The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
56
|
sequence length |
203
|
structure length |
202
|
Chain Sequence |
PEKDGGDLDFDWLDDGWLTLLRRWLNDAQRAGVSEPNAMVLATVADGKPVTRSVLCKILDESGVAFFTSYTSAKGEQLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVGSRAQLDNQLAEVTRRFADQDQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRIRVANGRLERLQPGS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of a putative pyridoxine 5'-phosphate oxidase (Rv2607) from Mycobacterium tuberculosis.
pubmed doi rcsb |
| molecule keywords |
Pyridoxamine 5'-phosphate oxidase
|
| molecule tags |
Oxidoreductase
|
| source organism |
Mycobacterium tuberculosis
|
| total genus |
56
|
| structure length |
202
|
| sequence length |
203
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
1.4.3.5: Pyridoxal 5'-phosphate synthase. |
| pdb deposition date | 2005-06-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01243 | Putative_PNPOx | Pyridoxamine 5'-phosphate oxidase |
| A | PF10590 | PNP_phzG_C | Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Pnp Oxidase; Chain A | Electron Transport, Fmn-binding Protein; Chain A |
#chains in the Genus database with same CATH superfamily 1W3R A; 2PTF A; 3CB0 A; 1W3O A; 5BNC A; 1VL7 A; 3BNK A; 2ARZ A; 3K88 A; 4HMT A; 1Y30 A; 3A6R A; 4XJ2 A; 1XXO A; 2Q9K A; 3NFW A; 2I51 A; 3KYF A; 3H96 A; 4IRA A; 4QVB A; 3TGV A; 1EJE A; 4Y9I A; 1NRG A; 3AMF A; 2HTI A; 1FLM A; 3A20 A; 2HQ7 A; 2D5M A; 3U5W A; 3KYG A; 1TY9 A; 2NR4 A; 3ZOD A; 5CHE C; 4ZKY A; 3HMZ A; 2OU5 A; 3RH7 A; 2FHQ A; 1I0S A; 3K86 A; 2QCK A; 2QEA A; 3VY5 A; 3BPK A; 1DNL A; 1W3P A; 3B5M A; 1WGB A; 4L82 A; 2VPA A; 1RFE A; 4YWN A; 2HHZ A; 3U34 A; 2HQ9 A; 3K87 A; 3PFT A; 3R5Y A; 4HX6 A; 2OL5 A; 1G79 A; 1RZ1 A; 2AQ6 A; 2D36 A; 3BA3 A; 3FKH A; 1AXJ A; 2RE7 A; 3EC6 A; 4HMV A; 1WV4 A; 3ZOH A; 3ZOG A; 1YLN A; 2ECR A; 2A2J A; 3ZOC A; 2IG6 A; 3ZOE A; 1USF A; 3CP3 A; 2X1K A; 3DMB A; 3SWJ A; 3IN6 A; 4XHY A; 3VYA A; 3R5L A; 2X1J A; 1I0R A; 2D37 A; 4HMU A; 4R82 A; 3F7E A; 4Z85 A; 1CI0 A; 1WLI A; 1YOA A; 1RZ0 A; 3VY2 A; 3ZOF A; 3FGE A; 3R5R A; 2GJG A; 3DNH A; 3U0I A; 4YBN A; 3DB0 A; 1G77 A; 1W9A A; 1G78 A; 3HY8 A; 3E4V A; 4F07 A; 1XHN A; 2FUR A; 2FG9 A; 1G76 A; 2E83 A; 2ECU A; 3AWH A; 3R5P A; 1W3Q A; 4HMX A; 1T9M A; 2R6V A; 2ED4 A; 4N7R C; 2IML A; 2HTD A; 3R5Z A; 1WLK A; 2IAB A; 2I02 A; 2R0X A; 1USC A; 3A6Q A; 4HMW A; 4HMS A; 3GAS A; 3R5W A; 1JNW A; 5ESC A; 2ASF A; 5JAB A; 3U35 A; 2D38 A; 5CHO A; 2RDE A; #chains in the Genus database with same CATH topology 1W3R A; 4HKH A; 2PTF A; 3CB0 A; 1W3O A; 5BNC A; 1VL7 A; 3BNK A; 2ARZ A; 3K88 A; 4HMT A; 1Y30 A; 3A6R A; 4XJ2 A; 2P5Z X; 1XXO A; 2Q9K A; 3NFW A; 2I51 A; 3KYF A; 3H96 A; 4IRA A; 4QVB A; 3TGV A; 4MTK A; 1EJE A; 4Y9I A; 1NRG A; 3AMF A; 2HTI A; 1FLM A; 3A20 A; 2HQ7 A; 2D5M A; 3U5W A; 3KYG A; 1TY9 A; 2L1T A; 2NR4 A; 3ZOD A; 5CHE C; 4ZKY A; 3HMZ A; 2OU5 A; 3RH7 A; 2FHQ A; 1I0S A; 3K86 A; 2QCK A; 2QEA A; 3VY5 A; 4W64 A; 3BPK A; 1DNL A; 1W3P A; 3B5M A; 1WGB A; 4L82 A; 2VPA A; 1RFE A; 4YWN A; 2HHZ A; 3U34 A; 2HQ9 A; 3HE1 A; 3EAA A; 3K87 A; 3PFT A; 3R5Y A; 4HX6 A; 2OL5 A; 1G79 A; 1RZ1 A; 2AQ6 A; 2D36 A; 3BA3 A; 3FKH A; 1AXJ A; 2RE7 A; 3EC6 A; 4HMV A; 1WV4 A; 3ZOH A; 3ZOG A; 1YLN A; 2ECR A; 1Y12 A; 2GUJ A; 2A2J A; 3ZOC A; 2IG6 A; 3ZOE A; 1USF A; 3CP3 A; 2X1K A; 3DMB A; 3SWJ A; 3IN6 A; 4XHY A; 3VYA A; 3R5L A; 2X1J A; 1I0R A; 2D37 A; 4HMU A; 4R82 A; 3F7E A; 4Z85 A; 1CI0 A; 1WLI A; 1YOA A; 1RZ0 A; 3VY2 A; 3ZOF A; 3FGE A; 3R5R A; 2GJG A; 3DNH A; 4UHV A; 3U0I A; 4TV4 A; 4YBN A; 3DB0 A; 1G77 A; 1W9A A; 1G78 A; 3HY8 A; 3E4V A; 4F07 A; 2K4Q A; 1XHN A; 3V4H A; 2FUR A; 2FG9 A; 1G76 A; 2E83 A; 2ECU A; 3AWH A; 3R5P A; 1W3Q A; 4HMX A; 1T9M A; 2R6V A; 2ED4 A; 4N7R C; 2IML A; 2HTD A; 3R5Z A; 1WLK A; 2IAB A; 2I02 A; 2R0X A; 1USC A; 3A6Q A; 4HMW A; 4HMS A; 3GAS A; 3R5W A; 1JNW A; 5ESC A; 2ASF A; 5JAB A; 3U35 A; 2D38 A; 5CHO A; 2RDE A; #chains in the Genus database with same CATH homology 1W3R A; 2PTF A; 3CB0 A; 1W3O A; 5BNC A; 1VL7 A; 3BNK A; 2ARZ A; 3K88 A; 4HMT A; 1Y30 A; 3A6R A; 4XJ2 A; 1XXO A; 2Q9K A; 3NFW A; 2I51 A; 3KYF A; 3H96 A; 4IRA A; 4QVB A; 3TGV A; 1EJE A; 4Y9I A; 1NRG A; 3AMF A; 2HTI A; 1FLM A; 3A20 A; 2HQ7 A; 2D5M A; 3U5W A; 3KYG A; 1TY9 A; 2NR4 A; 3ZOD A; 5CHE C; 4ZKY A; 3HMZ A; 2OU5 A; 3RH7 A; 2FHQ A; 1I0S A; 3K86 A; 2QCK A; 2QEA A; 3VY5 A; 3BPK A; 1DNL A; 1W3P A; 3B5M A; 1WGB A; 4L82 A; 2VPA A; 1RFE A; 4YWN A; 2HHZ A; 3U34 A; 2HQ9 A; 3K87 A; 3PFT A; 3R5Y A; 4HX6 A; 2OL5 A; 1G79 A; 1RZ1 A; 2AQ6 A; 2D36 A; 3BA3 A; 3FKH A; 1AXJ A; 2RE7 A; 3EC6 A; 4HMV A; 1WV4 A; 3ZOH A; 3ZOG A; 1YLN A; 2ECR A; 2A2J A; 3ZOC A; 2IG6 A; 3ZOE A; 1USF A; 3CP3 A; 2X1K A; 3DMB A; 3SWJ A; 3IN6 A; 4XHY A; 3VYA A; 3R5L A; 2X1J A; 1I0R A; 2D37 A; 4HMU A; 4R82 A; 3F7E A; 4Z85 A; 1CI0 A; 1WLI A; 1YOA A; 1RZ0 A; 3VY2 A; 3ZOF A; 3FGE A; 3R5R A; 2GJG A; 3DNH A; 3U0I A; 4YBN A; 3DB0 A; 1G77 A; 1W9A A; 1G78 A; 3HY8 A; 3E4V A; 4F07 A; 1XHN A; 2FUR A; 2FG9 A; 1G76 A; 2E83 A; 2ECU A; 3AWH A; 3R5P A; 1W3Q A; 4HMX A; 1T9M A; 2R6V A; 2ED4 A; 4N7R C; 2IML A; 2HTD A; 3R5Z A; 1WLK A; 2IAB A; 2I02 A; 2R0X A; 1USC A; 3A6Q A; 4HMW A; 4HMS A; 3GAS A; 3R5W A; 1JNW A; 5ESC A; 2ASF A; 5JAB A; 3U35 A; 2D38 A; 5CHO A; 2RDE A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
