1WGBA

Crystal structure of a probable flavoprotein from thermus thermophilus hb8
Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
159
structure length
159
Chain Sequence
MNLEAKKKVLRSFTYGLYVLTAKDGDEVAAGTVNWVTQASFQPPLVAVGLKRDSHLHALVERTGKLALMTLAHDQKAIAQDFFKPTVREGDRLNGHPFEPSPTFGLPLLTELPYWLEAEVRHLYPGGDHSLVVAEVVEAGVRREEKPLVMWDTGWFYGG
2040608010012014014012010080604020
051015202530Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (18-24)S5 (65-70)TI2 (102-105)TII'1 (24-27)TVIII2 (51-54)O1 (34-36)S2 (27-33)S4 (45-51)TI4 (151-154)S3 (36-40)TVIII1 (40-43)S11 (129-141)TII'3 (126-129)AH2 (55-63)EMPTYS10 (114-126)TI1 (72-75)S9 (107-109)AH3 (75-82)S7 (92-93)TII'2 (89-92)S6 (88-89)S8 (96-100)TIV2 (92-95)TIV3 (101-104)TI3 (109-112)TIV1 (41-44)AH1 (3-11)Updating...
connected with : NaN
publication title Crystal structure of a probable flavoprotein from Thermus thermophilus HB8
rcsb
molecule keywords probable flavoprotein
molecule tags Oxidoreductase
source organism Thermus thermophilus
total genus 34
structure length 159
sequence length 159
ec nomenclature
pdb deposition date 2004-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1wgbA00
3R5ZA 3NFWA 3AMFA 1YLNA 3VY2A 1G76A 1WLIA 3HY8A 2HTIA 1USCA 1WGBA 3R5WA 3K87A 1G77A 3U34A 1W9AA 4HMWA 2HQ7A 4ZKYA 2HHZA 4HMSA 2ASFA 4L82A 4XJ2A 1VL7A 1XHNA 3A20A 1RFEA 4HMXA 4IRAA 1T9MA 2I02A 2IG6A 2ECRA 2IMLA 1W3PA 4HX6A 3U5WA 2E83A 2Q9KA 2FHQA 2OU5A 3BPKA 1G79A 2D37A 2QEAA 3RH7A 3SWJA 3ZODA 2D38A 2R6VA 3E4VA 3VY5A 3HMZA 1I0RA 2IABA 2ED4A 3CP3A 3K88A 1I0SA 3DB0A 2RE7A 1RZ0A 3U0IA 1NRGA 3A6QA 3ZOHA 3GASA 2GJGA 3FKHA 1EJEA 2HQ9A 2QCKA 4QVBA 1WV4A 2NR4A 4F07A 4YWNA 2FG9A 3ZOGA 5ESCA 3ZOEA 4HMUA 1RZ1A 4YBNA 3F7EA 3R5RA 1TY9A 3KYFA 1JNWA 3VYAA 1YOAA 2VPAA 3DMBA 2OL5A 2A2JA 2RDEA 3B5MA 4Y9IA 3EC6A 3KYGA 2ECUA 1USFA 2FURA 2HTDA 2D5MA 3FGEA 4HMVA 3U35A 2AQ6A 5CHEC 3ZOCA 2D36A 4XHYA 3H96A 2X1KA 2ARZA 3ZOFA 1AXJA 1W3QA 3R5PA 2R0XA 1XXOA 4HMTA 2X1JA 3R5LA 5BNCA 1FLMA 1WLKA 4Z85A 1W3OA 4N7RC 3PFTA 1W3RA 1G78A 1Y30A 2PTFA 3DNHA 1DNLA 3R5YA 3TGVA 2I51A 5JABA 3K86A 3BA3A 3A6RA 3AWHA 3CB0A 3BNKA 3IN6A 4R82A 1CI0A 5CHOA
chains in the Genus database with same CATH superfamily
3R5ZA 3NFWA 3AMFA 1YLNA 3VY2A 1G76A 3EAAA 1WLIA 3HY8A 2HTIA 1USCA 1WGBA 3R5WA 3K87A 1G77A 3U34A 1W9AA 4HMWA 2HQ7A 4ZKYA 2HHZA 4HMSA 2ASFA 4L82A 4XJ2A 1VL7A 1XHNA 2L1TA 3A20A 1RFEA 4HMXA 4IRAA 1T9MA 2I02A 2IG6A 2ECRA 2IMLA 1W3PA 4HX6A 3U5WA 2E83A 2Q9KA 2FHQA 2OU5A 3BPKA 1G79A 2D37A 2QEAA 3RH7A 3SWJA 3ZODA 2D38A 2R6VA 3E4VA 3VY5A 3HMZA 1I0RA 2IABA 2ED4A 3CP3A 4W64A 3K88A 1I0SA 3DB0A 2K4QA 2RE7A 1RZ0A 3U0IA 4UHVA 1NRGA 3HE1A 3A6QA 3ZOHA 3GASA 2GJGA 3FKHA 1EJEA 2HQ9A 2QCKA 4QVBA 1WV4A 2NR4A 4F07A 4YWNA 2FG9A 3ZOGA 5ESCA 3ZOEA 4HMUA 1RZ1A 4YBNA 3F7EA 3V4HA 3R5RA 1TY9A 3KYFA 1JNWA 3VYAA 1YOAA 2VPAA 3DMBA 2OL5A 2A2JA 2RDEA 2GUJA 3B5MA 4Y9IA 3EC6A 3KYGA 2ECUA 1USFA 2FURA 2HTDA 2D5MA 3FGEA 4HMVA 3U35A 2AQ6A 4MTKA 5CHEC 3ZOCA 2D36A 4XHYA 3H96A 2ARZA 2X1KA 3ZOFA 1AXJA 1W3QA 3R5PA 2R0XA 4HKHA 1XXOA 4HMTA 4TV4A 1Y12A 2X1JA 3R5LA 5BNCA 1FLMA 1WLKA 4Z85A 1W3OA 4N7RC 3PFTA 1W3RA 1G78A 1Y30A 2PTFA 3DNHA 1DNLA 3R5YA 3TGVA 2I51A 5JABA 3K86A 3BA3A 3A6RA 3AWHA 3CB0A 3BNKA 3IN6A 4R82A 1CI0A 2P5ZX 5CHOA
chains in the Genus database with same CATH topology
3R5ZA 3NFWA 3AMFA 1YLNA 3VY2A 1G76A 1WLIA 3HY8A 2HTIA 1USCA 1WGBA 3R5WA 3K87A 1G77A 3U34A 1W9AA 4HMWA 2HQ7A 4ZKYA 2HHZA 4HMSA 2ASFA 4L82A 4XJ2A 1VL7A 1XHNA 3A20A 1RFEA 4HMXA 4IRAA 1T9MA 2I02A 2IG6A 2ECRA 2IMLA 1W3PA 4HX6A 3U5WA 2E83A 2Q9KA 2FHQA 2OU5A 3BPKA 1G79A 2D37A 2QEAA 3RH7A 3SWJA 3ZODA 2D38A 2R6VA 3E4VA 3VY5A 3HMZA 1I0RA 2IABA 2ED4A 3CP3A 3K88A 1I0SA 3DB0A 2RE7A 1RZ0A 3U0IA 1NRGA 3A6QA 3ZOHA 3GASA 2GJGA 3FKHA 1EJEA 2HQ9A 2QCKA 4QVBA 1WV4A 2NR4A 4F07A 4YWNA 2FG9A 3ZOGA 5ESCA 3ZOEA 4HMUA 1RZ1A 4YBNA 3F7EA 3R5RA 1TY9A 3KYFA 1JNWA 3VYAA 1YOAA 2VPAA 3DMBA 2OL5A 2A2JA 2RDEA 3B5MA 4Y9IA 3EC6A 3KYGA 2ECUA 1USFA 2FURA 2HTDA 2D5MA 3FGEA 4HMVA 3U35A 2AQ6A 5CHEC 3ZOCA 2D36A 4XHYA 3H96A 2X1KA 2ARZA 3ZOFA 1AXJA 1W3QA 3R5PA 2R0XA 1XXOA 4HMTA 2X1JA 3R5LA 5BNCA 1FLMA 1WLKA 4Z85A 1W3OA 4N7RC 3PFTA 1W3RA 1G78A 1Y30A 2PTFA 3DNHA 1DNLA 3R5YA 3TGVA 2I51A 5JABA 3K86A 3BA3A 3A6RA 3AWHA 3CB0A 3BNKA 3IN6A 4R82A 1CI0A 5CHOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R5Z A;  3NFW A;  3AMF A;  1YLN A;  3VY2 A;  1G76 A;  1WLI A;  3HY8 A;  2HTI A;  1USC A;  1WGB A;  3R5W A;  3K87 A;  1G77 A;  3U34 A;  1W9A A;  4HMW A;  2HQ7 A;  4ZKY A;  2HHZ A;  4HMS A;  2ASF A;  4L82 A;  4XJ2 A;  1VL7 A;  1XHN A;  3A20 A;  1RFE A;  4HMX A;  4IRA A;  1T9M A;  2I02 A;  2IG6 A;  2ECR A;  2IML A;  1W3P A;  4HX6 A;  3U5W A;  2E83 A;  2Q9K A;  2FHQ A;  2OU5 A;  3BPK A;  1G79 A;  2D37 A;  2QEA A;  3RH7 A;  3SWJ A;  3ZOD A;  2D38 A;  2R6V A;  3E4V A;  3VY5 A;  3HMZ A;  1I0R A;  2IAB A;  2ED4 A;  3CP3 A;  3K88 A;  1I0S A;  3DB0 A;  2RE7 A;  1RZ0 A;  3U0I A;  1NRG A;  3A6Q A;  3ZOH A;  3GAS A;  2GJG A;  3FKH A;  1EJE A;  2HQ9 A;  2QCK A;  4QVB A;  1WV4 A;  2NR4 A;  4F07 A;  4YWN A;  2FG9 A;  3ZOG A;  5ESC A;  3ZOE A;  4HMU A;  1RZ1 A;  4YBN A;  3F7E A;  3R5R A;  1TY9 A;  3KYF A;  1JNW A;  3VYA A;  1YOA A;  2VPA A;  3DMB A;  2OL5 A;  2A2J A;  2RDE A;  3B5M A;  4Y9I A;  3EC6 A;  3KYG A;  2ECU A;  1USF A;  2FUR A;  2HTD A;  2D5M A;  3FGE A;  4HMV A;  3U35 A;  2AQ6 A;  5CHE C;  3ZOC A;  2D36 A;  4XHY A;  3H96 A;  2X1K A;  2ARZ A;  3ZOF A;  1AXJ A;  1W3Q A;  3R5P A;  2R0X A;  1XXO A;  4HMT A;  2X1J A;  3R5L A;  5BNC A;  1FLM A;  1WLK A;  4Z85 A;  1W3O A;  4N7R C;  3PFT A;  1W3R A;  1G78 A;  1Y30 A;  2PTF A;  3DNH A;  1DNL A;  3R5Y A;  3TGV A;  2I51 A;  5JAB A;  3K86 A;  3BA3 A;  3A6R A;  3AWH A;  3CB0 A;  3BNK A;  3IN6 A;  4R82 A;  1CI0 A;  5CHO A; 
#chains in the Genus database with same CATH topology
 3R5Z A;  3NFW A;  3AMF A;  1YLN A;  3VY2 A;  1G76 A;  3EAA A;  1WLI A;  3HY8 A;  2HTI A;  1USC A;  1WGB A;  3R5W A;  3K87 A;  1G77 A;  3U34 A;  1W9A A;  4HMW A;  2HQ7 A;  4ZKY A;  2HHZ A;  4HMS A;  2ASF A;  4L82 A;  4XJ2 A;  1VL7 A;  1XHN A;  2L1T A;  3A20 A;  1RFE A;  4HMX A;  4IRA A;  1T9M A;  2I02 A;  2IG6 A;  2ECR A;  2IML A;  1W3P A;  4HX6 A;  3U5W A;  2E83 A;  2Q9K A;  2FHQ A;  2OU5 A;  3BPK A;  1G79 A;  2D37 A;  2QEA A;  3RH7 A;  3SWJ A;  3ZOD A;  2D38 A;  2R6V A;  3E4V A;  3VY5 A;  3HMZ A;  1I0R A;  2IAB A;  2ED4 A;  3CP3 A;  4W64 A;  3K88 A;  1I0S A;  3DB0 A;  2K4Q A;  2RE7 A;  1RZ0 A;  3U0I A;  4UHV A;  1NRG A;  3HE1 A;  3A6Q A;  3ZOH A;  3GAS A;  2GJG A;  3FKH A;  1EJE A;  2HQ9 A;  2QCK A;  4QVB A;  1WV4 A;  2NR4 A;  4F07 A;  4YWN A;  2FG9 A;  3ZOG A;  5ESC A;  3ZOE A;  4HMU A;  1RZ1 A;  4YBN A;  3F7E A;  3V4H A;  3R5R A;  1TY9 A;  3KYF A;  1JNW A;  3VYA A;  1YOA A;  2VPA A;  3DMB A;  2OL5 A;  2A2J A;  2RDE A;  2GUJ A;  3B5M A;  4Y9I A;  3EC6 A;  3KYG A;  2ECU A;  1USF A;  2FUR A;  2HTD A;  2D5M A;  3FGE A;  4HMV A;  3U35 A;  2AQ6 A;  4MTK A;  5CHE C;  3ZOC A;  2D36 A;  4XHY A;  3H96 A;  2ARZ A;  2X1K A;  3ZOF A;  1AXJ A;  1W3Q A;  3R5P A;  2R0X A;  4HKH A;  1XXO A;  4HMT A;  4TV4 A;  1Y12 A;  2X1J A;  3R5L A;  5BNC A;  1FLM A;  1WLK A;  4Z85 A;  1W3O A;  4N7R C;  3PFT A;  1W3R A;  1G78 A;  1Y30 A;  2PTF A;  3DNH A;  1DNL A;  3R5Y A;  3TGV A;  2I51 A;  5JAB A;  3K86 A;  3BA3 A;  3A6R A;  3AWH A;  3CB0 A;  3BNK A;  3IN6 A;  4R82 A;  1CI0 A;  2P5Z X;  5CHO A; 
#chains in the Genus database with same CATH homology
 3R5Z A;  3NFW A;  3AMF A;  1YLN A;  3VY2 A;  1G76 A;  1WLI A;  3HY8 A;  2HTI A;  1USC A;  1WGB A;  3R5W A;  3K87 A;  1G77 A;  3U34 A;  1W9A A;  4HMW A;  2HQ7 A;  4ZKY A;  2HHZ A;  4HMS A;  2ASF A;  4L82 A;  4XJ2 A;  1VL7 A;  1XHN A;  3A20 A;  1RFE A;  4HMX A;  4IRA A;  1T9M A;  2I02 A;  2IG6 A;  2ECR A;  2IML A;  1W3P A;  4HX6 A;  3U5W A;  2E83 A;  2Q9K A;  2FHQ A;  2OU5 A;  3BPK A;  1G79 A;  2D37 A;  2QEA A;  3RH7 A;  3SWJ A;  3ZOD A;  2D38 A;  2R6V A;  3E4V A;  3VY5 A;  3HMZ A;  1I0R A;  2IAB A;  2ED4 A;  3CP3 A;  3K88 A;  1I0S A;  3DB0 A;  2RE7 A;  1RZ0 A;  3U0I A;  1NRG A;  3A6Q A;  3ZOH A;  3GAS A;  2GJG A;  3FKH A;  1EJE A;  2HQ9 A;  2QCK A;  4QVB A;  1WV4 A;  2NR4 A;  4F07 A;  4YWN A;  2FG9 A;  3ZOG A;  5ESC A;  3ZOE A;  4HMU A;  1RZ1 A;  4YBN A;  3F7E A;  3R5R A;  1TY9 A;  3KYF A;  1JNW A;  3VYA A;  1YOA A;  2VPA A;  3DMB A;  2OL5 A;  2A2J A;  2RDE A;  3B5M A;  4Y9I A;  3EC6 A;  3KYG A;  2ECU A;  1USF A;  2FUR A;  2HTD A;  2D5M A;  3FGE A;  4HMV A;  3U35 A;  2AQ6 A;  5CHE C;  3ZOC A;  2D36 A;  4XHY A;  3H96 A;  2X1K A;  2ARZ A;  3ZOF A;  1AXJ A;  1W3Q A;  3R5P A;  2R0X A;  1XXO A;  4HMT A;  2X1J A;  3R5L A;  5BNC A;  1FLM A;  1WLK A;  4Z85 A;  1W3O A;  4N7R C;  3PFT A;  1W3R A;  1G78 A;  1Y30 A;  2PTF A;  3DNH A;  1DNL A;  3R5Y A;  3TGV A;  2I51 A;  5JAB A;  3K86 A;  3BA3 A;  3A6R A;  3AWH A;  3CB0 A;  3BNK A;  3IN6 A;  4R82 A;  1CI0 A;  5CHO A; 
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