1WV4 | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	208
structure length	162
Chain Sequence	AHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 162 atoms

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162 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure of Escherichia coli pyridoxine 5'-phosphate oxidase in a tetragonal crystal form: insights into the mechanistic pathway of the enzyme. pubmed doi rcsb
molecule keywords	Pyridoxamine 5'-phosphate oxidase
molecule tags	Oxidoreductase
source organism	Escherichia coli
total genus	33
structure length	162
sequence length	208
chains with identical sequence	B
ec nomenclature	ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date	2004-12-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01243	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase
A	PF10590	PNP_phzG_C	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	1wv4A00

3DB0A 2HHZA 2HTDA 1W9AA 3R5PA 3ZOHA 3EC6A 1DNLA 3KYFA 4R82A 1JNWA 2E83A 2OL5A 2X1JA 3VYAA 5BNCA 2FURA 2NR4A 3B5MA 3AWHA 4Y9IA 1EJEA 3CB0A 3E4VA 4HMUA 3ZOCA 3R5WA 3A6RA 3R5ZA 5CHOA 3K87A 1XHNA 3GASA 2FG9A 2IMLA 3ZOFA 2D37A 1I0SA 3ZODA 2I51A 1Y30A 3RH7A 1G78A 3R5YA 1WLKA 2PTFA 3VY2A 3U35A 1AXJA 3ZOGA 2RDEA 2AQ6A 3A20A 3R5LA 2Q9KA 1USCA 4N7RC 1W3QA 3ZOEA 2R0XA 2HQ9A 3KYGA 5JABA 3H96A 2QEAA 1CI0A 1RFEA 3BA3A 2RE7A 1TY9A 1YLNA 2QCKA 3CP3A 3U0IA 2GJGA 2IG6A 4XHYA 3SWJA 2VPAA 3AMFA 3PFTA 2IABA 2X1KA 4ZKYA 1WGBA 4F07A 3DMBA 1NRGA 4L82A 3FKHA 2ARZA 1T9MA 2ED4A 5ESCA 1USFA 2ECRA 2D36A 1G77A 3K88A 1XXOA 2FHQA 1W3RA 3U5WA 4HX6A 4QVBA 3R5RA 2I02A 2OU5A 1G76A 4HMVA 3HY8A 3U34A 1G79A 3A6QA 3NFWA 3BPKA 1FLMA 4HMXA 1I0RA 2ECUA 2ASFA 2R6VA 3FGEA 1WLIA 1YOAA 1W3PA 4IRAA 1RZ0A 4XJ2A 5CHEC 2D38A 4Z85A 2HTIA 2D5MA 3DNHA 3K86A 3F7EA 1VL7A 2HQ7A 3BNKA 1RZ1A 3VY5A 4YBNA 3HMZA 3TGVA 1W3OA 4HMWA 2A2JA 4HMTA 4HMSA 3IN6A 4YWNA 1WV4A
chains in the Genus database with same CATH superfamily

3HE1A 3DB0A 2HHZA 2HTDA 1W9AA 3R5PA 3ZOHA 3EC6A 1DNLA 3EAAA 3KYFA 4R82A 1JNWA 2L1TA 2E83A 2OL5A 2X1JA 3VYAA 5BNCA 2FURA 2NR4A 3B5MA 3AWHA 4Y9IA 1EJEA 3CB0A 3E4VA 1Y12A 4HMUA 3R5WA 3ZOCA 4UHVA 3A6RA 3R5ZA 5CHOA 3K87A 1XHNA 3GASA 2FG9A 2IMLA 3ZOFA 2D37A 1I0SA 3ZODA 2I51A 1Y30A 3RH7A 1G78A 3R5YA 2P5ZX 1WLKA 2PTFA 4HKHA 3VY2A 3U35A 1AXJA 3ZOGA 2RDEA 2AQ6A 3A20A 3R5LA 2Q9KA 1USCA 4N7RC 1W3QA 3ZOEA 2R0XA 3V4HA 2HQ9A 3KYGA 5JABA 3H96A 2QEAA 1CI0A 1RFEA 3BA3A 2RE7A 1TY9A 1YLNA 2QCKA 3CP3A 3U0IA 2GJGA 2IG6A 4XHYA 3SWJA 2VPAA 3AMFA 3PFTA 2IABA 2X1KA 4ZKYA 4W64A 1WGBA 4F07A 3DMBA 1NRGA 4L82A 3FKHA 2ARZA 1T9MA 2K4QA 2ED4A 5ESCA 1USFA 2ECRA 2D36A 1G77A 3K88A 1XXOA 2FHQA 1W3RA 3U5WA 4HX6A 4QVBA 3R5RA 2I02A 2OU5A 1G76A 4HMVA 3HY8A 3U34A 1G79A 3A6QA 3NFWA 3BPKA 1FLMA 4HMXA 1I0RA 2ECUA 2ASFA 4MTKA 2R6VA 3FGEA 1WLIA 1YOAA 1W3PA 4IRAA 1RZ0A 4XJ2A 5CHEC 2D38A 4Z85A 2HTIA 2D5MA 3DNHA 3K86A 3F7EA 1VL7A 2HQ7A 4TV4A 3BNKA 1RZ1A 3VY5A 4YBNA 3HMZA 3TGVA 2GUJA 1W3OA 4HMWA 2A2JA 4HMTA 4HMSA 3IN6A 4YWNA 1WV4A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3DB0 A;  2HHZ A;  2HTD A;  1W9A A;  3R5P A;  3ZOH A;  3EC6 A;  1DNL A;  3KYF A;  4R82 A;  1JNW A;  2E83 A;  2OL5 A;  2X1J A;  3VYA A;  5BNC A;  2FUR A;  2NR4 A;  3B5M A;  3AWH A;  4Y9I A;  1EJE A;  3CB0 A;  3E4V A;  4HMU A;  3ZOC A;  3R5W A;  3A6R A;  3R5Z A;  5CHO A;  3K87 A;  1XHN A;  3GAS A;  2FG9 A;  2IML A;  3ZOF A;  2D37 A;  1I0S A;  3ZOD A;  2I51 A;  1Y30 A;  3RH7 A;  1G78 A;  3R5Y A;  1WLK A;  2PTF A;  3VY2 A;  3U35 A;  1AXJ A;  3ZOG A;  2RDE A;  2AQ6 A;  3A20 A;  3R5L A;  2Q9K A;  1USC A;  4N7R C;  1W3Q A;  3ZOE A;  2R0X A;  2HQ9 A;  3KYG A;  5JAB A;  3H96 A;  2QEA A;  1CI0 A;  1RFE A;  3BA3 A;  2RE7 A;  1TY9 A;  1YLN A;  2QCK A;  3CP3 A;  3U0I A;  2GJG A;  2IG6 A;  4XHY A;  3SWJ A;  2VPA A;  3AMF A;  3PFT A;  2IAB A;  2X1K A;  4ZKY A;  1WGB A;  4F07 A;  3DMB A;  1NRG A;  4L82 A;  3FKH A;  2ARZ A;  1T9M A;  2ED4 A;  5ESC A;  1USF A;  2ECR A;  2D36 A;  1G77 A;  3K88 A;  1XXO A;  2FHQ A;  1W3R A;  3U5W A;  4HX6 A;  4QVB A;  3R5R A;  2I02 A;  2OU5 A;  1G76 A;  4HMV A;  3HY8 A;  3U34 A;  1G79 A;  3A6Q A;  3NFW A;  3BPK A;  1FLM A;  4HMX A;  1I0R A;  2ECU A;  2ASF A;  2R6V A;  3FGE A;  1WLI A;  1YOA A;  1W3P A;  4IRA A;  1RZ0 A;  4XJ2 A;  5CHE C;  2D38 A;  4Z85 A;  2HTI A;  2D5M A;  3DNH A;  3K86 A;  3F7E A;  1VL7 A;  2HQ7 A;  3BNK A;  1RZ1 A;  3VY5 A;  4YBN A;  3HMZ A;  3TGV A;  1W3O A;  4HMW A;  2A2J A;  4HMT A;  4HMS A;  3IN6 A;  4YWN A;  1WV4 A; 
#chains in the Genus database with same CATH topology
 3HE1 A;  3DB0 A;  2HHZ A;  2HTD A;  1W9A A;  3R5P A;  3ZOH A;  3EC6 A;  1DNL A;  3EAA A;  3KYF A;  4R82 A;  1JNW A;  2L1T A;  2E83 A;  2OL5 A;  2X1J A;  3VYA A;  5BNC A;  2FUR A;  2NR4 A;  3B5M A;  3AWH A;  4Y9I A;  1EJE A;  3CB0 A;  3E4V A;  1Y12 A;  4HMU A;  3R5W A;  3ZOC A;  4UHV A;  3A6R A;  3R5Z A;  5CHO A;  3K87 A;  1XHN A;  3GAS A;  2FG9 A;  2IML A;  3ZOF A;  2D37 A;  1I0S A;  3ZOD A;  2I51 A;  1Y30 A;  3RH7 A;  1G78 A;  3R5Y A;  2P5Z X;  1WLK A;  2PTF A;  4HKH A;  3VY2 A;  3U35 A;  1AXJ A;  3ZOG A;  2RDE A;  2AQ6 A;  3A20 A;  3R5L A;  2Q9K A;  1USC A;  4N7R C;  1W3Q A;  3ZOE A;  2R0X A;  3V4H A;  2HQ9 A;  3KYG A;  5JAB A;  3H96 A;  2QEA A;  1CI0 A;  1RFE A;  3BA3 A;  2RE7 A;  1TY9 A;  1YLN A;  2QCK A;  3CP3 A;  3U0I A;  2GJG A;  2IG6 A;  4XHY A;  3SWJ A;  2VPA A;  3AMF A;  3PFT A;  2IAB A;  2X1K A;  4ZKY A;  4W64 A;  1WGB A;  4F07 A;  3DMB A;  1NRG A;  4L82 A;  3FKH A;  2ARZ A;  1T9M A;  2K4Q A;  2ED4 A;  5ESC A;  1USF A;  2ECR A;  2D36 A;  1G77 A;  3K88 A;  1XXO A;  2FHQ A;  1W3R A;  3U5W A;  4HX6 A;  4QVB A;  3R5R A;  2I02 A;  2OU5 A;  1G76 A;  4HMV A;  3HY8 A;  3U34 A;  1G79 A;  3A6Q A;  3NFW A;  3BPK A;  1FLM A;  4HMX A;  1I0R A;  2ECU A;  2ASF A;  4MTK A;  2R6V A;  3FGE A;  1WLI A;  1YOA A;  1W3P A;  4IRA A;  1RZ0 A;  4XJ2 A;  5CHE C;  2D38 A;  4Z85 A;  2HTI A;  2D5M A;  3DNH A;  3K86 A;  3F7E A;  1VL7 A;  2HQ7 A;  4TV4 A;  3BNK A;  1RZ1 A;  3VY5 A;  4YBN A;  3HMZ A;  3TGV A;  2GUJ A;  1W3O A;  4HMW A;  2A2J A;  4HMT A;  4HMS A;  3IN6 A;  4YWN A;  1WV4 A; 
#chains in the Genus database with same CATH homology
 3DB0 A;  2HHZ A;  2HTD A;  1W9A A;  3R5P A;  3ZOH A;  3EC6 A;  1DNL A;  3KYF A;  4R82 A;  1JNW A;  2E83 A;  2OL5 A;  2X1J A;  3VYA A;  5BNC A;  2FUR A;  2NR4 A;  3B5M A;  3AWH A;  4Y9I A;  1EJE A;  3CB0 A;  3E4V A;  4HMU A;  3ZOC A;  3R5W A;  3A6R A;  3R5Z A;  5CHO A;  3K87 A;  1XHN A;  3GAS A;  2FG9 A;  2IML A;  3ZOF A;  2D37 A;  1I0S A;  3ZOD A;  2I51 A;  1Y30 A;  3RH7 A;  1G78 A;  3R5Y A;  1WLK A;  2PTF A;  3VY2 A;  3U35 A;  1AXJ A;  3ZOG A;  2RDE A;  2AQ6 A;  3A20 A;  3R5L A;  2Q9K A;  1USC A;  4N7R C;  1W3Q A;  3ZOE A;  2R0X A;  2HQ9 A;  3KYG A;  5JAB A;  3H96 A;  2QEA A;  1CI0 A;  1RFE A;  3BA3 A;  2RE7 A;  1TY9 A;  1YLN A;  2QCK A;  3CP3 A;  3U0I A;  2GJG A;  2IG6 A;  4XHY A;  3SWJ A;  2VPA A;  3AMF A;  3PFT A;  2IAB A;  2X1K A;  4ZKY A;  1WGB A;  4F07 A;  3DMB A;  1NRG A;  4L82 A;  3FKH A;  2ARZ A;  1T9M A;  2ED4 A;  5ESC A;  1USF A;  2ECR A;  2D36 A;  1G77 A;  3K88 A;  1XXO A;  2FHQ A;  1W3R A;  3U5W A;  4HX6 A;  4QVB A;  3R5R A;  2I02 A;  2OU5 A;  1G76 A;  4HMV A;  3HY8 A;  3U34 A;  1G79 A;  3A6Q A;  3NFW A;  3BPK A;  1FLM A;  4HMX A;  1I0R A;  2ECU A;  2ASF A;  2R6V A;  3FGE A;  1WLI A;  1YOA A;  1W3P A;  4IRA A;  1RZ0 A;  4XJ2 A;  5CHE C;  2D38 A;  4Z85 A;  2HTI A;  2D5M A;  3DNH A;  3K86 A;  3F7E A;  1VL7 A;  2HQ7 A;  3BNK A;  1RZ1 A;  3VY5 A;  4YBN A;  3HMZ A;  3TGV A;  1W3O A;  4HMW A;  2A2J A;  4HMT A;  4HMS A;  3IN6 A;  4YWN A;  1WV4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1WV4A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations