1WV4 | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	208
structure length	162
Chain Sequence	AHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 162 atoms

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162 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Escherichia coli
publication title	Structure of Escherichia coli pyridoxine 5'-phosphate oxidase in a tetragonal crystal form: insights into the mechanistic pathway of the enzyme. pubmed doi rcsb
molecule keywords	Pyridoxamine 5'-phosphate oxidase
total genus	33
structure length	162
sequence length	208
chains with identical sequence	B
ec nomenclature	ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date	2004-12-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01243	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase
A	PF10590	PNP_phzG_C	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	1wv4A00

4XJ2A 1YOAA 3K87A 3ZOCA 3A6RA 4ZKYA 1JNWA 4HMUA 1FLMA 2QEAA 3VYAA 3ZOFA 3BNKA 1I0RA 3R5WA 2I51A 3AWHA 4Y9IA 5CHOA 2OL5A 2ECRA 4Z85A 2X1JA 2Q9KA 1W3PA 3R5ZA 2HTIA 3IN6A 2HQ7A 1XXOA 3A6QA 1G79A 1RFEA 1W3QA 3K88A 2FURA 1RZ0A 2IABA 1T9MA 1WLKA 2D37A 1W3OA 1WV4A 4F07A 2OU5A 2E83A 3ZODA 2RE7A 1NRGA 1EJEA 5BNCA 1G77A 1USCA 4HMWA 5CHEC 3ZOEA 2I02A 1W3RA 3FKHA 3R5YA 3GASA 2HTDA 3TGVA 1AXJA 3ZOGA 4QVBA 4XHYA 4N7RC 2R6VA 3CP3A 1I0SA 2D36A 2ASFA 2VPAA 3A20A 1WLIA 2PTFA 3KYFA 4IRAA 1XHNA 3B5MA 1Y30A 2FHQA 3HY8A 2R0XA 3CB0A 3DB0A 3E4VA 4L82A 2NR4A 3VY2A 2ARZA 4HMTA 3BA3A 4HX6A 2ED4A 1G76A 3F7EA 4HMXA 4YWNA 2AQ6A 2QCKA 2D5MA 3K86A 1YLNA 2HHZA 1TY9A 3NFWA 3R5PA 3VY5A 3DNHA 3BPKA 1CI0A 4HMVA 3R5RA 3DMBA 3AMFA 4HMSA 2GJGA 3HMZA 4R82A 3PFTA 1USFA 1G78A 3H96A 3ZOHA 3SWJA 3U0IA 3U35A 2IG6A 1VL7A 3U5WA 5JABA 3EC6A 2A2JA 3RH7A 3U34A 2IMLA 4YBNA 5ESCA 3KYGA 3FGEA 2RDEA 2FG9A 1W9AA 1WGBA 2D38A 2HQ9A 2X1KA 1RZ1A 3R5LA 2ECUA 1DNLA
chains in the Genus database with same CATH superfamily

4XJ2A 3EAAA 1YOAA 3K87A 3ZOCA 3A6RA 4ZKYA 1JNWA 4HMUA 1FLMA 2QEAA 3VYAA 3ZOFA 3BNKA 1I0RA 3R5WA 2I51A 3AWHA 4Y9IA 5CHOA 2OL5A 2ECRA 4UHVA 4Z85A 2X1JA 2Q9KA 1W3PA 3R5ZA 2HTIA 3IN6A 2HQ7A 4W64A 1XXOA 3A6QA 1G79A 1RFEA 1W3QA 3K88A 2FURA 1RZ0A 2IABA 1T9MA 1WLKA 1Y12A 2D37A 1W3OA 1WV4A 4F07A 2OU5A 2E83A 3ZODA 2RE7A 1NRGA 1EJEA 3V4HA 5BNCA 1G77A 1USCA 2P5ZX 4HMWA 5CHEC 3ZOEA 2I02A 1W3RA 3FKHA 3R5YA 3GASA 2HTDA 3TGVA 1AXJA 3ZOGA 4QVBA 4XHYA 4N7RC 2R6VA 3CP3A 1I0SA 2D36A 2ASFA 3HE1A 2VPAA 3A20A 2GUJA 1WLIA 2PTFA 3KYFA 4IRAA 1XHNA 3B5MA 1Y30A 2FHQA 3HY8A 4TV4A 2R0XA 3CB0A 3DB0A 3E4VA 4L82A 2NR4A 3VY2A 2K4QA 2ARZA 4HMTA 3BA3A 4HX6A 2ED4A 1G76A 3F7EA 4HMXA 4YWNA 2AQ6A 2QCKA 2D5MA 3K86A 1YLNA 2HHZA 1TY9A 3NFWA 3R5PA 3VY5A 3DNHA 3BPKA 1CI0A 4HMVA 3R5RA 3DMBA 3AMFA 4HMSA 2GJGA 3HMZA 4R82A 3PFTA 1USFA 1G78A 3H96A 3ZOHA 3SWJA 3U0IA 3U35A 2IG6A 1VL7A 3U5WA 5JABA 2L1TA 3EC6A 2A2JA 3RH7A 3U34A 2IMLA 4YBNA 5ESCA 4MTKA 3KYGA 3FGEA 2RDEA 2FG9A 1W9AA 1WGBA 2D38A 2HQ9A 2X1KA 1RZ1A 3R5LA 4HKHA 2ECUA 1DNLA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4XJ2 A;  1YOA A;  3K87 A;  3ZOC A;  3A6R A;  4ZKY A;  1JNW A;  4HMU A;  1FLM A;  2QEA A;  3VYA A;  3ZOF A;  3BNK A;  1I0R A;  3R5W A;  2I51 A;  3AWH A;  4Y9I A;  5CHO A;  2OL5 A;  2ECR A;  4Z85 A;  2X1J A;  2Q9K A;  1W3P A;  3R5Z A;  2HTI A;  3IN6 A;  2HQ7 A;  1XXO A;  3A6Q A;  1G79 A;  1RFE A;  1W3Q A;  3K88 A;  2FUR A;  1RZ0 A;  2IAB A;  1T9M A;  1WLK A;  2D37 A;  1W3O A;  1WV4 A;  4F07 A;  2OU5 A;  2E83 A;  3ZOD A;  2RE7 A;  1NRG A;  1EJE A;  5BNC A;  1G77 A;  1USC A;  4HMW A;  5CHE C;  3ZOE A;  2I02 A;  1W3R A;  3FKH A;  3R5Y A;  3GAS A;  2HTD A;  3TGV A;  1AXJ A;  3ZOG A;  4QVB A;  4XHY A;  4N7R C;  2R6V A;  3CP3 A;  1I0S A;  2D36 A;  2ASF A;  2VPA A;  3A20 A;  1WLI A;  2PTF A;  3KYF A;  4IRA A;  1XHN A;  3B5M A;  1Y30 A;  2FHQ A;  3HY8 A;  2R0X A;  3CB0 A;  3DB0 A;  3E4V A;  4L82 A;  2NR4 A;  3VY2 A;  2ARZ A;  4HMT A;  3BA3 A;  4HX6 A;  2ED4 A;  1G76 A;  3F7E A;  4HMX A;  4YWN A;  2AQ6 A;  2QCK A;  2D5M A;  3K86 A;  1YLN A;  2HHZ A;  1TY9 A;  3NFW A;  3R5P A;  3VY5 A;  3DNH A;  3BPK A;  1CI0 A;  4HMV A;  3R5R A;  3DMB A;  3AMF A;  4HMS A;  2GJG A;  3HMZ A;  4R82 A;  3PFT A;  1USF A;  1G78 A;  3H96 A;  3ZOH A;  3SWJ A;  3U0I A;  3U35 A;  2IG6 A;  1VL7 A;  3U5W A;  5JAB A;  3EC6 A;  2A2J A;  3RH7 A;  3U34 A;  2IML A;  4YBN A;  5ESC A;  3KYG A;  3FGE A;  2RDE A;  2FG9 A;  1W9A A;  1WGB A;  2D38 A;  2HQ9 A;  2X1K A;  1RZ1 A;  3R5L A;  2ECU A;  1DNL A; 
#chains in the Genus database with same CATH topology
 4XJ2 A;  3EAA A;  1YOA A;  3K87 A;  3ZOC A;  3A6R A;  4ZKY A;  1JNW A;  4HMU A;  1FLM A;  2QEA A;  3VYA A;  3ZOF A;  3BNK A;  1I0R A;  3R5W A;  2I51 A;  3AWH A;  4Y9I A;  5CHO A;  2OL5 A;  2ECR A;  4UHV A;  4Z85 A;  2X1J A;  2Q9K A;  1W3P A;  3R5Z A;  2HTI A;  3IN6 A;  2HQ7 A;  4W64 A;  1XXO A;  3A6Q A;  1G79 A;  1RFE A;  1W3Q A;  3K88 A;  2FUR A;  1RZ0 A;  2IAB A;  1T9M A;  1WLK A;  1Y12 A;  2D37 A;  1W3O A;  1WV4 A;  4F07 A;  2OU5 A;  2E83 A;  3ZOD A;  2RE7 A;  1NRG A;  1EJE A;  3V4H A;  5BNC A;  1G77 A;  1USC A;  2P5Z X;  4HMW A;  5CHE C;  3ZOE A;  2I02 A;  1W3R A;  3FKH A;  3R5Y A;  3GAS A;  2HTD A;  3TGV A;  1AXJ A;  3ZOG A;  4QVB A;  4XHY A;  4N7R C;  2R6V A;  3CP3 A;  1I0S A;  2D36 A;  2ASF A;  3HE1 A;  2VPA A;  3A20 A;  2GUJ A;  1WLI A;  2PTF A;  3KYF A;  4IRA A;  1XHN A;  3B5M A;  1Y30 A;  2FHQ A;  3HY8 A;  4TV4 A;  2R0X A;  3CB0 A;  3DB0 A;  3E4V A;  4L82 A;  2NR4 A;  3VY2 A;  2K4Q A;  2ARZ A;  4HMT A;  3BA3 A;  4HX6 A;  2ED4 A;  1G76 A;  3F7E A;  4HMX A;  4YWN A;  2AQ6 A;  2QCK A;  2D5M A;  3K86 A;  1YLN A;  2HHZ A;  1TY9 A;  3NFW A;  3R5P A;  3VY5 A;  3DNH A;  3BPK A;  1CI0 A;  4HMV A;  3R5R A;  3DMB A;  3AMF A;  4HMS A;  2GJG A;  3HMZ A;  4R82 A;  3PFT A;  1USF A;  1G78 A;  3H96 A;  3ZOH A;  3SWJ A;  3U0I A;  3U35 A;  2IG6 A;  1VL7 A;  3U5W A;  5JAB A;  2L1T A;  3EC6 A;  2A2J A;  3RH7 A;  3U34 A;  2IML A;  4YBN A;  5ESC A;  4MTK A;  3KYG A;  3FGE A;  2RDE A;  2FG9 A;  1W9A A;  1WGB A;  2D38 A;  2HQ9 A;  2X1K A;  1RZ1 A;  3R5L A;  4HKH A;  2ECU A;  1DNL A; 
#chains in the Genus database with same CATH homology
 4XJ2 A;  1YOA A;  3K87 A;  3ZOC A;  3A6R A;  4ZKY A;  1JNW A;  4HMU A;  1FLM A;  2QEA A;  3VYA A;  3ZOF A;  3BNK A;  1I0R A;  3R5W A;  2I51 A;  3AWH A;  4Y9I A;  5CHO A;  2OL5 A;  2ECR A;  4Z85 A;  2X1J A;  2Q9K A;  1W3P A;  3R5Z A;  2HTI A;  3IN6 A;  2HQ7 A;  1XXO A;  3A6Q A;  1G79 A;  1RFE A;  1W3Q A;  3K88 A;  2FUR A;  1RZ0 A;  2IAB A;  1T9M A;  1WLK A;  2D37 A;  1W3O A;  1WV4 A;  4F07 A;  2OU5 A;  2E83 A;  3ZOD A;  2RE7 A;  1NRG A;  1EJE A;  5BNC A;  1G77 A;  1USC A;  4HMW A;  5CHE C;  3ZOE A;  2I02 A;  1W3R A;  3FKH A;  3R5Y A;  3GAS A;  2HTD A;  3TGV A;  1AXJ A;  3ZOG A;  4QVB A;  4XHY A;  4N7R C;  2R6V A;  3CP3 A;  1I0S A;  2D36 A;  2ASF A;  2VPA A;  3A20 A;  1WLI A;  2PTF A;  3KYF A;  4IRA A;  1XHN A;  3B5M A;  1Y30 A;  2FHQ A;  3HY8 A;  2R0X A;  3CB0 A;  3DB0 A;  3E4V A;  4L82 A;  2NR4 A;  3VY2 A;  2ARZ A;  4HMT A;  3BA3 A;  4HX6 A;  2ED4 A;  1G76 A;  3F7E A;  4HMX A;  4YWN A;  2AQ6 A;  2QCK A;  2D5M A;  3K86 A;  1YLN A;  2HHZ A;  1TY9 A;  3NFW A;  3R5P A;  3VY5 A;  3DNH A;  3BPK A;  1CI0 A;  4HMV A;  3R5R A;  3DMB A;  3AMF A;  4HMS A;  2GJG A;  3HMZ A;  4R82 A;  3PFT A;  1USF A;  1G78 A;  3H96 A;  3ZOH A;  3SWJ A;  3U0I A;  3U35 A;  2IG6 A;  1VL7 A;  3U5W A;  5JAB A;  3EC6 A;  2A2J A;  3RH7 A;  3U34 A;  2IML A;  4YBN A;  5ESC A;  3KYG A;  3FGE A;  2RDE A;  2FG9 A;  1W9A A;  1WGB A;  2D38 A;  2HQ9 A;  2X1K A;  1RZ1 A;  3R5L A;  2ECU A;  1DNL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1WV4A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations