1WV4 | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	208
structure length	162
Chain Sequence	AHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 162 atoms

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162 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure of Escherichia coli pyridoxine 5'-phosphate oxidase in a tetragonal crystal form: insights into the mechanistic pathway of the enzyme. pubmed doi rcsb
molecule keywords	Pyridoxamine 5'-phosphate oxidase
molecule tags	Oxidoreductase
source organism	Escherichia coli
total genus	33
structure length	162
sequence length	208
chains with identical sequence	B
ec nomenclature	ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date	2004-12-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01243	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase
A	PF10590	PNP_phzG_C	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	1wv4A00

2I51A 4Z85A 1YLNA 4XHYA 3VYAA 2IG6A 3ZODA 3R5PA 3K87A 2R6VA 1USFA 4QVBA 3HY8A 1EJEA 2FG9A 3DB0A 4HMTA 3HMZA 2D37A 3GASA 2QEAA 1W3OA 2NR4A 2AQ6A 2X1JA 1G76A 3KYGA 3A6QA 5CHOA 1Y30A 1FLMA 4HX6A 3ZOGA 3ZOFA 1W3QA 3R5RA 1W9AA 3CB0A 3PFTA 4HMVA 2IABA 1USCA 3BNKA 2X1KA 3ZOHA 2I02A 3FGEA 4IRAA 5CHEC 1AXJA 3A6RA 3E4VA 4YBNA 4R82A 3EC6A 2E83A 3RH7A 3SWJA 3R5ZA 2HHZA 1I0RA 3AWHA 1JNWA 3H96A 2FURA 3R5YA 2HQ9A 3IN6A 5BNCA 4HMSA 4HMUA 3U35A 3R5LA 2HTIA 1XHNA 4ZKYA 3U5WA 2VPAA 3KYFA 4L82A 2ECRA 4N7RC 3K86A 2ED4A 3BA3A 2Q9KA 3FKHA 1RZ1A 1W3PA 3CP3A 4HMWA 1NRGA 1RZ0A 1TY9A 1G77A 3A20A 4YWNA 3U34A 3ZOEA 1WGBA 2A2JA 4XJ2A 2IMLA 3U0IA 2ASFA 3F7EA 3K88A 3TGVA 2ARZA 3ZOCA 2OL5A 2GJGA 2RE7A 1VL7A 4F07A 1RFEA 2OU5A 3VY5A 3VY2A 1G78A 1WLIA 3B5MA 4HMXA 3DMBA 1YOAA 2PTFA 2QCKA 3AMFA 1WLKA 2ECUA 2FHQA 3DNHA 5ESCA 1CI0A 1WV4A 1G79A 1W3RA 2D38A 3NFWA 3R5WA 3BPKA 2HQ7A 2RDEA 1T9MA 1XXOA 2HTDA 1DNLA 4Y9IA 1I0SA 2D36A 2D5MA 2R0XA 5JABA
chains in the Genus database with same CATH superfamily

2I51A 4Z85A 1YLNA 4XHYA 3VYAA 2IG6A 3ZODA 3R5PA 3K87A 2R6VA 1USFA 4QVBA 3HY8A 1EJEA 2FG9A 3DB0A 4HMTA 1Y12A 3HMZA 2L1TA 2D37A 3GASA 2GUJA 2QEAA 1W3OA 2NR4A 2AQ6A 2X1JA 1G76A 4W64A 3KYGA 3A6QA 3HE1A 5CHOA 4UHVA 1Y30A 1FLMA 4HX6A 3ZOGA 3ZOFA 1W3QA 3R5RA 1W9AA 3CB0A 3PFTA 4HMVA 2IABA 1USCA 3BNKA 2X1KA 3ZOHA 2I02A 3FGEA 4IRAA 4TV4A 5CHEC 3A6RA 1AXJA 3E4VA 4YBNA 4R82A 3EC6A 2E83A 3RH7A 3SWJA 3R5ZA 2HHZA 1I0RA 3AWHA 1JNWA 3H96A 2FURA 3R5YA 2HQ9A 3IN6A 5BNCA 4HMSA 4HMUA 2K4QA 3U35A 3EAAA 3R5LA 2HTIA 1XHNA 4ZKYA 3U5WA 2VPAA 3KYFA 4L82A 2ECRA 4N7RC 3K86A 2ED4A 3BA3A 2Q9KA 3FKHA 1RZ1A 1W3PA 3CP3A 4HMWA 1NRGA 1RZ0A 1TY9A 1G77A 3A20A 4YWNA 3U34A 3V4HA 3ZOEA 1WGBA 2A2JA 4XJ2A 2IMLA 3U0IA 2ASFA 3F7EA 3K88A 3TGVA 2ARZA 4MTKA 3ZOCA 2OL5A 2GJGA 2RE7A 1VL7A 4F07A 1RFEA 2OU5A 3VY5A 3VY2A 1G78A 1WLIA 3B5MA 4HMXA 3DMBA 1YOAA 2PTFA 2P5ZX 2QCKA 3AMFA 1WLKA 2ECUA 2FHQA 3DNHA 5ESCA 1CI0A 1WV4A 1G79A 1W3RA 2D38A 3NFWA 4HKHA 3R5WA 3BPKA 2HQ7A 2RDEA 1T9MA 1XXOA 2HTDA 1DNLA 4Y9IA 1I0SA 2D36A 2D5MA 2R0XA 5JABA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2I51 A;  4Z85 A;  1YLN A;  4XHY A;  3VYA A;  2IG6 A;  3ZOD A;  3R5P A;  3K87 A;  2R6V A;  1USF A;  4QVB A;  3HY8 A;  1EJE A;  2FG9 A;  3DB0 A;  4HMT A;  3HMZ A;  2D37 A;  3GAS A;  2QEA A;  1W3O A;  2NR4 A;  2AQ6 A;  2X1J A;  1G76 A;  3KYG A;  3A6Q A;  5CHO A;  1Y30 A;  1FLM A;  4HX6 A;  3ZOG A;  3ZOF A;  1W3Q A;  3R5R A;  1W9A A;  3CB0 A;  3PFT A;  4HMV A;  2IAB A;  1USC A;  3BNK A;  2X1K A;  3ZOH A;  2I02 A;  3FGE A;  4IRA A;  5CHE C;  1AXJ A;  3A6R A;  3E4V A;  4YBN A;  4R82 A;  3EC6 A;  2E83 A;  3RH7 A;  3SWJ A;  3R5Z A;  2HHZ A;  1I0R A;  3AWH A;  1JNW A;  3H96 A;  2FUR A;  3R5Y A;  2HQ9 A;  3IN6 A;  5BNC A;  4HMS A;  4HMU A;  3U35 A;  3R5L A;  2HTI A;  1XHN A;  4ZKY A;  3U5W A;  2VPA A;  3KYF A;  4L82 A;  2ECR A;  4N7R C;  3K86 A;  2ED4 A;  3BA3 A;  2Q9K A;  3FKH A;  1RZ1 A;  1W3P A;  3CP3 A;  4HMW A;  1NRG A;  1RZ0 A;  1TY9 A;  1G77 A;  3A20 A;  4YWN A;  3U34 A;  3ZOE A;  1WGB A;  2A2J A;  4XJ2 A;  2IML A;  3U0I A;  2ASF A;  3F7E A;  3K88 A;  3TGV A;  2ARZ A;  3ZOC A;  2OL5 A;  2GJG A;  2RE7 A;  1VL7 A;  4F07 A;  1RFE A;  2OU5 A;  3VY5 A;  3VY2 A;  1G78 A;  1WLI A;  3B5M A;  4HMX A;  3DMB A;  1YOA A;  2PTF A;  2QCK A;  3AMF A;  1WLK A;  2ECU A;  2FHQ A;  3DNH A;  5ESC A;  1CI0 A;  1WV4 A;  1G79 A;  1W3R A;  2D38 A;  3NFW A;  3R5W A;  3BPK A;  2HQ7 A;  2RDE A;  1T9M A;  1XXO A;  2HTD A;  1DNL A;  4Y9I A;  1I0S A;  2D36 A;  2D5M A;  2R0X A;  5JAB A; 
#chains in the Genus database with same CATH topology
 2I51 A;  4Z85 A;  1YLN A;  4XHY A;  3VYA A;  2IG6 A;  3ZOD A;  3R5P A;  3K87 A;  2R6V A;  1USF A;  4QVB A;  3HY8 A;  1EJE A;  2FG9 A;  3DB0 A;  4HMT A;  1Y12 A;  3HMZ A;  2L1T A;  2D37 A;  3GAS A;  2GUJ A;  2QEA A;  1W3O A;  2NR4 A;  2AQ6 A;  2X1J A;  1G76 A;  4W64 A;  3KYG A;  3A6Q A;  3HE1 A;  5CHO A;  4UHV A;  1Y30 A;  1FLM A;  4HX6 A;  3ZOG A;  3ZOF A;  1W3Q A;  3R5R A;  1W9A A;  3CB0 A;  3PFT A;  4HMV A;  2IAB A;  1USC A;  3BNK A;  2X1K A;  3ZOH A;  2I02 A;  3FGE A;  4IRA A;  4TV4 A;  5CHE C;  3A6R A;  1AXJ A;  3E4V A;  4YBN A;  4R82 A;  3EC6 A;  2E83 A;  3RH7 A;  3SWJ A;  3R5Z A;  2HHZ A;  1I0R A;  3AWH A;  1JNW A;  3H96 A;  2FUR A;  3R5Y A;  2HQ9 A;  3IN6 A;  5BNC A;  4HMS A;  4HMU A;  2K4Q A;  3U35 A;  3EAA A;  3R5L A;  2HTI A;  1XHN A;  4ZKY A;  3U5W A;  2VPA A;  3KYF A;  4L82 A;  2ECR A;  4N7R C;  3K86 A;  2ED4 A;  3BA3 A;  2Q9K A;  3FKH A;  1RZ1 A;  1W3P A;  3CP3 A;  4HMW A;  1NRG A;  1RZ0 A;  1TY9 A;  1G77 A;  3A20 A;  4YWN A;  3U34 A;  3V4H A;  3ZOE A;  1WGB A;  2A2J A;  4XJ2 A;  2IML A;  3U0I A;  2ASF A;  3F7E A;  3K88 A;  3TGV A;  2ARZ A;  4MTK A;  3ZOC A;  2OL5 A;  2GJG A;  2RE7 A;  1VL7 A;  4F07 A;  1RFE A;  2OU5 A;  3VY5 A;  3VY2 A;  1G78 A;  1WLI A;  3B5M A;  4HMX A;  3DMB A;  1YOA A;  2PTF A;  2P5Z X;  2QCK A;  3AMF A;  1WLK A;  2ECU A;  2FHQ A;  3DNH A;  5ESC A;  1CI0 A;  1WV4 A;  1G79 A;  1W3R A;  2D38 A;  3NFW A;  4HKH A;  3R5W A;  3BPK A;  2HQ7 A;  2RDE A;  1T9M A;  1XXO A;  2HTD A;  1DNL A;  4Y9I A;  1I0S A;  2D36 A;  2D5M A;  2R0X A;  5JAB A; 
#chains in the Genus database with same CATH homology
 2I51 A;  4Z85 A;  1YLN A;  4XHY A;  3VYA A;  2IG6 A;  3ZOD A;  3R5P A;  3K87 A;  2R6V A;  1USF A;  4QVB A;  3HY8 A;  1EJE A;  2FG9 A;  3DB0 A;  4HMT A;  3HMZ A;  2D37 A;  3GAS A;  2QEA A;  1W3O A;  2NR4 A;  2AQ6 A;  2X1J A;  1G76 A;  3KYG A;  3A6Q A;  5CHO A;  1Y30 A;  1FLM A;  4HX6 A;  3ZOG A;  3ZOF A;  1W3Q A;  3R5R A;  1W9A A;  3CB0 A;  3PFT A;  4HMV A;  2IAB A;  1USC A;  3BNK A;  2X1K A;  3ZOH A;  2I02 A;  3FGE A;  4IRA A;  5CHE C;  1AXJ A;  3A6R A;  3E4V A;  4YBN A;  4R82 A;  3EC6 A;  2E83 A;  3RH7 A;  3SWJ A;  3R5Z A;  2HHZ A;  1I0R A;  3AWH A;  1JNW A;  3H96 A;  2FUR A;  3R5Y A;  2HQ9 A;  3IN6 A;  5BNC A;  4HMS A;  4HMU A;  3U35 A;  3R5L A;  2HTI A;  1XHN A;  4ZKY A;  3U5W A;  2VPA A;  3KYF A;  4L82 A;  2ECR A;  4N7R C;  3K86 A;  2ED4 A;  3BA3 A;  2Q9K A;  3FKH A;  1RZ1 A;  1W3P A;  3CP3 A;  4HMW A;  1NRG A;  1RZ0 A;  1TY9 A;  1G77 A;  3A20 A;  4YWN A;  3U34 A;  3ZOE A;  1WGB A;  2A2J A;  4XJ2 A;  2IML A;  3U0I A;  2ASF A;  3F7E A;  3K88 A;  3TGV A;  2ARZ A;  3ZOC A;  2OL5 A;  2GJG A;  2RE7 A;  1VL7 A;  4F07 A;  1RFE A;  2OU5 A;  3VY5 A;  3VY2 A;  1G78 A;  1WLI A;  3B5M A;  4HMX A;  3DMB A;  1YOA A;  2PTF A;  2QCK A;  3AMF A;  1WLK A;  2ECU A;  2FHQ A;  3DNH A;  5ESC A;  1CI0 A;  1WV4 A;  1G79 A;  1W3R A;  2D38 A;  3NFW A;  3R5W A;  3BPK A;  2HQ7 A;  2RDE A;  1T9M A;  1XXO A;  2HTD A;  1DNL A;  4Y9I A;  1I0S A;  2D36 A;  2D5M A;  2R0X A;  5JAB A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1WV4A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations