2ASFA

Crystal structure of the conserved hypothetical protein rv2074 from mycobacterium tuberculosis 1.6 a
Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
125
structure length
125
Chain Sequence
SDDALAFLSERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGARWLSLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLGSADLLD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS7 (117-129)AH1 (12-18)AH3 (94-108)AH2 (60-68)TI1 (30-33)S2 (35-40)S3 (43-45)TIV1 (45-48)S4 (50-56)TI2 (46-49)S5 (70-77)TII1 (56-59)TII'1 (77-80)TI3 (114-117)S1 (24-29)S6 (80-91)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Mycobacterium tuberculosis
publication title The molecular structure of Rv2074, a probable pyridoxine 5'-phosphate oxidase from Mycobacterium tuberculosis, at 1.6 angstroms resolution.
pubmed doi rcsb
molecule keywords Hypothetical protein Rv2074
total genus 30
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2005-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2asfA00
1G78A 2QCKA 3A6QA 4XJ2A 3HMZA 3B5MA 1RZ0A 3H96A 3FGEA 4QVBA 3ZODA 3K87A 2OL5A 4R82A 1TY9A 1G76A 4HMTA 3F7EA 3DMBA 3FKHA 2HQ9A 4N7RC 2ECUA 4YBNA 1JNWA 2X1KA 3BNKA 3U5WA 3SWJA 3HY8A 1I0SA 3PFTA 2D36A 3CB0A 1WLKA 1WLIA 2X1JA 2IABA 1USCA 1W3PA 3U35A 3ZOEA 2I02A 2HTIA 3NFWA 2FG9A 2RE7A 2QEAA 1WV4A 1T9MA 3E4VA 3GASA 2D37A 4Z85A 5ESCA 3BPKA 2IMLA 1RZ1A 2NR4A 3RH7A 2PTFA 2I51A 3ZOGA 3BA3A 4HX6A 2HQ7A 3ZOHA 2ASFA 1NRGA 3R5YA 2VPAA 1VL7A 5CHEC 4HMSA 1DNLA 2ED4A 1RFEA 3R5WA 2HTDA 3AWHA 1FLMA 1Y30A 3R5ZA 2Q9KA 4HMUA 1G77A 2OU5A 2R6VA 1W3RA 2D38A 1G79A 3TGVA 2FURA 3R5PA 1EJEA 3U0IA 4XHYA 2ECRA 2D5MA 2HHZA 2ARZA 3DNHA 4IRAA 3DB0A 1AXJA 3ZOCA 4F07A 4YWNA 1W3OA 1WGBA 2E83A 3A20A 4L82A 3IN6A 3R5LA 5JABA 2A2JA 3VY5A 2AQ6A 3EC6A 4HMWA 3AMFA 1USFA 1I0RA 3K88A 3VYAA 3U34A 4HMXA 1XHNA 3KYGA 1YLNA 3R5RA 5BNCA 3KYFA 1YOAA 1W9AA 2R0XA 1W3QA 1CI0A 4ZKYA 4Y9IA 5CHOA 2IG6A 3K86A 2GJGA 2RDEA 3A6RA 4HMVA 3VY2A 3CP3A 3ZOFA 1XXOA 2FHQA
chains in the Genus database with same CATH superfamily
1G78A 4UHVA 2QCKA 3A6QA 4XJ2A 3HMZA 3B5MA 1RZ0A 3H96A 3FGEA 4QVBA 3ZODA 3K87A 2OL5A 4R82A 1TY9A 1G76A 4HMTA 3F7EA 3DMBA 3FKHA 2HQ9A 4N7RC 2ECUA 4YBNA 1JNWA 2X1KA 3BNKA 3U5WA 3SWJA 3HY8A 1I0SA 3PFTA 2D36A 3CB0A 1WLKA 1WLIA 2X1JA 2IABA 1USCA 1W3PA 3U35A 4TV4A 2GUJA 3ZOEA 2I02A 2HTIA 3NFWA 2FG9A 2RE7A 2QEAA 1WV4A 1T9MA 3E4VA 3GASA 2D37A 4Z85A 5ESCA 3BPKA 2IMLA 1RZ1A 2NR4A 3RH7A 2PTFA 3V4HA 2I51A 3ZOGA 3BA3A 4HX6A 2HQ7A 3ZOHA 4MTKA 2ASFA 1NRGA 3R5YA 2VPAA 3EAAA 1VL7A 5CHEC 4HMSA 1DNLA 2ED4A 1RFEA 3R5WA 2HTDA 3AWHA 1FLMA 1Y30A 3R5ZA 2Q9KA 4HMUA 1G77A 2OU5A 2R6VA 1W3RA 2D38A 1G79A 3TGVA 2FURA 3R5PA 1EJEA 3U0IA 4W64A 4XHYA 2ECRA 2D5MA 2HHZA 2ARZA 3DNHA 4IRAA 3DB0A 2P5ZX 1AXJA 3ZOCA 4F07A 4YWNA 1W3OA 1WGBA 2E83A 3A20A 4L82A 3IN6A 3R5LA 5JABA 2L1TA 4HKHA 2A2JA 1Y12A 3VY5A 2AQ6A 3EC6A 4HMWA 3AMFA 1USFA 1I0RA 3K88A 3VYAA 3U34A 4HMXA 1XHNA 3HE1A 3KYGA 1YLNA 3R5RA 5BNCA 3KYFA 1YOAA 1W9AA 2R0XA 1W3QA 1CI0A 4ZKYA 4Y9IA 5CHOA 2IG6A 3K86A 2GJGA 2K4QA 2RDEA 3A6RA 4HMVA 3VY2A 3CP3A 3ZOFA 1XXOA 2FHQA
chains in the Genus database with same CATH topology
1G78A 2QCKA 3A6QA 4XJ2A 3HMZA 3B5MA 1RZ0A 3H96A 3FGEA 4QVBA 3ZODA 3K87A 2OL5A 4R82A 1TY9A 1G76A 4HMTA 3F7EA 3DMBA 3FKHA 2HQ9A 4N7RC 2ECUA 4YBNA 1JNWA 2X1KA 3BNKA 3U5WA 3SWJA 3HY8A 1I0SA 3PFTA 2D36A 3CB0A 1WLKA 1WLIA 2X1JA 2IABA 1USCA 1W3PA 3U35A 3ZOEA 2I02A 2HTIA 3NFWA 2FG9A 2RE7A 2QEAA 1WV4A 1T9MA 3E4VA 3GASA 2D37A 4Z85A 5ESCA 3BPKA 2IMLA 1RZ1A 2NR4A 3RH7A 2PTFA 2I51A 3ZOGA 3BA3A 4HX6A 2HQ7A 3ZOHA 2ASFA 1NRGA 3R5YA 2VPAA 1VL7A 5CHEC 4HMSA 1DNLA 2ED4A 1RFEA 3R5WA 2HTDA 3AWHA 1FLMA 1Y30A 3R5ZA 2Q9KA 4HMUA 1G77A 2OU5A 2R6VA 1W3RA 2D38A 1G79A 3TGVA 2FURA 3R5PA 1EJEA 3U0IA 4XHYA 2ECRA 2D5MA 2HHZA 2ARZA 3DNHA 4IRAA 3DB0A 1AXJA 3ZOCA 4F07A 4YWNA 1W3OA 1WGBA 2E83A 3A20A 4L82A 3IN6A 3R5LA 5JABA 2A2JA 3VY5A 2AQ6A 3EC6A 4HMWA 3AMFA 1USFA 1I0RA 3K88A 3VYAA 3U34A 4HMXA 1XHNA 3KYGA 1YLNA 3R5RA 5BNCA 3KYFA 1YOAA 1W9AA 2R0XA 1W3QA 1CI0A 4ZKYA 4Y9IA 5CHOA 2IG6A 3K86A 2GJGA 2RDEA 3A6RA 4HMVA 3VY2A 3CP3A 3ZOFA 1XXOA 2FHQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G78 A;  2QCK A;  3A6Q A;  4XJ2 A;  3HMZ A;  3B5M A;  1RZ0 A;  3H96 A;  3FGE A;  4QVB A;  3ZOD A;  3K87 A;  2OL5 A;  4R82 A;  1TY9 A;  1G76 A;  4HMT A;  3F7E A;  3DMB A;  3FKH A;  2HQ9 A;  4N7R C;  2ECU A;  4YBN A;  1JNW A;  2X1K A;  3BNK A;  3U5W A;  3SWJ A;  3HY8 A;  1I0S A;  3PFT A;  2D36 A;  3CB0 A;  1WLK A;  1WLI A;  2X1J A;  2IAB A;  1USC A;  1W3P A;  3U35 A;  3ZOE A;  2I02 A;  2HTI A;  3NFW A;  2FG9 A;  2RE7 A;  2QEA A;  1WV4 A;  1T9M A;  3E4V A;  3GAS A;  2D37 A;  4Z85 A;  5ESC A;  3BPK A;  2IML A;  1RZ1 A;  2NR4 A;  3RH7 A;  2PTF A;  2I51 A;  3ZOG A;  3BA3 A;  4HX6 A;  2HQ7 A;  3ZOH A;  2ASF A;  1NRG A;  3R5Y A;  2VPA A;  1VL7 A;  5CHE C;  4HMS A;  1DNL A;  2ED4 A;  1RFE A;  3R5W A;  2HTD A;  3AWH A;  1FLM A;  1Y30 A;  3R5Z A;  2Q9K A;  4HMU A;  1G77 A;  2OU5 A;  2R6V A;  1W3R A;  2D38 A;  1G79 A;  3TGV A;  2FUR A;  3R5P A;  1EJE A;  3U0I A;  4XHY A;  2ECR A;  2D5M A;  2HHZ A;  2ARZ A;  3DNH A;  4IRA A;  3DB0 A;  1AXJ A;  3ZOC A;  4F07 A;  4YWN A;  1W3O A;  1WGB A;  2E83 A;  3A20 A;  4L82 A;  3IN6 A;  3R5L A;  5JAB A;  2A2J A;  3VY5 A;  2AQ6 A;  3EC6 A;  4HMW A;  3AMF A;  1USF A;  1I0R A;  3K88 A;  3VYA A;  3U34 A;  4HMX A;  1XHN A;  3KYG A;  1YLN A;  3R5R A;  5BNC A;  3KYF A;  1YOA A;  1W9A A;  2R0X A;  1W3Q A;  1CI0 A;  4ZKY A;  4Y9I A;  5CHO A;  2IG6 A;  3K86 A;  2GJG A;  2RDE A;  3A6R A;  4HMV A;  3VY2 A;  3CP3 A;  3ZOF A;  1XXO A;  2FHQ A; 
#chains in the Genus database with same CATH topology
 1G78 A;  4UHV A;  2QCK A;  3A6Q A;  4XJ2 A;  3HMZ A;  3B5M A;  1RZ0 A;  3H96 A;  3FGE A;  4QVB A;  3ZOD A;  3K87 A;  2OL5 A;  4R82 A;  1TY9 A;  1G76 A;  4HMT A;  3F7E A;  3DMB A;  3FKH A;  2HQ9 A;  4N7R C;  2ECU A;  4YBN A;  1JNW A;  2X1K A;  3BNK A;  3U5W A;  3SWJ A;  3HY8 A;  1I0S A;  3PFT A;  2D36 A;  3CB0 A;  1WLK A;  1WLI A;  2X1J A;  2IAB A;  1USC A;  1W3P A;  3U35 A;  4TV4 A;  2GUJ A;  3ZOE A;  2I02 A;  2HTI A;  3NFW A;  2FG9 A;  2RE7 A;  2QEA A;  1WV4 A;  1T9M A;  3E4V A;  3GAS A;  2D37 A;  4Z85 A;  5ESC A;  3BPK A;  2IML A;  1RZ1 A;  2NR4 A;  3RH7 A;  2PTF A;  3V4H A;  2I51 A;  3ZOG A;  3BA3 A;  4HX6 A;  2HQ7 A;  3ZOH A;  4MTK A;  2ASF A;  1NRG A;  3R5Y A;  2VPA A;  3EAA A;  1VL7 A;  5CHE C;  4HMS A;  1DNL A;  2ED4 A;  1RFE A;  3R5W A;  2HTD A;  3AWH A;  1FLM A;  1Y30 A;  3R5Z A;  2Q9K A;  4HMU A;  1G77 A;  2OU5 A;  2R6V A;  1W3R A;  2D38 A;  1G79 A;  3TGV A;  2FUR A;  3R5P A;  1EJE A;  3U0I A;  4W64 A;  4XHY A;  2ECR A;  2D5M A;  2HHZ A;  2ARZ A;  3DNH A;  4IRA A;  3DB0 A;  2P5Z X;  1AXJ A;  3ZOC A;  4F07 A;  4YWN A;  1W3O A;  1WGB A;  2E83 A;  3A20 A;  4L82 A;  3IN6 A;  3R5L A;  5JAB A;  2L1T A;  4HKH A;  2A2J A;  1Y12 A;  3VY5 A;  2AQ6 A;  3EC6 A;  4HMW A;  3AMF A;  1USF A;  1I0R A;  3K88 A;  3VYA A;  3U34 A;  4HMX A;  1XHN A;  3HE1 A;  3KYG A;  1YLN A;  3R5R A;  5BNC A;  3KYF A;  1YOA A;  1W9A A;  2R0X A;  1W3Q A;  1CI0 A;  4ZKY A;  4Y9I A;  5CHO A;  2IG6 A;  3K86 A;  2GJG A;  2K4Q A;  2RDE A;  3A6R A;  4HMV A;  3VY2 A;  3CP3 A;  3ZOF A;  1XXO A;  2FHQ A; 
#chains in the Genus database with same CATH homology
 1G78 A;  2QCK A;  3A6Q A;  4XJ2 A;  3HMZ A;  3B5M A;  1RZ0 A;  3H96 A;  3FGE A;  4QVB A;  3ZOD A;  3K87 A;  2OL5 A;  4R82 A;  1TY9 A;  1G76 A;  4HMT A;  3F7E A;  3DMB A;  3FKH A;  2HQ9 A;  4N7R C;  2ECU A;  4YBN A;  1JNW A;  2X1K A;  3BNK A;  3U5W A;  3SWJ A;  3HY8 A;  1I0S A;  3PFT A;  2D36 A;  3CB0 A;  1WLK A;  1WLI A;  2X1J A;  2IAB A;  1USC A;  1W3P A;  3U35 A;  3ZOE A;  2I02 A;  2HTI A;  3NFW A;  2FG9 A;  2RE7 A;  2QEA A;  1WV4 A;  1T9M A;  3E4V A;  3GAS A;  2D37 A;  4Z85 A;  5ESC A;  3BPK A;  2IML A;  1RZ1 A;  2NR4 A;  3RH7 A;  2PTF A;  2I51 A;  3ZOG A;  3BA3 A;  4HX6 A;  2HQ7 A;  3ZOH A;  2ASF A;  1NRG A;  3R5Y A;  2VPA A;  1VL7 A;  5CHE C;  4HMS A;  1DNL A;  2ED4 A;  1RFE A;  3R5W A;  2HTD A;  3AWH A;  1FLM A;  1Y30 A;  3R5Z A;  2Q9K A;  4HMU A;  1G77 A;  2OU5 A;  2R6V A;  1W3R A;  2D38 A;  1G79 A;  3TGV A;  2FUR A;  3R5P A;  1EJE A;  3U0I A;  4XHY A;  2ECR A;  2D5M A;  2HHZ A;  2ARZ A;  3DNH A;  4IRA A;  3DB0 A;  1AXJ A;  3ZOC A;  4F07 A;  4YWN A;  1W3O A;  1WGB A;  2E83 A;  3A20 A;  4L82 A;  3IN6 A;  3R5L A;  5JAB A;  2A2J A;  3VY5 A;  2AQ6 A;  3EC6 A;  4HMW A;  3AMF A;  1USF A;  1I0R A;  3K88 A;  3VYA A;  3U34 A;  4HMX A;  1XHN A;  3KYG A;  1YLN A;  3R5R A;  5BNC A;  3KYF A;  1YOA A;  1W9A A;  2R0X A;  1W3Q A;  1CI0 A;  4ZKY A;  4Y9I A;  5CHO A;  2IG6 A;  3K86 A;  2GJG A;  2RDE A;  3A6R A;  4HMV A;  3VY2 A;  3CP3 A;  3ZOF A;  1XXO A;  2FHQ A; 
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similar chains in the Genus database (?% sequence similarity)
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