2ASFA

Crystal structure of the conserved hypothetical protein rv2074 from mycobacterium tuberculosis 1.6 a
Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
125
structure length
125
Chain Sequence
SDDALAFLSERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGARWLSLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLGSADLLD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS7 (117-129)AH1 (12-18)AH3 (94-108)AH2 (60-68)TI1 (30-33)S2 (35-40)S3 (43-45)TIV1 (45-48)S4 (50-56)TI2 (46-49)S5 (70-77)TII1 (56-59)TII'1 (77-80)TI3 (114-117)S1 (24-29)S6 (80-91)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Mycobacterium tuberculosis
publication title The molecular structure of Rv2074, a probable pyridoxine 5'-phosphate oxidase from Mycobacterium tuberculosis, at 1.6 angstroms resolution.
pubmed doi rcsb
molecule keywords Hypothetical protein Rv2074
total genus 30
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2005-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2asfA00
3K88A 1W9AA 1USFA 5BNCA 4QVBA 4YBNA 2NR4A 1T9MA 4F07A 1EJEA 5CHEC 4ZKYA 2HQ7A 4HMWA 4L82A 2AQ6A 5CHOA 3SWJA 1RZ0A 3BA3A 3E4VA 2I02A 2RDEA 2PTFA 2HQ9A 1TY9A 3TGVA 3BPKA 3R5PA 3IN6A 2FURA 1XHNA 5JABA 4HMUA 1VL7A 3FKHA 3AWHA 3K87A 3K86A 3VY5A 3H96A 3A6QA 4Y9IA 2RE7A 3FGEA 3ZOCA 3U0IA 4HMXA 1WGBA 3CB0A 1YLNA 3BNKA 1WV4A 4HMVA 3RH7A 2IABA 3A20A 1JNWA 4R82A 3ZOGA 2ASFA 3U5WA 4YWNA 1G77A 4HMTA 1NRGA 2IMLA 2I51A 3ZOFA 3VYAA 3AMFA 2D37A 2QCKA 2IG6A 3KYFA 3DNHA 1RZ1A 3U34A 3ZODA 3R5WA 2R6VA 2ARZA 2ED4A 2OU5A 1RFEA 1WLKA 2GJGA 4IRAA 3F7EA 4HMSA 2FHQA 2HTIA 3R5LA 1WLIA 5ESCA 1G78A 2D36A 3R5RA 1CI0A 1W3RA 3A6RA 3HY8A 2FG9A 3CP3A 3ZOEA 3B5MA 2VPAA 3ZOHA 1G76A 1W3QA 3R5YA 4HX6A 1AXJA 2D5MA 2D38A 1I0SA 2A2JA 2X1KA 3PFTA 1XXOA 2R0XA 3HMZA 1I0RA 3GASA 3KYGA 1YOAA 1USCA 2OL5A 1FLMA 3DMBA 3R5ZA 1DNLA 4N7RC 3EC6A 1W3PA 3NFWA 3VY2A 2QEAA 2E83A 3DB0A 2X1JA 3U35A 1G79A 4XJ2A 1Y30A 1W3OA 2ECRA 2HTDA 4Z85A 2ECUA 4XHYA 2HHZA 2Q9KA
chains in the Genus database with same CATH superfamily
3K88A 2GUJA 1W9AA 3HE1A 4UHVA 1USFA 5BNCA 4TV4A 4QVBA 4YBNA 2NR4A 1T9MA 4F07A 1EJEA 5CHEC 4ZKYA 2HQ7A 4HMWA 4L82A 2AQ6A 5CHOA 3SWJA 1RZ0A 3BA3A 3E4VA 2I02A 2RDEA 2PTFA 4W64A 2HQ9A 1TY9A 3TGVA 3BPKA 3R5PA 3IN6A 2FURA 4HKHA 1XHNA 5JABA 4HMUA 1VL7A 3EAAA 3FKHA 3AWHA 4MTKA 3K87A 3K86A 3VY5A 3H96A 3A6QA 4Y9IA 2RE7A 3FGEA 3ZOCA 3U0IA 4HMXA 1WGBA 3CB0A 1YLNA 3BNKA 1WV4A 4HMVA 3RH7A 2IABA 3A20A 1JNWA 4R82A 3ZOGA 2ASFA 3U5WA 4YWNA 1G77A 4HMTA 1NRGA 2IMLA 2I51A 3ZOFA 3VYAA 3AMFA 2D37A 2QCKA 2IG6A 3KYFA 3DNHA 1RZ1A 3U34A 3ZODA 3R5WA 2R6VA 2ARZA 2ED4A 2OU5A 1RFEA 1WLKA 2GJGA 4IRAA 3F7EA 4HMSA 2P5ZX 2FHQA 2HTIA 3R5LA 1WLIA 5ESCA 1G78A 2D36A 3R5RA 1CI0A 1Y12A 1W3RA 3A6RA 3HY8A 2FG9A 3CP3A 3ZOEA 3B5MA 2VPAA 3ZOHA 1G76A 1W3QA 3R5YA 4HX6A 1AXJA 2L1TA 2D5MA 2D38A 1I0SA 2A2JA 2X1KA 3PFTA 1XXOA 2R0XA 3HMZA 1I0RA 3V4HA 3GASA 3KYGA 1YOAA 1USCA 2OL5A 1FLMA 3DMBA 3R5ZA 1DNLA 4N7RC 3EC6A 1W3PA 3NFWA 3VY2A 2QEAA 2E83A 3DB0A 2X1JA 3U35A 1G79A 4XJ2A 1Y30A 1W3OA 2ECRA 2HTDA 2K4QA 4Z85A 2ECUA 4XHYA 2HHZA 2Q9KA
chains in the Genus database with same CATH topology
3K88A 1W9AA 1USFA 5BNCA 4QVBA 4YBNA 2NR4A 1T9MA 4F07A 1EJEA 5CHEC 4ZKYA 2HQ7A 4HMWA 4L82A 2AQ6A 5CHOA 3SWJA 1RZ0A 3BA3A 3E4VA 2I02A 2RDEA 2PTFA 2HQ9A 1TY9A 3TGVA 3BPKA 3R5PA 3IN6A 2FURA 1XHNA 5JABA 4HMUA 1VL7A 3FKHA 3AWHA 3K87A 3K86A 3VY5A 3H96A 3A6QA 4Y9IA 2RE7A 3FGEA 3ZOCA 3U0IA 4HMXA 1WGBA 3CB0A 1YLNA 3BNKA 1WV4A 4HMVA 3RH7A 2IABA 3A20A 1JNWA 4R82A 3ZOGA 2ASFA 3U5WA 4YWNA 1G77A 4HMTA 1NRGA 2IMLA 2I51A 3ZOFA 3VYAA 3AMFA 2D37A 2QCKA 2IG6A 3KYFA 3DNHA 1RZ1A 3U34A 3ZODA 3R5WA 2R6VA 2ARZA 2ED4A 2OU5A 1RFEA 1WLKA 2GJGA 4IRAA 3F7EA 4HMSA 2FHQA 2HTIA 3R5LA 1WLIA 5ESCA 1G78A 2D36A 3R5RA 1CI0A 1W3RA 3A6RA 3HY8A 2FG9A 3CP3A 3ZOEA 3B5MA 2VPAA 3ZOHA 1G76A 1W3QA 3R5YA 4HX6A 1AXJA 2D5MA 2D38A 1I0SA 2A2JA 2X1KA 3PFTA 1XXOA 2R0XA 3HMZA 1I0RA 3GASA 3KYGA 1YOAA 1USCA 2OL5A 1FLMA 3DMBA 3R5ZA 1DNLA 4N7RC 3EC6A 1W3PA 3NFWA 3VY2A 2QEAA 2E83A 3DB0A 2X1JA 3U35A 1G79A 4XJ2A 1Y30A 1W3OA 2ECRA 2HTDA 4Z85A 2ECUA 4XHYA 2HHZA 2Q9KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K88 A;  1W9A A;  1USF A;  5BNC A;  4QVB A;  4YBN A;  2NR4 A;  1T9M A;  4F07 A;  1EJE A;  5CHE C;  4ZKY A;  2HQ7 A;  4HMW A;  4L82 A;  2AQ6 A;  5CHO A;  3SWJ A;  1RZ0 A;  3BA3 A;  3E4V A;  2I02 A;  2RDE A;  2PTF A;  2HQ9 A;  1TY9 A;  3TGV A;  3BPK A;  3R5P A;  3IN6 A;  2FUR A;  1XHN A;  5JAB A;  4HMU A;  1VL7 A;  3FKH A;  3AWH A;  3K87 A;  3K86 A;  3VY5 A;  3H96 A;  3A6Q A;  4Y9I A;  2RE7 A;  3FGE A;  3ZOC A;  3U0I A;  4HMX A;  1WGB A;  3CB0 A;  1YLN A;  3BNK A;  1WV4 A;  4HMV A;  3RH7 A;  2IAB A;  3A20 A;  1JNW A;  4R82 A;  3ZOG A;  2ASF A;  3U5W A;  4YWN A;  1G77 A;  4HMT A;  1NRG A;  2IML A;  2I51 A;  3ZOF A;  3VYA A;  3AMF A;  2D37 A;  2QCK A;  2IG6 A;  3KYF A;  3DNH A;  1RZ1 A;  3U34 A;  3ZOD A;  3R5W A;  2R6V A;  2ARZ A;  2ED4 A;  2OU5 A;  1RFE A;  1WLK A;  2GJG A;  4IRA A;  3F7E A;  4HMS A;  2FHQ A;  2HTI A;  3R5L A;  1WLI A;  5ESC A;  1G78 A;  2D36 A;  3R5R A;  1CI0 A;  1W3R A;  3A6R A;  3HY8 A;  2FG9 A;  3CP3 A;  3ZOE A;  3B5M A;  2VPA A;  3ZOH A;  1G76 A;  1W3Q A;  3R5Y A;  4HX6 A;  1AXJ A;  2D5M A;  2D38 A;  1I0S A;  2A2J A;  2X1K A;  3PFT A;  1XXO A;  2R0X A;  3HMZ A;  1I0R A;  3GAS A;  3KYG A;  1YOA A;  1USC A;  2OL5 A;  1FLM A;  3DMB A;  3R5Z A;  1DNL A;  4N7R C;  3EC6 A;  1W3P A;  3NFW A;  3VY2 A;  2QEA A;  2E83 A;  3DB0 A;  2X1J A;  3U35 A;  1G79 A;  4XJ2 A;  1Y30 A;  1W3O A;  2ECR A;  2HTD A;  4Z85 A;  2ECU A;  4XHY A;  2HHZ A;  2Q9K A; 
#chains in the Genus database with same CATH topology
 3K88 A;  2GUJ A;  1W9A A;  3HE1 A;  4UHV A;  1USF A;  5BNC A;  4TV4 A;  4QVB A;  4YBN A;  2NR4 A;  1T9M A;  4F07 A;  1EJE A;  5CHE C;  4ZKY A;  2HQ7 A;  4HMW A;  4L82 A;  2AQ6 A;  5CHO A;  3SWJ A;  1RZ0 A;  3BA3 A;  3E4V A;  2I02 A;  2RDE A;  2PTF A;  4W64 A;  2HQ9 A;  1TY9 A;  3TGV A;  3BPK A;  3R5P A;  3IN6 A;  2FUR A;  4HKH A;  1XHN A;  5JAB A;  4HMU A;  1VL7 A;  3EAA A;  3FKH A;  3AWH A;  4MTK A;  3K87 A;  3K86 A;  3VY5 A;  3H96 A;  3A6Q A;  4Y9I A;  2RE7 A;  3FGE A;  3ZOC A;  3U0I A;  4HMX A;  1WGB A;  3CB0 A;  1YLN A;  3BNK A;  1WV4 A;  4HMV A;  3RH7 A;  2IAB A;  3A20 A;  1JNW A;  4R82 A;  3ZOG A;  2ASF A;  3U5W A;  4YWN A;  1G77 A;  4HMT A;  1NRG A;  2IML A;  2I51 A;  3ZOF A;  3VYA A;  3AMF A;  2D37 A;  2QCK A;  2IG6 A;  3KYF A;  3DNH A;  1RZ1 A;  3U34 A;  3ZOD A;  3R5W A;  2R6V A;  2ARZ A;  2ED4 A;  2OU5 A;  1RFE A;  1WLK A;  2GJG A;  4IRA A;  3F7E A;  4HMS A;  2P5Z X;  2FHQ A;  2HTI A;  3R5L A;  1WLI A;  5ESC A;  1G78 A;  2D36 A;  3R5R A;  1CI0 A;  1Y12 A;  1W3R A;  3A6R A;  3HY8 A;  2FG9 A;  3CP3 A;  3ZOE A;  3B5M A;  2VPA A;  3ZOH A;  1G76 A;  1W3Q A;  3R5Y A;  4HX6 A;  1AXJ A;  2L1T A;  2D5M A;  2D38 A;  1I0S A;  2A2J A;  2X1K A;  3PFT A;  1XXO A;  2R0X A;  3HMZ A;  1I0R A;  3V4H A;  3GAS A;  3KYG A;  1YOA A;  1USC A;  2OL5 A;  1FLM A;  3DMB A;  3R5Z A;  1DNL A;  4N7R C;  3EC6 A;  1W3P A;  3NFW A;  3VY2 A;  2QEA A;  2E83 A;  3DB0 A;  2X1J A;  3U35 A;  1G79 A;  4XJ2 A;  1Y30 A;  1W3O A;  2ECR A;  2HTD A;  2K4Q A;  4Z85 A;  2ECU A;  4XHY A;  2HHZ A;  2Q9K A; 
#chains in the Genus database with same CATH homology
 3K88 A;  1W9A A;  1USF A;  5BNC A;  4QVB A;  4YBN A;  2NR4 A;  1T9M A;  4F07 A;  1EJE A;  5CHE C;  4ZKY A;  2HQ7 A;  4HMW A;  4L82 A;  2AQ6 A;  5CHO A;  3SWJ A;  1RZ0 A;  3BA3 A;  3E4V A;  2I02 A;  2RDE A;  2PTF A;  2HQ9 A;  1TY9 A;  3TGV A;  3BPK A;  3R5P A;  3IN6 A;  2FUR A;  1XHN A;  5JAB A;  4HMU A;  1VL7 A;  3FKH A;  3AWH A;  3K87 A;  3K86 A;  3VY5 A;  3H96 A;  3A6Q A;  4Y9I A;  2RE7 A;  3FGE A;  3ZOC A;  3U0I A;  4HMX A;  1WGB A;  3CB0 A;  1YLN A;  3BNK A;  1WV4 A;  4HMV A;  3RH7 A;  2IAB A;  3A20 A;  1JNW A;  4R82 A;  3ZOG A;  2ASF A;  3U5W A;  4YWN A;  1G77 A;  4HMT A;  1NRG A;  2IML A;  2I51 A;  3ZOF A;  3VYA A;  3AMF A;  2D37 A;  2QCK A;  2IG6 A;  3KYF A;  3DNH A;  1RZ1 A;  3U34 A;  3ZOD A;  3R5W A;  2R6V A;  2ARZ A;  2ED4 A;  2OU5 A;  1RFE A;  1WLK A;  2GJG A;  4IRA A;  3F7E A;  4HMS A;  2FHQ A;  2HTI A;  3R5L A;  1WLI A;  5ESC A;  1G78 A;  2D36 A;  3R5R A;  1CI0 A;  1W3R A;  3A6R A;  3HY8 A;  2FG9 A;  3CP3 A;  3ZOE A;  3B5M A;  2VPA A;  3ZOH A;  1G76 A;  1W3Q A;  3R5Y A;  4HX6 A;  1AXJ A;  2D5M A;  2D38 A;  1I0S A;  2A2J A;  2X1K A;  3PFT A;  1XXO A;  2R0X A;  3HMZ A;  1I0R A;  3GAS A;  3KYG A;  1YOA A;  1USC A;  2OL5 A;  1FLM A;  3DMB A;  3R5Z A;  1DNL A;  4N7R C;  3EC6 A;  1W3P A;  3NFW A;  3VY2 A;  2QEA A;  2E83 A;  3DB0 A;  2X1J A;  3U35 A;  1G79 A;  4XJ2 A;  1Y30 A;  1W3O A;  2ECR A;  2HTD A;  4Z85 A;  2ECU A;  4XHY A;  2HHZ A;  2Q9K A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.