2ASF | Genus

Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	30
sequence length	125
structure length	125
Chain Sequence	SDDALAFLSERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGARWLSLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLGSADLLD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Mycobacterium tuberculosis
publication title	The molecular structure of Rv2074, a probable pyridoxine 5'-phosphate oxidase from Mycobacterium tuberculosis, at 1.6 angstroms resolution. pubmed doi rcsb
molecule keywords	Hypothetical protein Rv2074
total genus	30
structure length	125
sequence length	125
ec nomenclature
pdb deposition date	2005-08-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01243	Putative_PNPOx	Pyridoxamine 5'-phosphate oxidase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.10	Mainly Beta	Roll	Pnp Oxidase; Chain A	Electron Transport, Fmn-binding Protein; Chain A	2asfA00

1NRGA 1USFA 1JNWA 2IG6A 3H96A 1YLNA 1WLIA 2HTIA 4HMTA 5ESCA 2VPAA 2HTDA 3IN6A 2HHZA 3U35A 4HMUA 3A6RA 1G77A 3A20A 1CI0A 2X1JA 1DNLA 2OL5A 3VY2A 1WLKA 2ECRA 3ZOGA 4HMWA 2RDEA 4IRAA 3K86A 3U34A 4YWNA 1G78A 1XXOA 5CHOA 3BPKA 3U0IA 3R5RA 2PTFA 1WV4A 3AWHA 3DB0A 3R5PA 4HMVA 4L82A 4XJ2A 1RZ1A 3U5WA 2I02A 2D38A 2FG9A 1USCA 2A2JA 1W3RA 3ZOEA 1EJEA 4HMSA 1TY9A 4ZKYA 4Y9IA 1G79A 2R6VA 3ZODA 1FLMA 1I0SA 2Q9KA 4Z85A 2IMLA 5CHEC 3CB0A 3CP3A 3FKHA 1AXJA 3PFTA 3F7EA 3RH7A 1W9AA 3R5YA 1I0RA 2IABA 1VL7A 2HQ9A 3B5MA 4QVBA 2HQ7A 3DMBA 3A6QA 2AQ6A 3KYGA 3ZOCA 5BNCA 4HX6A 3HMZA 1W3OA 1RFEA 2QEAA 3BNKA 1W3PA 1G76A 2RE7A 3R5WA 3HY8A 3K87A 4F07A 2X1KA 1Y30A 4XHYA 2R0XA 2D37A 2I51A 5JABA 3ZOFA 3R5LA 1WGBA 2FURA 1RZ0A 1YOAA 3EC6A 1T9MA 2ECUA 2E83A 3AMFA 3K88A 2D36A 3E4VA 2ARZA 3GASA 4YBNA 3VY5A 2FHQA 1XHNA 3VYAA 2OU5A 3TGVA 2NR4A 2GJGA 2ED4A 3NFWA 2QCKA 3R5ZA 4R82A 3BA3A 3SWJA 3FGEA 4N7RC 3KYFA 3DNHA 2ASFA 3ZOHA 4HMXA 1W3QA 2D5MA
chains in the Genus database with same CATH superfamily

1NRGA 1USFA 1JNWA 2IG6A 3H96A 1YLNA 1WLIA 2HTIA 4HMTA 5ESCA 2VPAA 2HTDA 3IN6A 2HHZA 3U35A 4HMUA 3A6RA 1G77A 3A20A 1CI0A 2GUJA 2X1JA 1DNLA 2OL5A 3VY2A 4MTKA 4HKHA 1WLKA 2ECRA 4W64A 4HMWA 3ZOGA 3EAAA 2RDEA 4IRAA 3K86A 3U34A 4YWNA 3V4HA 1G78A 1XXOA 5CHOA 3BPKA 3U0IA 3R5RA 2PTFA 1WV4A 3AWHA 3DB0A 3R5PA 4HMVA 4L82A 4XJ2A 1RZ1A 3U5WA 2I02A 3HE1A 2D38A 2FG9A 1USCA 2A2JA 1W3RA 3ZOEA 1EJEA 4HMSA 4TV4A 1TY9A 4ZKYA 4Y9IA 1G79A 2R6VA 3ZODA 1FLMA 1I0SA 2Q9KA 4Z85A 2IMLA 5CHEC 3CB0A 3CP3A 3FKHA 4UHVA 1AXJA 3PFTA 3F7EA 3RH7A 1W9AA 3R5YA 1I0RA 2IABA 1VL7A 2HQ9A 3B5MA 4QVBA 2HQ7A 3DMBA 3A6QA 2AQ6A 3KYGA 3ZOCA 5BNCA 4HX6A 3HMZA 1W3OA 1RFEA 2QEAA 3BNKA 1W3PA 1G76A 2RE7A 3R5WA 3HY8A 3K87A 4F07A 2X1KA 1Y30A 4XHYA 2R0XA 2D37A 2I51A 5JABA 3ZOFA 3R5LA 1WGBA 2FURA 1RZ0A 1YOAA 2K4QA 3EC6A 1T9MA 2ECUA 2E83A 3AMFA 3K88A 2D36A 3E4VA 2ARZA 3GASA 4YBNA 3VY5A 2FHQA 2P5ZX 1XHNA 3VYAA 2OU5A 3TGVA 1Y12A 2GJGA 2NR4A 2ED4A 3NFWA 2QCKA 3R5ZA 4R82A 3BA3A 3SWJA 3FGEA 4N7RC 2L1TA 3KYFA 3DNHA 2ASFA 3ZOHA 4HMXA 1W3QA 2D5MA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1NRG A;  1USF A;  1JNW A;  2IG6 A;  3H96 A;  1YLN A;  1WLI A;  2HTI A;  4HMT A;  5ESC A;  2VPA A;  2HTD A;  3IN6 A;  2HHZ A;  3U35 A;  4HMU A;  3A6R A;  1G77 A;  3A20 A;  1CI0 A;  2X1J A;  1DNL A;  2OL5 A;  3VY2 A;  1WLK A;  2ECR A;  3ZOG A;  4HMW A;  2RDE A;  4IRA A;  3K86 A;  3U34 A;  4YWN A;  1G78 A;  1XXO A;  5CHO A;  3BPK A;  3U0I A;  3R5R A;  2PTF A;  1WV4 A;  3AWH A;  3DB0 A;  3R5P A;  4HMV A;  4L82 A;  4XJ2 A;  1RZ1 A;  3U5W A;  2I02 A;  2D38 A;  2FG9 A;  1USC A;  2A2J A;  1W3R A;  3ZOE A;  1EJE A;  4HMS A;  1TY9 A;  4ZKY A;  4Y9I A;  1G79 A;  2R6V A;  3ZOD A;  1FLM A;  1I0S A;  2Q9K A;  4Z85 A;  2IML A;  5CHE C;  3CB0 A;  3CP3 A;  3FKH A;  1AXJ A;  3PFT A;  3F7E A;  3RH7 A;  1W9A A;  3R5Y A;  1I0R A;  2IAB A;  1VL7 A;  2HQ9 A;  3B5M A;  4QVB A;  2HQ7 A;  3DMB A;  3A6Q A;  2AQ6 A;  3KYG A;  3ZOC A;  5BNC A;  4HX6 A;  3HMZ A;  1W3O A;  1RFE A;  2QEA A;  3BNK A;  1W3P A;  1G76 A;  2RE7 A;  3R5W A;  3HY8 A;  3K87 A;  4F07 A;  2X1K A;  1Y30 A;  4XHY A;  2R0X A;  2D37 A;  2I51 A;  5JAB A;  3ZOF A;  3R5L A;  1WGB A;  2FUR A;  1RZ0 A;  1YOA A;  3EC6 A;  1T9M A;  2ECU A;  2E83 A;  3AMF A;  3K88 A;  2D36 A;  3E4V A;  2ARZ A;  3GAS A;  4YBN A;  3VY5 A;  2FHQ A;  1XHN A;  3VYA A;  2OU5 A;  3TGV A;  2NR4 A;  2GJG A;  2ED4 A;  3NFW A;  2QCK A;  3R5Z A;  4R82 A;  3BA3 A;  3SWJ A;  3FGE A;  4N7R C;  3KYF A;  3DNH A;  2ASF A;  3ZOH A;  4HMX A;  1W3Q A;  2D5M A; 
#chains in the Genus database with same CATH topology
 1NRG A;  1USF A;  1JNW A;  2IG6 A;  3H96 A;  1YLN A;  1WLI A;  2HTI A;  4HMT A;  5ESC A;  2VPA A;  2HTD A;  3IN6 A;  2HHZ A;  3U35 A;  4HMU A;  3A6R A;  1G77 A;  3A20 A;  1CI0 A;  2GUJ A;  2X1J A;  1DNL A;  2OL5 A;  3VY2 A;  4MTK A;  4HKH A;  1WLK A;  2ECR A;  4W64 A;  4HMW A;  3ZOG A;  3EAA A;  2RDE A;  4IRA A;  3K86 A;  3U34 A;  4YWN A;  3V4H A;  1G78 A;  1XXO A;  5CHO A;  3BPK A;  3U0I A;  3R5R A;  2PTF A;  1WV4 A;  3AWH A;  3DB0 A;  3R5P A;  4HMV A;  4L82 A;  4XJ2 A;  1RZ1 A;  3U5W A;  2I02 A;  3HE1 A;  2D38 A;  2FG9 A;  1USC A;  2A2J A;  1W3R A;  3ZOE A;  1EJE A;  4HMS A;  4TV4 A;  1TY9 A;  4ZKY A;  4Y9I A;  1G79 A;  2R6V A;  3ZOD A;  1FLM A;  1I0S A;  2Q9K A;  4Z85 A;  2IML A;  5CHE C;  3CB0 A;  3CP3 A;  3FKH A;  4UHV A;  1AXJ A;  3PFT A;  3F7E A;  3RH7 A;  1W9A A;  3R5Y A;  1I0R A;  2IAB A;  1VL7 A;  2HQ9 A;  3B5M A;  4QVB A;  2HQ7 A;  3DMB A;  3A6Q A;  2AQ6 A;  3KYG A;  3ZOC A;  5BNC A;  4HX6 A;  3HMZ A;  1W3O A;  1RFE A;  2QEA A;  3BNK A;  1W3P A;  1G76 A;  2RE7 A;  3R5W A;  3HY8 A;  3K87 A;  4F07 A;  2X1K A;  1Y30 A;  4XHY A;  2R0X A;  2D37 A;  2I51 A;  5JAB A;  3ZOF A;  3R5L A;  1WGB A;  2FUR A;  1RZ0 A;  1YOA A;  2K4Q A;  3EC6 A;  1T9M A;  2ECU A;  2E83 A;  3AMF A;  3K88 A;  2D36 A;  3E4V A;  2ARZ A;  3GAS A;  4YBN A;  3VY5 A;  2FHQ A;  2P5Z X;  1XHN A;  3VYA A;  2OU5 A;  3TGV A;  1Y12 A;  2GJG A;  2NR4 A;  2ED4 A;  3NFW A;  2QCK A;  3R5Z A;  4R82 A;  3BA3 A;  3SWJ A;  3FGE A;  4N7R C;  2L1T A;  3KYF A;  3DNH A;  2ASF A;  3ZOH A;  4HMX A;  1W3Q A;  2D5M A; 
#chains in the Genus database with same CATH homology
 1NRG A;  1USF A;  1JNW A;  2IG6 A;  3H96 A;  1YLN A;  1WLI A;  2HTI A;  4HMT A;  5ESC A;  2VPA A;  2HTD A;  3IN6 A;  2HHZ A;  3U35 A;  4HMU A;  3A6R A;  1G77 A;  3A20 A;  1CI0 A;  2X1J A;  1DNL A;  2OL5 A;  3VY2 A;  1WLK A;  2ECR A;  3ZOG A;  4HMW A;  2RDE A;  4IRA A;  3K86 A;  3U34 A;  4YWN A;  1G78 A;  1XXO A;  5CHO A;  3BPK A;  3U0I A;  3R5R A;  2PTF A;  1WV4 A;  3AWH A;  3DB0 A;  3R5P A;  4HMV A;  4L82 A;  4XJ2 A;  1RZ1 A;  3U5W A;  2I02 A;  2D38 A;  2FG9 A;  1USC A;  2A2J A;  1W3R A;  3ZOE A;  1EJE A;  4HMS A;  1TY9 A;  4ZKY A;  4Y9I A;  1G79 A;  2R6V A;  3ZOD A;  1FLM A;  1I0S A;  2Q9K A;  4Z85 A;  2IML A;  5CHE C;  3CB0 A;  3CP3 A;  3FKH A;  1AXJ A;  3PFT A;  3F7E A;  3RH7 A;  1W9A A;  3R5Y A;  1I0R A;  2IAB A;  1VL7 A;  2HQ9 A;  3B5M A;  4QVB A;  2HQ7 A;  3DMB A;  3A6Q A;  2AQ6 A;  3KYG A;  3ZOC A;  5BNC A;  4HX6 A;  3HMZ A;  1W3O A;  1RFE A;  2QEA A;  3BNK A;  1W3P A;  1G76 A;  2RE7 A;  3R5W A;  3HY8 A;  3K87 A;  4F07 A;  2X1K A;  1Y30 A;  4XHY A;  2R0X A;  2D37 A;  2I51 A;  5JAB A;  3ZOF A;  3R5L A;  1WGB A;  2FUR A;  1RZ0 A;  1YOA A;  3EC6 A;  1T9M A;  2ECU A;  2E83 A;  3AMF A;  3K88 A;  2D36 A;  3E4V A;  2ARZ A;  3GAS A;  4YBN A;  3VY5 A;  2FHQ A;  1XHN A;  3VYA A;  2OU5 A;  3TGV A;  2NR4 A;  2GJG A;  2ED4 A;  3NFW A;  2QCK A;  3R5Z A;  4R82 A;  3BA3 A;  3SWJ A;  3FGE A;  4N7R C;  3KYF A;  3DNH A;  2ASF A;  3ZOH A;  4HMX A;  1W3Q A;  2D5M A;

5JABA
similar chains in the Genus database (40% sequence similarity)

None
similar chains in the pdb database (40% sequence similarity)

#similar chains in the Genus database (40% sequence similarity)
5JAB A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)

2ASFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations