2ASFA

Crystal structure of the conserved hypothetical protein rv2074 from mycobacterium tuberculosis 1.6 a
Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
125
structure length
125
Chain Sequence
SDDALAFLSERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGARWLSLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNPRRVVIEVQIERVLGSADLLD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS7 (117-129)AH1 (12-18)AH3 (94-108)AH2 (60-68)TI1 (30-33)S2 (35-40)S3 (43-45)TIV1 (45-48)S4 (50-56)TI2 (46-49)S5 (70-77)TII1 (56-59)TII'1 (77-80)TI3 (114-117)S1 (24-29)S6 (80-91)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Mycobacterium tuberculosis
publication title The molecular structure of Rv2074, a probable pyridoxine 5'-phosphate oxidase from Mycobacterium tuberculosis, at 1.6 angstroms resolution.
pubmed doi rcsb
molecule keywords Hypothetical protein Rv2074
total genus 30
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2005-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2asfA00
2ASFA 1XHNA 3TGVA 1W3QA 1T9MA 3R5WA 3ZOFA 3H96A 3DMBA 1W3OA 2QEAA 4Z85A 3A6QA 3AWHA 3HMZA 5CHOA 1EJEA 1RZ0A 5JABA 2HTDA 2RDEA 3VY5A 3R5YA 3DB0A 2VPAA 3KYGA 1WLKA 3HY8A 4N7RC 4QVBA 1USCA 2I02A 2D38A 2FURA 2R6VA 2ECRA 3K88A 2D36A 5BNCA 2NR4A 4HX6A 2ECUA 2ARZA 4HMVA 3R5ZA 1AXJA 4Y9IA 4XJ2A 4HMUA 3SWJA 3ZODA 3PFTA 1G76A 2D5MA 4XHYA 3BNKA 4F07A 3R5PA 3IN6A 3ZOEA 1W3RA 1W9AA 1NRGA 2IMLA 4HMXA 3GASA 1XXOA 2FHQA 2ED4A 3CB0A 1RFEA 2IG6A 3FKHA 2I51A 2RE7A 3VY2A 4HMWA 3U34A 4YBNA 3AMFA 3DNHA 1DNLA 3U0IA 2AQ6A 1G78A 2X1JA 1WV4A 3CP3A 3A6RA 2E83A 2Q9KA 3B5MA 3KYFA 3FGEA 4R82A 1I0SA 3E4VA 1JNWA 1I0RA 3NFWA 2OU5A 1CI0A 3VYAA 1TY9A 2X1KA 4HMSA 1W3PA 1Y30A 5ESCA 2HHZA 2R0XA 3F7EA 1VL7A 2D37A 3ZOCA 3U35A 4ZKYA 3BA3A 4YWNA 3RH7A 1FLMA 3ZOHA 2HQ9A 1G77A 2FG9A 3EC6A 3U5WA 2HTIA 3BPKA 1YLNA 4HMTA 3K87A 5CHEC 3K86A 2IABA 1WGBA 2A2JA 3ZOGA 1YOAA 2PTFA 3R5LA 2OL5A 2QCKA 1USFA 2HQ7A 4IRAA 1RZ1A 4L82A 1G79A 1WLIA 3A20A 3R5RA 2GJGA
chains in the Genus database with same CATH superfamily
2ASFA 1XHNA 3TGVA 1W3QA 1T9MA 3R5WA 3ZOFA 3H96A 3DMBA 1W3OA 2QEAA 4Z85A 3A6QA 2K4QA 3AWHA 3HE1A 3HMZA 5CHOA 1EJEA 1RZ0A 5JABA 2HTDA 2RDEA 3VY5A 3R5YA 3DB0A 2VPAA 3KYGA 1WLKA 3HY8A 4N7RC 4QVBA 1USCA 2I02A 2D38A 2FURA 2R6VA 2ECRA 3K88A 2D36A 5BNCA 2NR4A 4TV4A 4HX6A 2ECUA 2ARZA 4HMVA 3R5ZA 1AXJA 4Y9IA 4XJ2A 4HMUA 3SWJA 2GUJA 3ZODA 3PFTA 1G76A 2D5MA 4XHYA 3BNKA 4F07A 4HKHA 3R5PA 3IN6A 3ZOEA 1W3RA 1W9AA 1NRGA 2IMLA 4HMXA 3GASA 1XXOA 2FHQA 2ED4A 3CB0A 1RFEA 2IG6A 3FKHA 2I51A 2RE7A 3VY2A 4HMWA 3U34A 4YBNA 3AMFA 3DNHA 1DNLA 3U0IA 2AQ6A 1G78A 2X1JA 1WV4A 3EAAA 3CP3A 3A6RA 4MTKA 2E83A 4W64A 2Q9KA 3B5MA 3KYFA 3FGEA 4R82A 1I0SA 3E4VA 1JNWA 1I0RA 3NFWA 2OU5A 1CI0A 3VYAA 1TY9A 2X1KA 4HMSA 1W3PA 1Y30A 4UHVA 5ESCA 2HHZA 2R0XA 3F7EA 1VL7A 2D37A 3ZOCA 1Y12A 3U35A 4ZKYA 3BA3A 4YWNA 3RH7A 1FLMA 3ZOHA 2HQ9A 1G77A 2FG9A 3EC6A 3U5WA 2HTIA 2L1TA 3BPKA 1YLNA 4HMTA 3K87A 5CHEC 3V4HA 3K86A 2IABA 1WGBA 2A2JA 3ZOGA 1YOAA 2P5ZX 2PTFA 3R5LA 2OL5A 2QCKA 1USFA 2HQ7A 4IRAA 1RZ1A 4L82A 1G79A 1WLIA 3A20A 3R5RA 2GJGA
chains in the Genus database with same CATH topology
2ASFA 1XHNA 3TGVA 1W3QA 1T9MA 3R5WA 3ZOFA 3H96A 3DMBA 1W3OA 2QEAA 4Z85A 3A6QA 3AWHA 3HMZA 5CHOA 1EJEA 1RZ0A 5JABA 2HTDA 2RDEA 3VY5A 3R5YA 3DB0A 2VPAA 3KYGA 1WLKA 3HY8A 4N7RC 4QVBA 1USCA 2I02A 2D38A 2FURA 2R6VA 2ECRA 3K88A 2D36A 5BNCA 2NR4A 4HX6A 2ECUA 2ARZA 4HMVA 3R5ZA 1AXJA 4Y9IA 4XJ2A 4HMUA 3SWJA 3ZODA 3PFTA 1G76A 2D5MA 4XHYA 3BNKA 4F07A 3R5PA 3IN6A 3ZOEA 1W3RA 1W9AA 1NRGA 2IMLA 4HMXA 3GASA 1XXOA 2FHQA 2ED4A 3CB0A 1RFEA 2IG6A 3FKHA 2I51A 2RE7A 3VY2A 4HMWA 3U34A 4YBNA 3AMFA 3DNHA 1DNLA 3U0IA 2AQ6A 1G78A 2X1JA 1WV4A 3CP3A 3A6RA 2E83A 2Q9KA 3B5MA 3KYFA 3FGEA 4R82A 1I0SA 3E4VA 1JNWA 1I0RA 3NFWA 2OU5A 1CI0A 3VYAA 1TY9A 2X1KA 4HMSA 1W3PA 1Y30A 5ESCA 2HHZA 2R0XA 3F7EA 1VL7A 2D37A 3ZOCA 3U35A 4ZKYA 3BA3A 4YWNA 3RH7A 1FLMA 3ZOHA 2HQ9A 1G77A 2FG9A 3EC6A 3U5WA 2HTIA 3BPKA 1YLNA 4HMTA 3K87A 5CHEC 3K86A 2IABA 1WGBA 2A2JA 3ZOGA 1YOAA 2PTFA 3R5LA 2OL5A 2QCKA 1USFA 2HQ7A 4IRAA 1RZ1A 4L82A 1G79A 1WLIA 3A20A 3R5RA 2GJGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ASF A;  1XHN A;  3TGV A;  1W3Q A;  1T9M A;  3R5W A;  3ZOF A;  3H96 A;  3DMB A;  1W3O A;  2QEA A;  4Z85 A;  3A6Q A;  3AWH A;  3HMZ A;  5CHO A;  1EJE A;  1RZ0 A;  5JAB A;  2HTD A;  2RDE A;  3VY5 A;  3R5Y A;  3DB0 A;  2VPA A;  3KYG A;  1WLK A;  3HY8 A;  4N7R C;  4QVB A;  1USC A;  2I02 A;  2D38 A;  2FUR A;  2R6V A;  2ECR A;  3K88 A;  2D36 A;  5BNC A;  2NR4 A;  4HX6 A;  2ECU A;  2ARZ A;  4HMV A;  3R5Z A;  1AXJ A;  4Y9I A;  4XJ2 A;  4HMU A;  3SWJ A;  3ZOD A;  3PFT A;  1G76 A;  2D5M A;  4XHY A;  3BNK A;  4F07 A;  3R5P A;  3IN6 A;  3ZOE A;  1W3R A;  1W9A A;  1NRG A;  2IML A;  4HMX A;  3GAS A;  1XXO A;  2FHQ A;  2ED4 A;  3CB0 A;  1RFE A;  2IG6 A;  3FKH A;  2I51 A;  2RE7 A;  3VY2 A;  4HMW A;  3U34 A;  4YBN A;  3AMF A;  3DNH A;  1DNL A;  3U0I A;  2AQ6 A;  1G78 A;  2X1J A;  1WV4 A;  3CP3 A;  3A6R A;  2E83 A;  2Q9K A;  3B5M A;  3KYF A;  3FGE A;  4R82 A;  1I0S A;  3E4V A;  1JNW A;  1I0R A;  3NFW A;  2OU5 A;  1CI0 A;  3VYA A;  1TY9 A;  2X1K A;  4HMS A;  1W3P A;  1Y30 A;  5ESC A;  2HHZ A;  2R0X A;  3F7E A;  1VL7 A;  2D37 A;  3ZOC A;  3U35 A;  4ZKY A;  3BA3 A;  4YWN A;  3RH7 A;  1FLM A;  3ZOH A;  2HQ9 A;  1G77 A;  2FG9 A;  3EC6 A;  3U5W A;  2HTI A;  3BPK A;  1YLN A;  4HMT A;  3K87 A;  5CHE C;  3K86 A;  2IAB A;  1WGB A;  2A2J A;  3ZOG A;  1YOA A;  2PTF A;  3R5L A;  2OL5 A;  2QCK A;  1USF A;  2HQ7 A;  4IRA A;  1RZ1 A;  4L82 A;  1G79 A;  1WLI A;  3A20 A;  3R5R A;  2GJG A; 
#chains in the Genus database with same CATH topology
 2ASF A;  1XHN A;  3TGV A;  1W3Q A;  1T9M A;  3R5W A;  3ZOF A;  3H96 A;  3DMB A;  1W3O A;  2QEA A;  4Z85 A;  3A6Q A;  2K4Q A;  3AWH A;  3HE1 A;  3HMZ A;  5CHO A;  1EJE A;  1RZ0 A;  5JAB A;  2HTD A;  2RDE A;  3VY5 A;  3R5Y A;  3DB0 A;  2VPA A;  3KYG A;  1WLK A;  3HY8 A;  4N7R C;  4QVB A;  1USC A;  2I02 A;  2D38 A;  2FUR A;  2R6V A;  2ECR A;  3K88 A;  2D36 A;  5BNC A;  2NR4 A;  4TV4 A;  4HX6 A;  2ECU A;  2ARZ A;  4HMV A;  3R5Z A;  1AXJ A;  4Y9I A;  4XJ2 A;  4HMU A;  3SWJ A;  2GUJ A;  3ZOD A;  3PFT A;  1G76 A;  2D5M A;  4XHY A;  3BNK A;  4F07 A;  4HKH A;  3R5P A;  3IN6 A;  3ZOE A;  1W3R A;  1W9A A;  1NRG A;  2IML A;  4HMX A;  3GAS A;  1XXO A;  2FHQ A;  2ED4 A;  3CB0 A;  1RFE A;  2IG6 A;  3FKH A;  2I51 A;  2RE7 A;  3VY2 A;  4HMW A;  3U34 A;  4YBN A;  3AMF A;  3DNH A;  1DNL A;  3U0I A;  2AQ6 A;  1G78 A;  2X1J A;  1WV4 A;  3EAA A;  3CP3 A;  3A6R A;  4MTK A;  2E83 A;  4W64 A;  2Q9K A;  3B5M A;  3KYF A;  3FGE A;  4R82 A;  1I0S A;  3E4V A;  1JNW A;  1I0R A;  3NFW A;  2OU5 A;  1CI0 A;  3VYA A;  1TY9 A;  2X1K A;  4HMS A;  1W3P A;  1Y30 A;  4UHV A;  5ESC A;  2HHZ A;  2R0X A;  3F7E A;  1VL7 A;  2D37 A;  3ZOC A;  1Y12 A;  3U35 A;  4ZKY A;  3BA3 A;  4YWN A;  3RH7 A;  1FLM A;  3ZOH A;  2HQ9 A;  1G77 A;  2FG9 A;  3EC6 A;  3U5W A;  2HTI A;  2L1T A;  3BPK A;  1YLN A;  4HMT A;  3K87 A;  5CHE C;  3V4H A;  3K86 A;  2IAB A;  1WGB A;  2A2J A;  3ZOG A;  1YOA A;  2P5Z X;  2PTF A;  3R5L A;  2OL5 A;  2QCK A;  1USF A;  2HQ7 A;  4IRA A;  1RZ1 A;  4L82 A;  1G79 A;  1WLI A;  3A20 A;  3R5R A;  2GJG A; 
#chains in the Genus database with same CATH homology
 2ASF A;  1XHN A;  3TGV A;  1W3Q A;  1T9M A;  3R5W A;  3ZOF A;  3H96 A;  3DMB A;  1W3O A;  2QEA A;  4Z85 A;  3A6Q A;  3AWH A;  3HMZ A;  5CHO A;  1EJE A;  1RZ0 A;  5JAB A;  2HTD A;  2RDE A;  3VY5 A;  3R5Y A;  3DB0 A;  2VPA A;  3KYG A;  1WLK A;  3HY8 A;  4N7R C;  4QVB A;  1USC A;  2I02 A;  2D38 A;  2FUR A;  2R6V A;  2ECR A;  3K88 A;  2D36 A;  5BNC A;  2NR4 A;  4HX6 A;  2ECU A;  2ARZ A;  4HMV A;  3R5Z A;  1AXJ A;  4Y9I A;  4XJ2 A;  4HMU A;  3SWJ A;  3ZOD A;  3PFT A;  1G76 A;  2D5M A;  4XHY A;  3BNK A;  4F07 A;  3R5P A;  3IN6 A;  3ZOE A;  1W3R A;  1W9A A;  1NRG A;  2IML A;  4HMX A;  3GAS A;  1XXO A;  2FHQ A;  2ED4 A;  3CB0 A;  1RFE A;  2IG6 A;  3FKH A;  2I51 A;  2RE7 A;  3VY2 A;  4HMW A;  3U34 A;  4YBN A;  3AMF A;  3DNH A;  1DNL A;  3U0I A;  2AQ6 A;  1G78 A;  2X1J A;  1WV4 A;  3CP3 A;  3A6R A;  2E83 A;  2Q9K A;  3B5M A;  3KYF A;  3FGE A;  4R82 A;  1I0S A;  3E4V A;  1JNW A;  1I0R A;  3NFW A;  2OU5 A;  1CI0 A;  3VYA A;  1TY9 A;  2X1K A;  4HMS A;  1W3P A;  1Y30 A;  5ESC A;  2HHZ A;  2R0X A;  3F7E A;  1VL7 A;  2D37 A;  3ZOC A;  3U35 A;  4ZKY A;  3BA3 A;  4YWN A;  3RH7 A;  1FLM A;  3ZOH A;  2HQ9 A;  1G77 A;  2FG9 A;  3EC6 A;  3U5W A;  2HTI A;  3BPK A;  1YLN A;  4HMT A;  3K87 A;  5CHE C;  3K86 A;  2IAB A;  1WGB A;  2A2J A;  3ZOG A;  1YOA A;  2PTF A;  3R5L A;  2OL5 A;  2QCK A;  1USF A;  2HQ7 A;  4IRA A;  1RZ1 A;  4L82 A;  1G79 A;  1WLI A;  3A20 A;  3R5R A;  2GJG A; 
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similar chains in the Genus database (?% sequence similarity)
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