34 A;  2HTI A;  1XXO A;  4L82 A;  2ARZ A;  2I51 A;  2IML A;  2RDE A;  4XHY A;  3B5M A;  3E4V A;  5ESC A;  2ASF A;  3ZOD A;  3R5L A;  3A20 A;  3PFT A;  4HMV A;  2FHQ A;  3RH7 A;  1WLI A;  3ZOF A;  2HHZ A;  1T9M A;  3VY2 A;  3V4H A;  3VY5 A;  2ECU A;  3K88 A;  4YWN A;  3U35 A;  4HMX A;  3EAA A;  1G78 A;  1G79 A;  3ZOC A;  2IG6 A;  4HMT A;  1USC A;  3IN6 A;  5CHE C;  3ZOH A;  4Y9I A;  1W3R A;  2NR4 A;  4YBN A;  3R5P A;  5JAB A;  2HQ9 A;  2HQ7 A;  4ZKY A;  3FKH A;  1RFE A;  1YOA A;  2X1K A;  4HMS A;  3HMZ A;  2Q9K A;  2R0X A;  1RZ0 A;  3A6R A;  4QVB A;  3SWJ A;  3ZOE A;  2P5Z X;  1I0R A;  2ED4 A;  1JNW A;  3K87 A;  3TGV A;  1W3O A;  1Y30 A;  2QEA A;  2A2J A;  2GUJ A;  1Y12 A;  3R5R A;  2OL5 A;  4N7R C;  3U5W A;  3R5Z A;  1NRG A;  1EJE A;  3FGE A;  4TV4 A;  4XJ2 A;  4HMU A;  2D36 A;  2IAB A;  2E83 A;  3R5Y A;  3DMB A;  3A6Q A;  3F7E A;  3HY8 A;  1I0S A;  3R5W A;  2GJG A;  1USF A;  3BNK A;  3AMF A;  5CHO A;  3VYA A;  1RZ1 A;  1YLN A;  4W64 A;  3DB0 A;  2PTF A;  3GAS A;  3AWH A;  4Z85 A;  1WV4 A;  2D5M A;  4F07 A;  4R82 A;  1AXJ A;  5BNC A;  2X1J A;  3CB0 A;  3NFW A;  4MTK A;  2FUR A;  2D37 A;  3BPK A;  1W9A A;  2K4Q A;  1VL7 A;  1DNL A;  1G76 A;  1G77 A;  3BA3 A;  2ECR A;  2QCK A; 
#chains in the Genus database with same CATH homology
 1W3Q A;  2HTD A;  1FLM A;  4HMW A;  1CI0 A;  2I02 A;  4HX6 A;  1XHN A;  2OU5 A;  1TY9 A;  1W3P A;  1WGB A;  3KYG A;  3H96 A;  2D38 A;  2FG9 A;  3U0I A;  2RE7 A;  1WLK A;  3CP3 A;  3ZOG A;  2AQ6 A;  2R6V A;  3K86 A;  3KYF A;  2VPA A;  4IRA A;  3EC6 A;  3DNH A;  3U34 A;  2HTI A;  1XXO A;  4L82 A;  2ARZ A;  2I51 A;  2IML A;  2RDE A;  4XHY A;  3B5M A;  3E4V A;  5ESC A;  2ASF A;  3ZOD A;  3R5L A;  3A20 A;  3PFT A;  4HMV A;  2FHQ A;  3RH7 A;  1WLI A;  3ZOF A;  2HHZ A;  1T9M A;  3VY2 A;  3VY5 A;  2ECU A;  3K88 A;  4YWN A;  3U35 A;  4HMX A;  1G78 A;  1G79 A;  3ZOC A;  2IG6 A;  4HMT A;  1USC A;  3IN6 A;  5CHE C;  3ZOH A;  4Y9I A;  1W3R A;  2NR4 A;  4YBN A;  3R5P A;  5JAB A;  2HQ9 A;  2HQ7 A;  4ZKY A;  3FKH A;  1RFE A;  1YOA A;  2X1K A;  4HMS A;  3HMZ A;  2Q9K A;  2R0X A;  1RZ0 A;  3A6R A;  4QVB A;  3SWJ A;  3ZOE A;  1I0R A;  2ED4 A;  1JNW A;  3K87 A;  3TGV A;  1W3O A;  1Y30 A;  2QEA A;  2A2J A;  3R5R A;  4N7R C;  3U5W A;  2OL5 A;  3R5Z A;  1NRG A;  1EJE A;  3FGE A;  4XJ2 A;  4HMU A;  2D36 A;  2IAB A;  2E83 A;  3R5Y A;  3DMB A;  3A6Q A;  3F7E A;  3HY8 A;  1I0S A;  3R5W A;  2GJG A;  1USF A;  3BNK A;  3AMF A;  5CHO A;  3VYA A;  1RZ1 A;  1YLN A;  3DB0 A;  2PTF A;  3GAS A;  3AWH A;  4Z85 A;  1WV4 A;  2D5M A;  4F07 A;  4R82 A;  1AXJ A;  5BNC A;  2X1J A;  3CB0 A;  3NFW A;  2FUR A;  2D37 A;  3BPK A;  1W9A A;  1VL7 A;  1DNL A;  1G76 A;  1G77 A;  3BA3 A;  2ECR A;  2QCK A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1WGBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations