2A2JA

Crystal structure of a putative pyridoxine 5'-phosphate oxidase (rv2607) from mycobacterium tuberculosis
Total Genus 56
2040608010012014016018020001020304050
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
203
structure length
202
Chain Sequence
PEKDGGDLDFDWLDDGWLTLLRRWLNDAQRAGVSEPNAMVLATVADGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSRAQLDNQLAEVTRRFADQDQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRIRVANGRLERLQPGS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI5 (93-96)TI1 (25-28)3H1 (34-37)TI2 (37-40)S3 (87-93)AH1 (41-55)TI4 (84-87)S1 (62-69)TIV2 (68-71)S2 (72-84)AH5 (162-176)AH2 (97-104)O1 (105-107)S4 (107-114)S5 (119-129)TIV3 (154-157)AH4 (144-152)TIV5 (185-188)TI6 (176-179)TIV4 (179-182)S6 (188-193)TVIII1 (195-198)S7 (197-202)TIV1 (57-60)3H2 (115-117)AH3 (132-141)Updating...
connected with : NaN
publication title Crystal structure of a putative pyridoxine 5'-phosphate oxidase (Rv2607) from Mycobacterium tuberculosis.
pubmed doi rcsb
molecule keywords Pyridoxamine 5'-phosphate oxidase
molecule tags Oxidoreductase
source organism Mycobacterium tuberculosis
total genus 56
structure length 202
sequence length 203
chains with identical sequence B
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2005-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2a2jA00
1G77A 4HX6A 3R5ZA 2AQ6A 3FKHA 3R5WA 1CI0A 3AMFA 3ZOCA 3DMBA 4N7RC 1WLKA 2RDEA 3B5MA 2E83A 1RZ0A 2R6VA 2ED4A 3AWHA 4HMWA 4XJ2A 1RZ1A 1FLMA 3TGVA 3K88A 1XHNA 4L82A 4HMTA 2Q9KA 2FURA 1RFEA 2OL5A 4Y9IA 2D5MA 3ZOFA 2IABA 3KYFA 2ARZA 4YWNA 1USCA 2ECUA 1G78A 2HTIA 2FHQA 2NR4A 2OU5A 3U35A 1W3OA 3R5YA 3ZOGA 2HTDA 3F7EA 4Z85A 3A6QA 3BA3A 2D38A 3KYGA 1W3RA 1YOAA 1XXOA 1WV4A 3BPKA 2VPAA 2QCKA 4ZKYA 2QEAA 1VL7A 3VY5A 3U5WA 5CHEC 3NFWA 3ZOEA 2X1JA 3ZOHA 3A6RA 3GASA 2PTFA 3CP3A 4IRAA 1YLNA 3K86A 1W3PA 2HHZA 2I02A 3FGEA 4HMSA 1I0SA 1NRGA 3R5LA 3SWJA 3VY2A 3U34A 1USFA 5CHOA 1DNLA 2RE7A 3PFTA 4HMXA 1W9AA 2A2JA 4HMVA 1WGBA 1T9MA 2HQ9A 1AXJA 2ASFA 3DNHA 1I0RA 3K87A 3R5RA 4YBNA 5JABA 4XHYA 3HMZA 5BNCA 3U0IA 1JNWA 1WLIA 4QVBA 4R82A 3HY8A 2IG6A 2D36A 3CB0A 1TY9A 3RH7A 2X1KA 3EC6A 5ESCA 1W3QA 2GJGA 3E4VA 3H96A 3ZODA 4F07A 2I51A 2FG9A 2D37A 4HMUA 2IMLA 2R0XA 3VYAA 2HQ7A 1G79A 1Y30A 3DB0A 1G76A 3IN6A 3R5PA 3A20A 1EJEA 2ECRA 3BNKA
chains in the Genus database with same CATH superfamily
1G77A 4HX6A 3V4HA 3R5ZA 2AQ6A 3FKHA 2K4QA 3R5WA 1CI0A 3AMFA 3ZOCA 3DMBA 4N7RC 1WLKA 2RDEA 3B5MA 2E83A 1RZ0A 2R6VA 2ED4A 3AWHA 4HMWA 4XJ2A 1RZ1A 1FLMA 3TGVA 3K88A 1XHNA 4L82A 4HMTA 2Q9KA 2FURA 1RFEA 2OL5A 4Y9IA 2D5MA 3ZOFA 2IABA 3KYFA 2ARZA 4YWNA 1USCA 2ECUA 1G78A 2HTIA 2FHQA 2NR4A 2OU5A 3U35A 1W3OA 3R5YA 3ZOGA 2HTDA 3F7EA 4Z85A 3A6QA 3BA3A 2D38A 3KYGA 1W3RA 1YOAA 1XXOA 1WV4A 3BPKA 2VPAA 2QCKA 4ZKYA 2QEAA 4HKHA 1VL7A 3VY5A 3U5WA 5CHEC 3NFWA 3ZOEA 2X1JA 3ZOHA 3A6RA 3GASA 2PTFA 3CP3A 4IRAA 1YLNA 3K86A 1W3PA 2HHZA 2GUJA 2I02A 3HE1A 3FGEA 4MTKA 4HMSA 3EAAA 1I0SA 1NRGA 3R5LA 3SWJA 1Y12A 3VY2A 3U34A 1USFA 5CHOA 1DNLA 2RE7A 2L1TA 3PFTA 4HMXA 1W9AA 2A2JA 4HMVA 1WGBA 1T9MA 2HQ9A 1AXJA 2ASFA 3DNHA 1I0RA 3K87A 3R5RA 4YBNA 5JABA 4XHYA 3HMZA 5BNCA 3U0IA 1JNWA 1WLIA 4QVBA 4R82A 3HY8A 2IG6A 2D36A 3CB0A 1TY9A 3RH7A 2X1KA 3EC6A 5ESCA 1W3QA 2GJGA 3E4VA 3H96A 3ZODA 4F07A 2I51A 2FG9A 2P5ZX 2D37A 4HMUA 2IMLA 2R0XA 3VYAA 2HQ7A 1G79A 1Y30A 4TV4A 4W64A 3DB0A 1G76A 3IN6A 3R5PA 3A20A 1EJEA 4UHVA 2ECRA 3BNKA
chains in the Genus database with same CATH topology
1G77A 4HX6A 3R5ZA 2AQ6A 3FKHA 3R5WA 1CI0A 3AMFA 3ZOCA 3DMBA 4N7RC 1WLKA 2RDEA 3B5MA 2E83A 1RZ0A 2R6VA 2ED4A 3AWHA 4HMWA 4XJ2A 1RZ1A 1FLMA 3TGVA 3K88A 1XHNA 4L82A 4HMTA 2Q9KA 2FURA 1RFEA 2OL5A 4Y9IA 2D5MA 3ZOFA 2IABA 3KYFA 2ARZA 4YWNA 1USCA 2ECUA 1G78A 2HTIA 2FHQA 2NR4A 2OU5A 3U35A 1W3OA 3R5YA 3ZOGA 2HTDA 3F7EA 4Z85A 3A6QA 3BA3A 2D38A 3KYGA 1W3RA 1YOAA 1XXOA 1WV4A 3BPKA 2VPAA 2QCKA 4ZKYA 2QEAA 1VL7A 3VY5A 3U5WA 5CHEC 3NFWA 3ZOEA 2X1JA 3ZOHA 3A6RA 3GASA 2PTFA 3CP3A 4IRAA 1YLNA 3K86A 1W3PA 2HHZA 2I02A 3FGEA 4HMSA 1I0SA 1NRGA 3R5LA 3SWJA 3VY2A 3U34A 1USFA 5CHOA 1DNLA 2RE7A 3PFTA 4HMXA 1W9AA 2A2JA 4HMVA 1WGBA 1T9MA 2HQ9A 1AXJA 2ASFA 3DNHA 1I0RA 3K87A 3R5RA 4YBNA 5JABA 4XHYA 3HMZA 5BNCA 3U0IA 1JNWA 1WLIA 4QVBA 4R82A 3HY8A 2IG6A 2D36A 3CB0A 1TY9A 3RH7A 2X1KA 3EC6A 5ESCA 1W3QA 2GJGA 3E4VA 3H96A 3ZODA 4F07A 2I51A 2FG9A 2D37A 4HMUA 2IMLA 2R0XA 3VYAA 2HQ7A 1G79A 1Y30A 3DB0A 1G76A 3IN6A 3R5PA 3A20A 1EJEA 2ECRA 3BNKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G77 A;  4HX6 A;  3R5Z A;  2AQ6 A;  3FKH A;  3R5W A;  1CI0 A;  3AMF A;  3ZOC A;  3DMB A;  4N7R C;  1WLK A;  2RDE A;  3B5M A;  2E83 A;  1RZ0 A;  2R6V A;  2ED4 A;  3AWH A;  4HMW A;  4XJ2 A;  1RZ1 A;  1FLM A;  3TGV A;  3K88 A;  1XHN A;  4L82 A;  4HMT A;  2Q9K A;  2FUR A;  1RFE A;  2OL5 A;  4Y9I A;  2D5M A;  3ZOF A;  2IAB A;  3KYF A;  2ARZ A;  4YWN A;  1USC A;  2ECU A;  1G78 A;  2HTI A;  2FHQ A;  2NR4 A;  2OU5 A;  3U35 A;  1W3O A;  3R5Y A;  3ZOG A;  2HTD A;  3F7E A;  4Z85 A;  3A6Q A;  3BA3 A;  2D38 A;  3KYG A;  1W3R A;  1YOA A;  1XXO A;  1WV4 A;  3BPK A;  2VPA A;  2QCK A;  4ZKY A;  2QEA A;  1VL7 A;  3VY5 A;  3U5W A;  5CHE C;  3NFW A;  3ZOE A;  2X1J A;  3ZOH A;  3A6R A;  3GAS A;  2PTF A;  3CP3 A;  4IRA A;  1YLN A;  3K86 A;  1W3P A;  2HHZ A;  2I02 A;  3FGE A;  4HMS A;  1I0S A;  1NRG A;  3R5L A;  3SWJ A;  3VY2 A;  3U34 A;  1USF A;  5CHO A;  1DNL A;  2RE7 A;  3PFT A;  4HMX A;  1W9A A;  2A2J A;  4HMV A;  1WGB A;  1T9M A;  2HQ9 A;  1AXJ A;  2ASF A;  3DNH A;  1I0R A;  3K87 A;  3R5R A;  4YBN A;  5JAB A;  4XHY A;  3HMZ A;  5BNC A;  3U0I A;  1JNW A;  1WLI A;  4QVB A;  4R82 A;  3HY8 A;  2IG6 A;  2D36 A;  3CB0 A;  1TY9 A;  3RH7 A;  2X1K A;  3EC6 A;  5ESC A;  1W3Q A;  2GJG A;  3E4V A;  3H96 A;  3ZOD A;  4F07 A;  2I51 A;  2FG9 A;  2D37 A;  4HMU A;  2IML A;  2R0X A;  3VYA A;  2HQ7 A;  1G79 A;  1Y30 A;  3DB0 A;  1G76 A;  3IN6 A;  3R5P A;  3A20 A;  1EJE A;  2ECR A;  3BNK A; 
#chains in the Genus database with same CATH topology
 1G77 A;  4HX6 A;  3V4H A;  3R5Z A;  2AQ6 A;  3FKH A;  2K4Q A;  3R5W A;  1CI0 A;  3AMF A;  3ZOC A;  3DMB A;  4N7R C;  1WLK A;  2RDE A;  3B5M A;  2E83 A;  1RZ0 A;  2R6V A;  2ED4 A;  3AWH A;  4HMW A;  4XJ2 A;  1RZ1 A;  1FLM A;  3TGV A;  3K88 A;  1XHN A;  4L82 A;  4HMT A;  2Q9K A;  2FUR A;  1RFE A;  2OL5 A;  4Y9I A;  2D5M A;  3ZOF A;  2IAB A;  3KYF A;  2ARZ A;  4YWN A;  1USC A;  2ECU A;  1G78 A;  2HTI A;  2FHQ A;  2NR4 A;  2OU5 A;  3U35 A;  1W3O A;  3R5Y A;  3ZOG A;  2HTD A;  3F7E A;  4Z85 A;  3A6Q A;  3BA3 A;  2D38 A;  3KYG A;  1W3R A;  1YOA A;  1XXO A;  1WV4 A;  3BPK A;  2VPA A;  2QCK A;  4ZKY A;  2QEA A;  4HKH A;  1VL7 A;  3VY5 A;  3U5W A;  5CHE C;  3NFW A;  3ZOE A;  2X1J A;  3ZOH A;  3A6R A;  3GAS A;  2PTF A;  3CP3 A;  4IRA A;  1YLN A;  3K86 A;  1W3P A;  2HHZ A;  2GUJ A;  2I02 A;  3HE1 A;  3FGE A;  4MTK A;  4HMS A;  3EAA A;  1I0S A;  1NRG A;  3R5L A;  3SWJ A;  1Y12 A;  3VY2 A;  3U34 A;  1USF A;  5CHO A;  1DNL A;  2RE7 A;  2L1T A;  3PFT A;  4HMX A;  1W9A A;  2A2J A;  4HMV A;  1WGB A;  1T9M A;  2HQ9 A;  1AXJ A;  2ASF A;  3DNH A;  1I0R A;  3K87 A;  3R5R A;  4YBN A;  5JAB A;  4XHY A;  3HMZ A;  5BNC A;  3U0I A;  1JNW A;  1WLI A;  4QVB A;  4R82 A;  3HY8 A;  2IG6 A;  2D36 A;  3CB0 A;  1TY9 A;  3RH7 A;  2X1K A;  3EC6 A;  5ESC A;  1W3Q A;  2GJG A;  3E4V A;  3H96 A;  3ZOD A;  4F07 A;  2I51 A;  2FG9 A;  2P5Z X;  2D37 A;  4HMU A;  2IML A;  2R0X A;  3VYA A;  2HQ7 A;  1G79 A;  1Y30 A;  4TV4 A;  4W64 A;  3DB0 A;  1G76 A;  3IN6 A;  3R5P A;  3A20 A;  1EJE A;  4UHV A;  2ECR A;  3BNK A; 
#chains in the Genus database with same CATH homology
 1G77 A;  4HX6 A;  3R5Z A;  2AQ6 A;  3FKH A;  3R5W A;  1CI0 A;  3AMF A;  3ZOC A;  3DMB A;  4N7R C;  1WLK A;  2RDE A;  3B5M A;  2E83 A;  1RZ0 A;  2R6V A;  2ED4 A;  3AWH A;  4HMW A;  4XJ2 A;  1RZ1 A;  1FLM A;  3TGV A;  3K88 A;  1XHN A;  4L82 A;  4HMT A;  2Q9K A;  2FUR A;  1RFE A;  2OL5 A;  4Y9I A;  2D5M A;  3ZOF A;  2IAB A;  3KYF A;  2ARZ A;  4YWN A;  1USC A;  2ECU A;  1G78 A;  2HTI A;  2FHQ A;  2NR4 A;  2OU5 A;  3U35 A;  1W3O A;  3R5Y A;  3ZOG A;  2HTD A;  3F7E A;  4Z85 A;  3A6Q A;  3BA3 A;  2D38 A;  3KYG A;  1W3R A;  1YOA A;  1XXO A;  1WV4 A;  3BPK A;  2VPA A;  2QCK A;  4ZKY A;  2QEA A;  1VL7 A;  3VY5 A;  3U5W A;  5CHE C;  3NFW A;  3ZOE A;  2X1J A;  3ZOH A;  3A6R A;  3GAS A;  2PTF A;  3CP3 A;  4IRA A;  1YLN A;  3K86 A;  1W3P A;  2HHZ A;  2I02 A;  3FGE A;  4HMS A;  1I0S A;  1NRG A;  3R5L A;  3SWJ A;  3VY2 A;  3U34 A;  1USF A;  5CHO A;  1DNL A;  2RE7 A;  3PFT A;  4HMX A;  1W9A A;  2A2J A;  4HMV A;  1WGB A;  1T9M A;  2HQ9 A;  1AXJ A;  2ASF A;  3DNH A;  1I0R A;  3K87 A;  3R5R A;  4YBN A;  5JAB A;  4XHY A;  3HMZ A;  5BNC A;  3U0I A;  1JNW A;  1WLI A;  4QVB A;  4R82 A;  3HY8 A;  2IG6 A;  2D36 A;  3CB0 A;  1TY9 A;  3RH7 A;  2X1K A;  3EC6 A;  5ESC A;  1W3Q A;  2GJG A;  3E4V A;  3H96 A;  3ZOD A;  4F07 A;  2I51 A;  2FG9 A;  2D37 A;  4HMU A;  2IML A;  2R0X A;  3VYA A;  2HQ7 A;  1G79 A;  1Y30 A;  3DB0 A;  1G76 A;  3IN6 A;  3R5P A;  3A20 A;  1EJE A;  2ECR A;  3BNK A; 
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