2A2JA

Crystal structure of a putative pyridoxine 5'-phosphate oxidase (rv2607) from mycobacterium tuberculosis
Total Genus 56
2040608010012014016018020001020304050
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
203
structure length
202
Chain Sequence
PEKDGGDLDFDWLDDGWLTLLRRWLNDAQRAGVSEPNAMVLATVADGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSRAQLDNQLAEVTRRFADQDQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRIRVANGRLERLQPGS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI5 (93-96)TI1 (25-28)3H1 (34-37)TI2 (37-40)S3 (87-93)AH1 (41-55)TI4 (84-87)S1 (62-69)TIV2 (68-71)S2 (72-84)AH5 (162-176)AH2 (97-104)O1 (105-107)S4 (107-114)S5 (119-129)TIV3 (154-157)AH4 (144-152)TIV5 (185-188)TI6 (176-179)TIV4 (179-182)S6 (188-193)TVIII1 (195-198)S7 (197-202)TIV1 (57-60)3H2 (115-117)AH3 (132-141)Updating...
connected with : NaN
publication title Crystal structure of a putative pyridoxine 5'-phosphate oxidase (Rv2607) from Mycobacterium tuberculosis.
pubmed doi rcsb
molecule keywords Pyridoxamine 5'-phosphate oxidase
molecule tags Oxidoreductase
source organism Mycobacterium tuberculosis
total genus 56
structure length 202
sequence length 203
chains with identical sequence B
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2005-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2a2jA00
3CP3A 1NRGA 1G76A 2Q9KA 3BPKA 3K86A 4HMWA 2ED4A 1WV4A 2HQ7A 3R5PA 4HX6A 4XHYA 3CB0A 1RFEA 1TY9A 1USFA 1USCA 2GJGA 3H96A 3BNKA 2D36A 1W3PA 3VY5A 3ZOGA 1I0RA 4HMUA 1W3OA 2D37A 5CHOA 2I51A 3ZODA 1G78A 1AXJA 1W3QA 3K87A 5JABA 3R5ZA 2E83A 3ZOFA 2IMLA 5CHEC 4QVBA 3ZOCA 2FHQA 4XJ2A 2VPAA 3HY8A 1W3RA 4F07A 2OL5A 1I0SA 4IRAA 2X1KA 2D38A 4Y9IA 2AQ6A 2NR4A 3AWHA 3KYGA 2OU5A 3NFWA 3VYAA 1RZ1A 3GASA 1T9MA 3U0IA 2IABA 3HMZA 1JNWA 2RE7A 1XXOA 1RZ0A 3FKHA 3DNHA 2I02A 1WLIA 2IG6A 3U5WA 3ZOHA 1VL7A 2HHZA 4HMTA 3ZOEA 1CI0A 1EJEA 2ARZA 5ESCA 2FURA 1XHNA 2R0XA 3KYFA 4L82A 1WGBA 2FG9A 3EC6A 4HMSA 3E4VA 2A2JA 4Z85A 3RH7A 2ECRA 4ZKYA 2QCKA 1YOAA 5BNCA 3R5YA 4HMVA 3U34A 1FLMA 1YLNA 3SWJA 2D5MA 2HTDA 2HQ9A 2RDEA 1Y30A 3R5LA 3R5RA 1WLKA 3A6QA 3F7EA 1DNLA 3DB0A 2X1JA 4HMXA 3PFTA 3A20A 2ASFA 1G79A 3B5MA 2PTFA 4N7RC 3IN6A 3AMFA 3A6RA 3VY2A 2R6VA 1W9AA 2ECUA 2QEAA 4YBNA 3FGEA 4YWNA 3BA3A 3TGVA 3U35A 3R5WA 3DMBA 2HTIA 4R82A 3K88A 1G77A
chains in the Genus database with same CATH superfamily
3CP3A 1NRGA 2L1TA 1G76A 2Q9KA 3BPKA 3K86A 4HMWA 2ED4A 1WV4A 2HQ7A 3R5PA 4HX6A 4XHYA 3CB0A 3V4HA 1RFEA 1TY9A 1USFA 1USCA 2GJGA 3H96A 3BNKA 2D36A 1W3PA 3VY5A 3ZOGA 1I0RA 4HMUA 1W3OA 2D37A 5CHOA 2I51A 3ZODA 1G78A 4MTKA 4TV4A 1AXJA 1W3QA 3K87A 5JABA 3R5ZA 2E83A 3ZOFA 2IMLA 5CHEC 4QVBA 3ZOCA 2FHQA 4XJ2A 2GUJA 2VPAA 3HY8A 1W3RA 4F07A 2OL5A 1I0SA 4IRAA 2X1KA 2D38A 4HKHA 4Y9IA 2AQ6A 2NR4A 3AWHA 3KYGA 2OU5A 3NFWA 3VYAA 2P5ZX 1RZ1A 3GASA 1T9MA 4UHVA 3U0IA 2IABA 3HMZA 1JNWA 2RE7A 1XXOA 1RZ0A 3FKHA 3DNHA 2I02A 1WLIA 2IG6A 3U5WA 3ZOHA 1VL7A 2HHZA 4HMTA 3ZOEA 1CI0A 1EJEA 2ARZA 5ESCA 2FURA 1XHNA 2R0XA 3KYFA 4L82A 1WGBA 2FG9A 3EC6A 4HMSA 3E4VA 2A2JA 4Z85A 3RH7A 2ECRA 2K4QA 4ZKYA 2QCKA 1YOAA 5BNCA 3R5YA 4HMVA 3U34A 1FLMA 1YLNA 3SWJA 2D5MA 2HTDA 2HQ9A 2RDEA 1Y30A 3R5LA 3R5RA 1WLKA 3A6QA 3F7EA 1DNLA 3DB0A 3HE1A 2X1JA 4HMXA 3PFTA 4W64A 3A20A 2ASFA 1G79A 3B5MA 2PTFA 4N7RC 1Y12A 3IN6A 3AMFA 3A6RA 3VY2A 2R6VA 1W9AA 2ECUA 2QEAA 4YBNA 3FGEA 4YWNA 3BA3A 3TGVA 3U35A 3R5WA 3DMBA 2HTIA 4R82A 3EAAA 3K88A 1G77A
chains in the Genus database with same CATH topology
3CP3A 1NRGA 1G76A 2Q9KA 3BPKA 3K86A 4HMWA 2ED4A 1WV4A 2HQ7A 3R5PA 4HX6A 4XHYA 3CB0A 1RFEA 1TY9A 1USFA 1USCA 2GJGA 3H96A 3BNKA 2D36A 1W3PA 3VY5A 3ZOGA 1I0RA 4HMUA 1W3OA 2D37A 5CHOA 2I51A 3ZODA 1G78A 1AXJA 1W3QA 3K87A 5JABA 3R5ZA 2E83A 3ZOFA 2IMLA 5CHEC 4QVBA 3ZOCA 2FHQA 4XJ2A 2VPAA 3HY8A 1W3RA 4F07A 2OL5A 1I0SA 4IRAA 2X1KA 2D38A 4Y9IA 2AQ6A 2NR4A 3AWHA 3KYGA 2OU5A 3NFWA 3VYAA 1RZ1A 3GASA 1T9MA 3U0IA 2IABA 3HMZA 1JNWA 2RE7A 1XXOA 1RZ0A 3FKHA 3DNHA 2I02A 1WLIA 2IG6A 3U5WA 3ZOHA 1VL7A 2HHZA 4HMTA 3ZOEA 1CI0A 1EJEA 2ARZA 5ESCA 2FURA 1XHNA 2R0XA 3KYFA 4L82A 1WGBA 2FG9A 3EC6A 4HMSA 3E4VA 2A2JA 4Z85A 3RH7A 2ECRA 4ZKYA 2QCKA 1YOAA 5BNCA 3R5YA 4HMVA 3U34A 1FLMA 1YLNA 3SWJA 2D5MA 2HTDA 2HQ9A 2RDEA 1Y30A 3R5LA 3R5RA 1WLKA 3A6QA 3F7EA 1DNLA 3DB0A 2X1JA 4HMXA 3PFTA 3A20A 2ASFA 1G79A 3B5MA 2PTFA 4N7RC 3IN6A 3AMFA 3A6RA 3VY2A 2R6VA 1W9AA 2ECUA 2QEAA 4YBNA 3FGEA 4YWNA 3BA3A 3TGVA 3U35A 3R5WA 3DMBA 2HTIA 4R82A 3K88A 1G77A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CP3 A;  1NRG A;  1G76 A;  2Q9K A;  3BPK A;  3K86 A;  4HMW A;  2ED4 A;  1WV4 A;  2HQ7 A;  3R5P A;  4HX6 A;  4XHY A;  3CB0 A;  1RFE A;  1TY9 A;  1USF A;  1USC A;  2GJG A;  3H96 A;  3BNK A;  2D36 A;  1W3P A;  3VY5 A;  3ZOG A;  1I0R A;  4HMU A;  1W3O A;  2D37 A;  5CHO A;  2I51 A;  3ZOD A;  1G78 A;  1AXJ A;  1W3Q A;  3K87 A;  5JAB A;  3R5Z A;  2E83 A;  3ZOF A;  2IML A;  5CHE C;  4QVB A;  3ZOC A;  2FHQ A;  4XJ2 A;  2VPA A;  3HY8 A;  1W3R A;  4F07 A;  2OL5 A;  1I0S A;  4IRA A;  2X1K A;  2D38 A;  4Y9I A;  2AQ6 A;  2NR4 A;  3AWH A;  3KYG A;  2OU5 A;  3NFW A;  3VYA A;  1RZ1 A;  3GAS A;  1T9M A;  3U0I A;  2IAB A;  3HMZ A;  1JNW A;  2RE7 A;  1XXO A;  1RZ0 A;  3FKH A;  3DNH A;  2I02 A;  1WLI A;  2IG6 A;  3U5W A;  3ZOH A;  1VL7 A;  2HHZ A;  4HMT A;  3ZOE A;  1CI0 A;  1EJE A;  2ARZ A;  5ESC A;  2FUR A;  1XHN A;  2R0X A;  3KYF A;  4L82 A;  1WGB A;  2FG9 A;  3EC6 A;  4HMS A;  3E4V A;  2A2J A;  4Z85 A;  3RH7 A;  2ECR A;  4ZKY A;  2QCK A;  1YOA A;  5BNC A;  3R5Y A;  4HMV A;  3U34 A;  1FLM A;  1YLN A;  3SWJ A;  2D5M A;  2HTD A;  2HQ9 A;  2RDE A;  1Y30 A;  3R5L A;  3R5R A;  1WLK A;  3A6Q A;  3F7E A;  1DNL A;  3DB0 A;  2X1J A;  4HMX A;  3PFT A;  3A20 A;  2ASF A;  1G79 A;  3B5M A;  2PTF A;  4N7R C;  3IN6 A;  3AMF A;  3A6R A;  3VY2 A;  2R6V A;  1W9A A;  2ECU A;  2QEA A;  4YBN A;  3FGE A;  4YWN A;  3BA3 A;  3TGV A;  3U35 A;  3R5W A;  3DMB A;  2HTI A;  4R82 A;  3K88 A;  1G77 A; 
#chains in the Genus database with same CATH topology
 3CP3 A;  1NRG A;  2L1T A;  1G76 A;  2Q9K A;  3BPK A;  3K86 A;  4HMW A;  2ED4 A;  1WV4 A;  2HQ7 A;  3R5P A;  4HX6 A;  4XHY A;  3CB0 A;  3V4H A;  1RFE A;  1TY9 A;  1USF A;  1USC A;  2GJG A;  3H96 A;  3BNK A;  2D36 A;  1W3P A;  3VY5 A;  3ZOG A;  1I0R A;  4HMU A;  1W3O A;  2D37 A;  5CHO A;  2I51 A;  3ZOD A;  1G78 A;  4MTK A;  4TV4 A;  1AXJ A;  1W3Q A;  3K87 A;  5JAB A;  3R5Z A;  2E83 A;  3ZOF A;  2IML A;  5CHE C;  4QVB A;  3ZOC A;  2FHQ A;  4XJ2 A;  2GUJ A;  2VPA A;  3HY8 A;  1W3R A;  4F07 A;  2OL5 A;  1I0S A;  4IRA A;  2X1K A;  2D38 A;  4HKH A;  4Y9I A;  2AQ6 A;  2NR4 A;  3AWH A;  3KYG A;  2OU5 A;  3NFW A;  3VYA A;  2P5Z X;  1RZ1 A;  3GAS A;  1T9M A;  4UHV A;  3U0I A;  2IAB A;  3HMZ A;  1JNW A;  2RE7 A;  1XXO A;  1RZ0 A;  3FKH A;  3DNH A;  2I02 A;  1WLI A;  2IG6 A;  3U5W A;  3ZOH A;  1VL7 A;  2HHZ A;  4HMT A;  3ZOE A;  1CI0 A;  1EJE A;  2ARZ A;  5ESC A;  2FUR A;  1XHN A;  2R0X A;  3KYF A;  4L82 A;  1WGB A;  2FG9 A;  3EC6 A;  4HMS A;  3E4V A;  2A2J A;  4Z85 A;  3RH7 A;  2ECR A;  2K4Q A;  4ZKY A;  2QCK A;  1YOA A;  5BNC A;  3R5Y A;  4HMV A;  3U34 A;  1FLM A;  1YLN A;  3SWJ A;  2D5M A;  2HTD A;  2HQ9 A;  2RDE A;  1Y30 A;  3R5L A;  3R5R A;  1WLK A;  3A6Q A;  3F7E A;  1DNL A;  3DB0 A;  3HE1 A;  2X1J A;  4HMX A;  3PFT A;  4W64 A;  3A20 A;  2ASF A;  1G79 A;  3B5M A;  2PTF A;  4N7R C;  1Y12 A;  3IN6 A;  3AMF A;  3A6R A;  3VY2 A;  2R6V A;  1W9A A;  2ECU A;  2QEA A;  4YBN A;  3FGE A;  4YWN A;  3BA3 A;  3TGV A;  3U35 A;  3R5W A;  3DMB A;  2HTI A;  4R82 A;  3EAA A;  3K88 A;  1G77 A; 
#chains in the Genus database with same CATH homology
 3CP3 A;  1NRG A;  1G76 A;  2Q9K A;  3BPK A;  3K86 A;  4HMW A;  2ED4 A;  1WV4 A;  2HQ7 A;  3R5P A;  4HX6 A;  4XHY A;  3CB0 A;  1RFE A;  1TY9 A;  1USF A;  1USC A;  2GJG A;  3H96 A;  3BNK A;  2D36 A;  1W3P A;  3VY5 A;  3ZOG A;  1I0R A;  4HMU A;  1W3O A;  2D37 A;  5CHO A;  2I51 A;  3ZOD A;  1G78 A;  1AXJ A;  1W3Q A;  3K87 A;  5JAB A;  3R5Z A;  2E83 A;  3ZOF A;  2IML A;  5CHE C;  4QVB A;  3ZOC A;  2FHQ A;  4XJ2 A;  2VPA A;  3HY8 A;  1W3R A;  4F07 A;  2OL5 A;  1I0S A;  4IRA A;  2X1K A;  2D38 A;  4Y9I A;  2AQ6 A;  2NR4 A;  3AWH A;  3KYG A;  2OU5 A;  3NFW A;  3VYA A;  1RZ1 A;  3GAS A;  1T9M A;  3U0I A;  2IAB A;  3HMZ A;  1JNW A;  2RE7 A;  1XXO A;  1RZ0 A;  3FKH A;  3DNH A;  2I02 A;  1WLI A;  2IG6 A;  3U5W A;  3ZOH A;  1VL7 A;  2HHZ A;  4HMT A;  3ZOE A;  1CI0 A;  1EJE A;  2ARZ A;  5ESC A;  2FUR A;  1XHN A;  2R0X A;  3KYF A;  4L82 A;  1WGB A;  2FG9 A;  3EC6 A;  4HMS A;  3E4V A;  2A2J A;  4Z85 A;  3RH7 A;  2ECR A;  4ZKY A;  2QCK A;  1YOA A;  5BNC A;  3R5Y A;  4HMV A;  3U34 A;  1FLM A;  1YLN A;  3SWJ A;  2D5M A;  2HTD A;  2HQ9 A;  2RDE A;  1Y30 A;  3R5L A;  3R5R A;  1WLK A;  3A6Q A;  3F7E A;  1DNL A;  3DB0 A;  2X1J A;  4HMX A;  3PFT A;  3A20 A;  2ASF A;  1G79 A;  3B5M A;  2PTF A;  4N7R C;  3IN6 A;  3AMF A;  3A6R A;  3VY2 A;  2R6V A;  1W9A A;  2ECU A;  2QEA A;  4YBN A;  3FGE A;  4YWN A;  3BA3 A;  3TGV A;  3U35 A;  3R5W A;  3DMB A;  2HTI A;  4R82 A;  3K88 A;  1G77 A; 
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