1WV4 | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	208
structure length	162
Chain Sequence	AHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 162 atoms

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162 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure of Escherichia coli pyridoxine 5'-phosphate oxidase in a tetragonal crystal form: insights into the mechanistic pathway of the enzyme. pubmed doi rcsb
molecule keywords	Pyridoxamine 5'-phosphate oxidase
molecule tags	Oxidoreductase
source organism	Escherichia coli
total genus	33
structure length	162
sequence length	208
chains with identical sequence	B
ec nomenclature	ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date	2004-12-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01243	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase
A	PF10590	PNP_phzG_C	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	1wv4A00

3A20A 2HTIA 2RDEA 2D36A 2D5MA 2ECUA 2HQ9A 1TY9A 1EJEA 3RH7A 2FG9A 1CI0A 1USFA 3KYFA 1AXJA 2HHZA 3TGVA 2ECRA 1JNWA 2OU5A 4YBNA 4HMSA 3BNKA 4HMWA 2E83A 1G76A 1W3OA 2HTDA 1RFEA 1XHNA 5BNCA 2ASFA 4N7RC 1W3QA 2ED4A 2FHQA 1RZ1A 3ZOGA 1I0SA 4R82A 2OL5A 3VY5A 3ZOHA 2A2JA 1Y30A 1G78A 4XJ2A 5ESCA 3ZOFA 2FURA 2X1KA 4HMUA 3NFWA 1DNLA 3HY8A 1RZ0A 1W3PA 4QVBA 3HMZA 2PTFA 5CHOA 3K88A 1YLNA 3FKHA 2R0XA 3DNHA 4YWNA 2RE7A 3R5RA 3F7EA 3SWJA 1WLIA 3E4VA 3KYGA 3CP3A 2R6VA 4HMXA 2Q9KA 3DMBA 1NRGA 2I02A 2D38A 1W3RA 3A6QA 3FGEA 3AWHA 2NR4A 3U35A 2IABA 3R5WA 1T9MA 3EC6A 3VYAA 4IRAA 4L82A 4HMTA 2IMLA 4HMVA 3CB0A 2VPAA 1USCA 3R5YA 3ZOCA 1G79A 2IG6A 3B5MA 2QCKA 3IN6A 3ZOEA 2AQ6A 3BA3A 4F07A 3BPKA 1YOAA 2I51A 1WGBA 2ARZA 3DB0A 3K87A 4XHYA 3GASA 3ZODA 1W9AA 2GJGA 1WV4A 5JABA 3AMFA 3PFTA 1VL7A 3A6RA 4Y9IA 3U5WA 2X1JA 4HX6A 4ZKYA 3R5LA 3H96A 5CHEC 4Z85A 1G77A 2D37A 2QEAA 2HQ7A 3VY2A 3U34A 3U0IA 1I0RA 3R5PA 1XXOA 3R5ZA 3K86A 1WLKA 1FLMA
chains in the Genus database with same CATH superfamily

3A20A 2HTIA 2RDEA 2D36A 2D5MA 2ECUA 2HQ9A 1TY9A 1EJEA 3RH7A 2FG9A 1CI0A 1USFA 3KYFA 1AXJA 2HHZA 2K4QA 3TGVA 2ECRA 1JNWA 2OU5A 4YBNA 4HMSA 3BNKA 3EAAA 4HMWA 2E83A 4HKHA 1G76A 1W3OA 2HTDA 1RFEA 1XHNA 5BNCA 2ASFA 4N7RC 1W3QA 2ED4A 2FHQA 1RZ1A 3ZOGA 1I0SA 4R82A 2OL5A 3VY5A 3ZOHA 2A2JA 1Y30A 1G78A 4XJ2A 5ESCA 3ZOFA 2FURA 2X1KA 2GUJA 3NFWA 1DNLA 4HMUA 3HY8A 1RZ0A 1W3PA 4QVBA 3HMZA 2PTFA 5CHOA 3K88A 1YLNA 3FKHA 2R0XA 3DNHA 4YWNA 2RE7A 3R5RA 4MTKA 3HE1A 3F7EA 3SWJA 1WLIA 3E4VA 3KYGA 3CP3A 2R6VA 4HMXA 2Q9KA 3DMBA 1NRGA 2I02A 2D38A 1W3RA 3A6QA 3FGEA 3AWHA 2NR4A 3U35A 2IABA 3R5WA 1T9MA 3EC6A 3VYAA 4IRAA 4L82A 4HMTA 2IMLA 4UHVA 4HMVA 3CB0A 2VPAA 1USCA 3R5YA 3ZOCA 1G79A 2IG6A 3B5MA 4W64A 2QCKA 3IN6A 3ZOEA 2AQ6A 3BA3A 4F07A 3BPKA 1YOAA 2I51A 1WGBA 2ARZA 3DB0A 3K87A 4XHYA 3GASA 4TV4A 3ZODA 1W9AA 2GJGA 1WV4A 2L1TA 5JABA 3AMFA 3PFTA 1VL7A 2P5ZX 3A6RA 4Y9IA 3U5WA 2X1JA 1Y12A 3V4HA 4HX6A 4ZKYA 3R5LA 3H96A 5CHEC 4Z85A 1G77A 2D37A 2QEAA 2HQ7A 3VY2A 3U34A 3U0IA 1I0RA 3R5PA 1XXOA 3R5ZA 3K86A 1WLKA 1FLMA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3A20 A;  2HTI A;  2RDE A;  2D36 A;  2D5M A;  2ECU A;  2HQ9 A;  1TY9 A;  1EJE A;  3RH7 A;  2FG9 A;  1CI0 A;  1USF A;  3KYF A;  1AXJ A;  2HHZ A;  3TGV A;  2ECR A;  1JNW A;  2OU5 A;  4YBN A;  4HMS A;  3BNK A;  4HMW A;  2E83 A;  1G76 A;  1W3O A;  2HTD A;  1RFE A;  1XHN A;  5BNC A;  2ASF A;  4N7R C;  1W3Q A;  2ED4 A;  2FHQ A;  1RZ1 A;  3ZOG A;  1I0S A;  4R82 A;  2OL5 A;  3VY5 A;  3ZOH A;  2A2J A;  1Y30 A;  1G78 A;  4XJ2 A;  5ESC A;  3ZOF A;  2FUR A;  2X1K A;  4HMU A;  3NFW A;  1DNL A;  3HY8 A;  1RZ0 A;  1W3P A;  4QVB A;  3HMZ A;  2PTF A;  5CHO A;  3K88 A;  1YLN A;  3FKH A;  2R0X A;  3DNH A;  4YWN A;  2RE7 A;  3R5R A;  3F7E A;  3SWJ A;  1WLI A;  3E4V A;  3KYG A;  3CP3 A;  2R6V A;  4HMX A;  2Q9K A;  3DMB A;  1NRG A;  2I02 A;  2D38 A;  1W3R A;  3A6Q A;  3FGE A;  3AWH A;  2NR4 A;  3U35 A;  2IAB A;  3R5W A;  1T9M A;  3EC6 A;  3VYA A;  4IRA A;  4L82 A;  4HMT A;  2IML A;  4HMV A;  3CB0 A;  2VPA A;  1USC A;  3R5Y A;  3ZOC A;  1G79 A;  2IG6 A;  3B5M A;  2QCK A;  3IN6 A;  3ZOE A;  2AQ6 A;  3BA3 A;  4F07 A;  3BPK A;  1YOA A;  2I51 A;  1WGB A;  2ARZ A;  3DB0 A;  3K87 A;  4XHY A;  3GAS A;  3ZOD A;  1W9A A;  2GJG A;  1WV4 A;  5JAB A;  3AMF A;  3PFT A;  1VL7 A;  3A6R A;  4Y9I A;  3U5W A;  2X1J A;  4HX6 A;  4ZKY A;  3R5L A;  3H96 A;  5CHE C;  4Z85 A;  1G77 A;  2D37 A;  2QEA A;  2HQ7 A;  3VY2 A;  3U34 A;  3U0I A;  1I0R A;  3R5P A;  1XXO A;  3R5Z A;  3K86 A;  1WLK A;  1FLM A; 
#chains in the Genus database with same CATH topology
 3A20 A;  2HTI A;  2RDE A;  2D36 A;  2D5M A;  2ECU A;  2HQ9 A;  1TY9 A;  1EJE A;  3RH7 A;  2FG9 A;  1CI0 A;  1USF A;  3KYF A;  1AXJ A;  2HHZ A;  2K4Q A;  3TGV A;  2ECR A;  1JNW A;  2OU5 A;  4YBN A;  4HMS A;  3BNK A;  3EAA A;  4HMW A;  2E83 A;  4HKH A;  1G76 A;  1W3O A;  2HTD A;  1RFE A;  1XHN A;  5BNC A;  2ASF A;  4N7R C;  1W3Q A;  2ED4 A;  2FHQ A;  1RZ1 A;  3ZOG A;  1I0S A;  4R82 A;  2OL5 A;  3VY5 A;  3ZOH A;  2A2J A;  1Y30 A;  1G78 A;  4XJ2 A;  5ESC A;  3ZOF A;  2FUR A;  2X1K A;  2GUJ A;  3NFW A;  1DNL A;  4HMU A;  3HY8 A;  1RZ0 A;  1W3P A;  4QVB A;  3HMZ A;  2PTF A;  5CHO A;  3K88 A;  1YLN A;  3FKH A;  2R0X A;  3DNH A;  4YWN A;  2RE7 A;  3R5R A;  4MTK A;  3HE1 A;  3F7E A;  3SWJ A;  1WLI A;  3E4V A;  3KYG A;  3CP3 A;  2R6V A;  4HMX A;  2Q9K A;  3DMB A;  1NRG A;  2I02 A;  2D38 A;  1W3R A;  3A6Q A;  3FGE A;  3AWH A;  2NR4 A;  3U35 A;  2IAB A;  3R5W A;  1T9M A;  3EC6 A;  3VYA A;  4IRA A;  4L82 A;  4HMT A;  2IML A;  4UHV A;  4HMV A;  3CB0 A;  2VPA A;  1USC A;  3R5Y A;  3ZOC A;  1G79 A;  2IG6 A;  3B5M A;  4W64 A;  2QCK A;  3IN6 A;  3ZOE A;  2AQ6 A;  3BA3 A;  4F07 A;  3BPK A;  1YOA A;  2I51 A;  1WGB A;  2ARZ A;  3DB0 A;  3K87 A;  4XHY A;  3GAS A;  4TV4 A;  3ZOD A;  1W9A A;  2GJG A;  1WV4 A;  2L1T A;  5JAB A;  3AMF A;  3PFT A;  1VL7 A;  2P5Z X;  3A6R A;  4Y9I A;  3U5W A;  2X1J A;  1Y12 A;  3V4H A;  4HX6 A;  4ZKY A;  3R5L A;  3H96 A;  5CHE C;  4Z85 A;  1G77 A;  2D37 A;  2QEA A;  2HQ7 A;  3VY2 A;  3U34 A;  3U0I A;  1I0R A;  3R5P A;  1XXO A;  3R5Z A;  3K86 A;  1WLK A;  1FLM A; 
#chains in the Genus database with same CATH homology
 3A20 A;  2HTI A;  2RDE A;  2D36 A;  2D5M A;  2ECU A;  2HQ9 A;  1TY9 A;  1EJE A;  3RH7 A;  2FG9 A;  1CI0 A;  1USF A;  3KYF A;  1AXJ A;  2HHZ A;  3TGV A;  2ECR A;  1JNW A;  2OU5 A;  4YBN A;  4HMS A;  3BNK A;  4HMW A;  2E83 A;  1G76 A;  1W3O A;  2HTD A;  1RFE A;  1XHN A;  5BNC A;  2ASF A;  4N7R C;  1W3Q A;  2ED4 A;  2FHQ A;  1RZ1 A;  3ZOG A;  1I0S A;  4R82 A;  2OL5 A;  3VY5 A;  3ZOH A;  2A2J A;  1Y30 A;  1G78 A;  4XJ2 A;  5ESC A;  3ZOF A;  2FUR A;  2X1K A;  4HMU A;  3NFW A;  1DNL A;  3HY8 A;  1RZ0 A;  1W3P A;  4QVB A;  3HMZ A;  2PTF A;  5CHO A;  3K88 A;  1YLN A;  3FKH A;  2R0X A;  3DNH A;  4YWN A;  2RE7 A;  3R5R A;  3F7E A;  3SWJ A;  1WLI A;  3E4V A;  3KYG A;  3CP3 A;  2R6V A;  4HMX A;  2Q9K A;  3DMB A;  1NRG A;  2I02 A;  2D38 A;  1W3R A;  3A6Q A;  3FGE A;  3AWH A;  2NR4 A;  3U35 A;  2IAB A;  3R5W A;  1T9M A;  3EC6 A;  3VYA A;  4IRA A;  4L82 A;  4HMT A;  2IML A;  4HMV A;  3CB0 A;  2VPA A;  1USC A;  3R5Y A;  3ZOC A;  1G79 A;  2IG6 A;  3B5M A;  2QCK A;  3IN6 A;  3ZOE A;  2AQ6 A;  3BA3 A;  4F07 A;  3BPK A;  1YOA A;  2I51 A;  1WGB A;  2ARZ A;  3DB0 A;  3K87 A;  4XHY A;  3GAS A;  3ZOD A;  1W9A A;  2GJG A;  1WV4 A;  5JAB A;  3AMF A;  3PFT A;  1VL7 A;  3A6R A;  4Y9I A;  3U5W A;  2X1J A;  4HX6 A;  4ZKY A;  3R5L A;  3H96 A;  5CHE C;  4Z85 A;  1G77 A;  2D37 A;  2QEA A;  2HQ7 A;  3VY2 A;  3U34 A;  3U0I A;  1I0R A;  3R5P A;  1XXO A;  3R5Z A;  3K86 A;  1WLK A;  1FLM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1WV4A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations