2ASFA

Crystal structure of the conserved hypothetical protein rv2074 from mycobacterium tuberculosis 1.6 a
Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
125
structure length
125
Chain Sequence
SDDALAFLSERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGARWLSLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLGSADLLD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS7 (117-129)AH1 (12-18)AH3 (94-108)AH2 (60-68)TI1 (30-33)S2 (35-40)S3 (43-45)TIV1 (45-48)S4 (50-56)TI2 (46-49)S5 (70-77)TII1 (56-59)TII'1 (77-80)TI3 (114-117)S1 (24-29)S6 (80-91)Updating...
connected with : NaN
publication title The molecular structure of Rv2074, a probable pyridoxine 5'-phosphate oxidase from Mycobacterium tuberculosis, at 1.6 angstroms resolution.
pubmed doi rcsb
molecule keywords Hypothetical protein Rv2074
molecule tags Structural genomics, unknown function
source organism Mycobacterium tuberculosis
total genus 30
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2005-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2asfA00
5JABA 1W9AA 4YBNA 1G76A 2GJGA 3F7EA 3ZOHA 3VY5A 3A6QA 4HX6A 3ZOGA 4Y9IA 3K86A 1T9MA 1VL7A 3R5LA 2A2JA 1WLKA 1TY9A 3BA3A 3SWJA 1W3QA 1G77A 4R82A 3IN6A 3ZODA 3R5PA 2Q9KA 3U5WA 1DNLA 2D5MA 1I0SA 1WLIA 3B5MA 3BPKA 4L82A 1Y30A 2FHQA 1W3PA 2ECUA 4ZKYA 1RFEA 1RZ0A 3TGVA 3EC6A 1G79A 1YOAA 1RZ1A 3E4VA 3HMZA 2ED4A 1FLMA 4HMTA 3FKHA 3DB0A 2ASFA 2QEAA 5ESCA 2VPAA 2X1JA 3FGEA 2D36A 2IMLA 1G78A 4F07A 3U35A 1I0RA 1W3RA 3R5RA 2HQ9A 4HMXA 4IRAA 3U0IA 5BNCA 3ZOFA 1XHNA 2ECRA 2HHZA 3AWHA 1WGBA 1USFA 3CB0A 4QVBA 3DMBA 2R0XA 3K87A 2I51A 3A6RA 2R6VA 3DNHA 2PTFA 3GASA 4XJ2A 4YWNA 2RDEA 2FURA 3RH7A 3ZOEA 2IABA 1JNWA 2RE7A 2OU5A 1W3OA 4N7RC 4HMSA 3U34A 2AQ6A 4Z85A 2NR4A 3AMFA 2FG9A 2HTIA 4HMVA 2ARZA 3R5ZA 1YLNA 4HMUA 3BNKA 3K88A 2HQ7A 2E83A 3R5YA 2D37A 3ZOCA 5CHOA 1USCA 2IG6A 2OL5A 2X1KA 3A20A 3VYAA 3NFWA 4XHYA 3HY8A 1NRGA 1XXOA 2QCKA 5CHEC 3CP3A 2D38A 3H96A 4HMWA 3PFTA 1AXJA 3R5WA 1CI0A 2HTDA 3KYFA 2I02A 1WV4A 3KYGA 1EJEA 3VY2A
chains in the Genus database with same CATH superfamily
5JABA 1W9AA 4YBNA 1G76A 2GJGA 3F7EA 3ZOHA 3VY5A 3A6QA 4HX6A 4MTKA 3ZOGA 4Y9IA 3K86A 1T9MA 1VL7A 3R5LA 2A2JA 1WLKA 1TY9A 3BA3A 3SWJA 1W3QA 1G77A 4R82A 3IN6A 3ZODA 3R5PA 2Q9KA 3U5WA 1DNLA 2D5MA 1I0SA 1WLIA 3B5MA 4UHVA 3BPKA 4L82A 1Y30A 2FHQA 1W3PA 2ECUA 4ZKYA 1RFEA 1RZ0A 3TGVA 3EC6A 1G79A 1YOAA 1RZ1A 3E4VA 3HMZA 2ED4A 1FLMA 4HMTA 3FKHA 3DB0A 2ASFA 2QEAA 5ESCA 2VPAA 2X1JA 3FGEA 2D36A 2IMLA 1G78A 4F07A 3U35A 1I0RA 1W3RA 3R5RA 2HQ9A 4HMXA 4IRAA 3U0IA 5BNCA 3ZOFA 1XHNA 2ECRA 2HHZA 3AWHA 3V4HA 1WGBA 1USFA 3CB0A 4QVBA 3DMBA 2R0XA 3K87A 2I51A 3A6RA 2R6VA 3DNHA 2PTFA 3GASA 4XJ2A 4YWNA 2RDEA 2FURA 3RH7A 3ZOEA 2IABA 1JNWA 2RE7A 2OU5A 1W3OA 4N7RC 4HMSA 3U34A 2AQ6A 4Z85A 2NR4A 3AMFA 2FG9A 2HTIA 4HMVA 2ARZA 3R5ZA 1YLNA 4HMUA 3BNKA 3K88A 4W64A 2HQ7A 2E83A 3R5YA 4TV4A 2D37A 3ZOCA 5CHOA 1USCA 2IG6A 2OL5A 2L1TA 2X1KA 3A20A 3VYAA 3NFWA 4XHYA 3HY8A 2P5ZX 2K4QA 1NRGA 4HKHA 1XXOA 2QCKA 5CHEC 3CP3A 2D38A 3H96A 3HE1A 4HMWA 2GUJA 3PFTA 1AXJA 3R5WA 1CI0A 1Y12A 2HTDA 3EAAA 3KYFA 2I02A 1WV4A 3KYGA 1EJEA 3VY2A
chains in the Genus database with same CATH topology
5JABA 1W9AA 4YBNA 1G76A 2GJGA 3F7EA 3ZOHA 3VY5A 3A6QA 4HX6A 3ZOGA 4Y9IA 3K86A 1T9MA 1VL7A 3R5LA 2A2JA 1WLKA 1TY9A 3BA3A 3SWJA 1W3QA 1G77A 4R82A 3IN6A 3ZODA 3R5PA 2Q9KA 3U5WA 1DNLA 2D5MA 1I0SA 1WLIA 3B5MA 3BPKA 4L82A 1Y30A 2FHQA 1W3PA 2ECUA 4ZKYA 1RFEA 1RZ0A 3TGVA 3EC6A 1G79A 1YOAA 1RZ1A 3E4VA 3HMZA 2ED4A 1FLMA 4HMTA 3FKHA 3DB0A 2ASFA 2QEAA 5ESCA 2VPAA 2X1JA 3FGEA 2D36A 2IMLA 1G78A 4F07A 3U35A 1I0RA 1W3RA 3R5RA 2HQ9A 4HMXA 4IRAA 3U0IA 5BNCA 3ZOFA 1XHNA 2ECRA 2HHZA 3AWHA 1WGBA 1USFA 3CB0A 4QVBA 3DMBA 2R0XA 3K87A 2I51A 3A6RA 2R6VA 3DNHA 2PTFA 3GASA 4XJ2A 4YWNA 2RDEA 2FURA 3RH7A 3ZOEA 2IABA 1JNWA 2RE7A 2OU5A 1W3OA 4N7RC 4HMSA 3U34A 2AQ6A 4Z85A 2NR4A 3AMFA 2FG9A 2HTIA 4HMVA 2ARZA 3R5ZA 1YLNA 4HMUA 3BNKA 3K88A 2HQ7A 2E83A 3R5YA 2D37A 3ZOCA 5CHOA 1USCA 2IG6A 2OL5A 2X1KA 3A20A 3VYAA 3NFWA 4XHYA 3HY8A 1NRGA 1XXOA 2QCKA 5CHEC 3CP3A 2D38A 3H96A 4HMWA 3PFTA 1AXJA 3R5WA 1CI0A 2HTDA 3KYFA 2I02A 1WV4A 3KYGA 1EJEA 3VY2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JAB A;  1W9A A;  4YBN A;  1G76 A;  2GJG A;  3F7E A;  3ZOH A;  3VY5 A;  3A6Q A;  4HX6 A;  3ZOG A;  4Y9I A;  3K86 A;  1T9M A;  1VL7 A;  3R5L A;  2A2J A;  1WLK A;  1TY9 A;  3BA3 A;  3SWJ A;  1W3Q A;  1G77 A;  4R82 A;  3IN6 A;  3ZOD A;  3R5P A;  2Q9K A;  3U5W A;  1DNL A;  2D5M A;  1I0S A;  1WLI A;  3B5M A;  3BPK A;  4L82 A;  1Y30 A;  2FHQ A;  1W3P A;  2ECU A;  4ZKY A;  1RFE A;  1RZ0 A;  3TGV A;  3EC6 A;  1G79 A;  1YOA A;  1RZ1 A;  3E4V A;  3HMZ A;  2ED4 A;  1FLM A;  4HMT A;  3FKH A;  3DB0 A;  2ASF A;  2QEA A;  5ESC A;  2VPA A;  2X1J A;  3FGE A;  2D36 A;  2IML A;  1G78 A;  4F07 A;  3U35 A;  1I0R A;  1W3R A;  3R5R A;  2HQ9 A;  4HMX A;  4IRA A;  3U0I A;  5BNC A;  3ZOF A;  1XHN A;  2ECR A;  2HHZ A;  3AWH A;  1WGB A;  1USF A;  3CB0 A;  4QVB A;  3DMB A;  2R0X A;  3K87 A;  2I51 A;  3A6R A;  2R6V A;  3DNH A;  2PTF A;  3GAS A;  4XJ2 A;  4YWN A;  2RDE A;  2FUR A;  3RH7 A;  3ZOE A;  2IAB A;  1JNW A;  2RE7 A;  2OU5 A;  1W3O A;  4N7R C;  4HMS A;  3U34 A;  2AQ6 A;  4Z85 A;  2NR4 A;  3AMF A;  2FG9 A;  2HTI A;  4HMV A;  2ARZ A;  3R5Z A;  1YLN A;  4HMU A;  3BNK A;  3K88 A;  2HQ7 A;  2E83 A;  3R5Y A;  2D37 A;  3ZOC A;  5CHO A;  1USC A;  2IG6 A;  2OL5 A;  2X1K A;  3A20 A;  3VYA A;  3NFW A;  4XHY A;  3HY8 A;  1NRG A;  1XXO A;  2QCK A;  5CHE C;  3CP3 A;  2D38 A;  3H96 A;  4HMW A;  3PFT A;  1AXJ A;  3R5W A;  1CI0 A;  2HTD A;  3KYF A;  2I02 A;  1WV4 A;  3KYG A;  1EJE A;  3VY2 A; 
#chains in the Genus database with same CATH topology
 5JAB A;  1W9A A;  4YBN A;  1G76 A;  2GJG A;  3F7E A;  3ZOH A;  3VY5 A;  3A6Q A;  4HX6 A;  4MTK A;  3ZOG A;  4Y9I A;  3K86 A;  1T9M A;  1VL7 A;  3R5L A;  2A2J A;  1WLK A;  1TY9 A;  3BA3 A;  3SWJ A;  1W3Q A;  1G77 A;  4R82 A;  3IN6 A;  3ZOD A;  3R5P A;  2Q9K A;  3U5W A;  1DNL A;  2D5M A;  1I0S A;  1WLI A;  3B5M A;  4UHV A;  3BPK A;  4L82 A;  1Y30 A;  2FHQ A;  1W3P A;  2ECU A;  4ZKY A;  1RFE A;  1RZ0 A;  3TGV A;  3EC6 A;  1G79 A;  1YOA A;  1RZ1 A;  3E4V A;  3HMZ A;  2ED4 A;  1FLM A;  4HMT A;  3FKH A;  3DB0 A;  2ASF A;  2QEA A;  5ESC A;  2VPA A;  2X1J A;  3FGE A;  2D36 A;  2IML A;  1G78 A;  4F07 A;  3U35 A;  1I0R A;  1W3R A;  3R5R A;  2HQ9 A;  4HMX A;  4IRA A;  3U0I A;  5BNC A;  3ZOF A;  1XHN A;  2ECR A;  2HHZ A;  3AWH A;  3V4H A;  1WGB A;  1USF A;  3CB0 A;  4QVB A;  3DMB A;  2R0X A;  3K87 A;  2I51 A;  3A6R A;  2R6V A;  3DNH A;  2PTF A;  3GAS A;  4XJ2 A;  4YWN A;  2RDE A;  2FUR A;  3RH7 A;  3ZOE A;  2IAB A;  1JNW A;  2RE7 A;  2OU5 A;  1W3O A;  4N7R C;  4HMS A;  3U34 A;  2AQ6 A;  4Z85 A;  2NR4 A;  3AMF A;  2FG9 A;  2HTI A;  4HMV A;  2ARZ A;  3R5Z A;  1YLN A;  4HMU A;  3BNK A;  3K88 A;  4W64 A;  2HQ7 A;  2E83 A;  3R5Y A;  4TV4 A;  2D37 A;  3ZOC A;  5CHO A;  1USC A;  2IG6 A;  2OL5 A;  2L1T A;  2X1K A;  3A20 A;  3VYA A;  3NFW A;  4XHY A;  3HY8 A;  2P5Z X;  2K4Q A;  1NRG A;  4HKH A;  1XXO A;  2QCK A;  5CHE C;  3CP3 A;  2D38 A;  3H96 A;  3HE1 A;  4HMW A;  2GUJ A;  3PFT A;  1AXJ A;  3R5W A;  1CI0 A;  1Y12 A;  2HTD A;  3EAA A;  3KYF A;  2I02 A;  1WV4 A;  3KYG A;  1EJE A;  3VY2 A; 
#chains in the Genus database with same CATH homology
 5JAB A;  1W9A A;  4YBN A;  1G76 A;  2GJG A;  3F7E A;  3ZOH A;  3VY5 A;  3A6Q A;  4HX6 A;  3ZOG A;  4Y9I A;  3K86 A;  1T9M A;  1VL7 A;  3R5L A;  2A2J A;  1WLK A;  1TY9 A;  3BA3 A;  3SWJ A;  1W3Q A;  1G77 A;  4R82 A;  3IN6 A;  3ZOD A;  3R5P A;  2Q9K A;  3U5W A;  1DNL A;  2D5M A;  1I0S A;  1WLI A;  3B5M A;  3BPK A;  4L82 A;  1Y30 A;  2FHQ A;  1W3P A;  2ECU A;  4ZKY A;  1RFE A;  1RZ0 A;  3TGV A;  3EC6 A;  1G79 A;  1YOA A;  1RZ1 A;  3E4V A;  3HMZ A;  2ED4 A;  1FLM A;  4HMT A;  3FKH A;  3DB0 A;  2ASF A;  2QEA A;  5ESC A;  2VPA A;  2X1J A;  3FGE A;  2D36 A;  2IML A;  1G78 A;  4F07 A;  3U35 A;  1I0R A;  1W3R A;  3R5R A;  2HQ9 A;  4HMX A;  4IRA A;  3U0I A;  5BNC A;  3ZOF A;  1XHN A;  2ECR A;  2HHZ A;  3AWH A;  1WGB A;  1USF A;  3CB0 A;  4QVB A;  3DMB A;  2R0X A;  3K87 A;  2I51 A;  3A6R A;  2R6V A;  3DNH A;  2PTF A;  3GAS A;  4XJ2 A;  4YWN A;  2RDE A;  2FUR A;  3RH7 A;  3ZOE A;  2IAB A;  1JNW A;  2RE7 A;  2OU5 A;  1W3O A;  4N7R C;  4HMS A;  3U34 A;  2AQ6 A;  4Z85 A;  2NR4 A;  3AMF A;  2FG9 A;  2HTI A;  4HMV A;  2ARZ A;  3R5Z A;  1YLN A;  4HMU A;  3BNK A;  3K88 A;  2HQ7 A;  2E83 A;  3R5Y A;  2D37 A;  3ZOC A;  5CHO A;  1USC A;  2IG6 A;  2OL5 A;  2X1K A;  3A20 A;  3VYA A;  3NFW A;  4XHY A;  3HY8 A;  1NRG A;  1XXO A;  2QCK A;  5CHE C;  3CP3 A;  2D38 A;  3H96 A;  4HMW A;  3PFT A;  1AXJ A;  3R5W A;  1CI0 A;  2HTD A;  3KYF A;  2I02 A;  1WV4 A;  3KYG A;  1EJE A;  3VY2 A; 
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