2D38A

The crystal structure of flavin reductase hpac complexed with nadp+
Total Genus 37

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
156
structure length
156
Chain Sequence
MAEVIKSIMRKFPLGVAIVTTNWKGELVGMTVNTFNSLSLNPPLVSFFADRMKGNDIPYKESKYFVVNFTDNEELFNIFALKPVKERFREIKYKEGIGGCPILYDSYAYIEAKLYDTIDVGDHSIIVGEVIDGYQIRDNFTPLVYMNRKYYKLSSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (14-15)S11 (143-146)S2 (17-23)S8 (101-103)TIV1 (22-25)3H2 (97-99)S5 (44-50)TIV2 (32-35)S4 (36-39)TVIII1 (39-42)S10 (123-135)TIV3 (40-43)TI1 (50-53)AH2 (55-61)TI2 (51-54)S9 (106-120)EMPTYS6 (64-70)TI5 (103-106)TI3 (86-89)TIV4 (87-90)3H1 (84-86)S7 (93-95)TII'1 (120-123)S12 (149-152)TIV6 (145-148)AH1 (1-10)AH3 (73-81)S3 (26-32)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Sulfolobus tokodaii
publication title Crystal structures of the short-chain flavin reductase HpaC from Sulfolobus tokodaii strain 7 in its three states: NAD(P)(+)(-)free, NAD(+)(-)bound, and NADP(+)(-)bound
pubmed doi rcsb
molecule keywords hypothetical NADH-dependent FMN oxidoreductase
total genus 37
structure length 156
sequence length 156
ec nomenclature ec 1.6.8.-:
pdb deposition date 2005-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01613 Flavin_Reduct Flavin reductase like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2d38A00
2HQ7A 1EJEA 1JNWA 1G79A 3R5YA 3A6RA 2FURA 1W3QA 3AMFA 5CHOA 1XXOA 1YLNA 2X1KA 3HY8A 4L82A 1TY9A 2R0XA 2D36A 3A20A 3CP3A 4IRAA 2AQ6A 2E83A 2ED4A 3K86A 3FKHA 1WLKA 3IN6A 1USCA 3U5WA 1RZ1A 2HQ9A 3R5WA 2IG6A 1G77A 4F07A 2FHQA 3GASA 2PTFA 5JABA 3B5MA 3BA3A 4HMXA 2GJGA 5ESCA 4R82A 3KYGA 2ASFA 2IABA 3R5LA 3DMBA 1W3RA 3ZOGA 3ZOCA 4HMWA 1RZ0A 3A6QA 5BNCA 1T9MA 2OU5A 1W9AA 3NFWA 1G76A 4XHYA 2FG9A 1DNLA 2HTIA 2ECUA 2I02A 1Y30A 4N7RC 2NR4A 3K87A 4YBNA 3R5PA 1YOAA 3ZOEA 2RE7A 2Q9KA 3DB0A 4XJ2A 3VY2A 3ZOFA 3PFTA 2QCKA 3SWJA 3BNKA 4HX6A 5CHEC 1AXJA 1RFEA 2X1JA 1WV4A 3BPKA 3EC6A 4HMVA 4ZKYA 3ZODA 2HHZA 2RDEA 3F7EA 1WLIA 1I0RA 2VPAA 1W3PA 4HMTA 3HMZA 3U0IA 4Y9IA 3R5ZA 4HMSA 3E4VA 2QEAA 3U34A 3KYFA 3H96A 3VY5A 2D37A 1WGBA 1FLMA 1XHNA 3ZOHA 2A2JA 4YWNA 2D38A 4HMUA 3U35A 2OL5A 1VL7A 3DNHA 4QVBA 3AWHA 1CI0A 2R6VA 1W3OA 3VYAA 3TGVA 1I0SA 2D5MA 2ARZA 3RH7A 1USFA 2I51A 1G78A 2IMLA 1NRGA 2HTDA 2ECRA 3K88A 3CB0A 4Z85A 3R5RA 3FGEA
chains in the Genus database with same CATH superfamily
2HQ7A 1EJEA 1JNWA 4TV4A 1G79A 3R5YA 3A6RA 2FURA 1W3QA 3AMFA 5CHOA 1XXOA 1YLNA 2X1KA 3HY8A 4L82A 1TY9A 2R0XA 2D36A 3A20A 3CP3A 4IRAA 2AQ6A 2K4QA 2E83A 2ED4A 3K86A 4W64A 3FKHA 1WLKA 3IN6A 1USCA 3U5WA 1RZ1A 2HQ9A 3R5WA 2IG6A 1G77A 4F07A 2FHQA 3GASA 2PTFA 5JABA 1Y12A 3B5MA 3BA3A 4HMXA 2GJGA 5ESCA 4R82A 3KYGA 4MTKA 2ASFA 2IABA 3R5LA 3DMBA 1W3RA 3ZOGA 3ZOCA 4HMWA 1RZ0A 3A6QA 5BNCA 2OU5A 1T9MA 1W9AA 3NFWA 1G76A 4XHYA 2FG9A 1DNLA 2HTIA 2ECUA 2I02A 1Y30A 4N7RC 2GUJA 2NR4A 3K87A 4YBNA 3R5PA 1YOAA 3ZOEA 2RE7A 2Q9KA 3DB0A 4XJ2A 3VY2A 3ZOFA 3EAAA 3PFTA 2QCKA 3SWJA 3BNKA 4HX6A 5CHEC 1AXJA 1RFEA 2X1JA 1WV4A 3BPKA 3EC6A 4HMVA 4ZKYA 3ZODA 2HHZA 2RDEA 3F7EA 1WLIA 4HKHA 1I0RA 2VPAA 1W3PA 4HMTA 3HMZA 3U0IA 4Y9IA 3R5ZA 4HMSA 3E4VA 2QEAA 3U34A 3KYFA 3H96A 3VY5A 2D37A 1WGBA 3V4HA 1FLMA 1XHNA 3ZOHA 2A2JA 4YWNA 2L1TA 2D38A 4HMUA 3U35A 2OL5A 1VL7A 3DNHA 4QVBA 3AWHA 1CI0A 2R6VA 1W3OA 3VYAA 3TGVA 2P5ZX 1I0SA 2D5MA 2ARZA 3RH7A 4UHVA 1USFA 2I51A 1G78A 2IMLA 1NRGA 2HTDA 2ECRA 3K88A 3HE1A 3CB0A 4Z85A 3R5RA 3FGEA
chains in the Genus database with same CATH topology
2HQ7A 1EJEA 1JNWA 1G79A 3R5YA 3A6RA 2FURA 1W3QA 3AMFA 5CHOA 1XXOA 1YLNA 2X1KA 3HY8A 4L82A 1TY9A 2R0XA 2D36A 3A20A 3CP3A 4IRAA 2AQ6A 2E83A 2ED4A 3K86A 3FKHA 1WLKA 3IN6A 1USCA 3U5WA 1RZ1A 2HQ9A 3R5WA 2IG6A 1G77A 4F07A 2FHQA 3GASA 2PTFA 5JABA 3B5MA 3BA3A 4HMXA 2GJGA 5ESCA 4R82A 3KYGA 2ASFA 2IABA 3R5LA 3DMBA 1W3RA 3ZOGA 3ZOCA 4HMWA 1RZ0A 3A6QA 5BNCA 1T9MA 2OU5A 1W9AA 3NFWA 1G76A 4XHYA 2FG9A 1DNLA 2HTIA 2ECUA 2I02A 1Y30A 4N7RC 2NR4A 3K87A 4YBNA 3R5PA 1YOAA 3ZOEA 2RE7A 2Q9KA 3DB0A 4XJ2A 3VY2A 3ZOFA 3PFTA 2QCKA 3SWJA 3BNKA 4HX6A 5CHEC 1AXJA 1RFEA 2X1JA 1WV4A 3BPKA 3EC6A 4HMVA 4ZKYA 3ZODA 2HHZA 2RDEA 3F7EA 1WLIA 1I0RA 2VPAA 1W3PA 4HMTA 3HMZA 3U0IA 4Y9IA 3R5ZA 4HMSA 3E4VA 2QEAA 3U34A 3KYFA 3H96A 3VY5A 2D37A 1WGBA 1FLMA 1XHNA 3ZOHA 2A2JA 4YWNA 2D38A 4HMUA 3U35A 2OL5A 1VL7A 3DNHA 4QVBA 3AWHA 1CI0A 2R6VA 1W3OA 3VYAA 3TGVA 1I0SA 2D5MA 2ARZA 3RH7A 1USFA 2I51A 1G78A 2IMLA 1NRGA 2HTDA 2ECRA 3K88A 3CB0A 4Z85A 3R5RA 3FGEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HQ7 A;  1EJE A;  1JNW A;  1G79 A;  3R5Y A;  3A6R A;  2FUR A;  1W3Q A;  3AMF A;  5CHO A;  1XXO A;  1YLN A;  2X1K A;  3HY8 A;  4L82 A;  1TY9 A;  2R0X A;  2D36 A;  3A20 A;  3CP3 A;  4IRA A;  2AQ6 A;  2E83 A;  2ED4 A;  3K86 A;  3FKH A;  1WLK A;  3IN6 A;  1USC A;  3U5W A;  1RZ1 A;  2HQ9 A;  3R5W A;  2IG6 A;  1G77 A;  4F07 A;  2FHQ A;  3GAS A;  2PTF A;  5JAB A;  3B5M A;  3BA3 A;  4HMX A;  2GJG A;  5ESC A;  4R82 A;  3KYG A;  2ASF A;  2IAB A;  3R5L A;  3DMB A;  1W3R A;  3ZOG A;  3ZOC A;  4HMW A;  1RZ0 A;  3A6Q A;  5BNC A;  1T9M A;  2OU5 A;  1W9A A;  3NFW A;  1G76 A;  4XHY A;  2FG9 A;  1DNL A;  2HTI A;  2ECU A;  2I02 A;  1Y30 A;  4N7R C;  2NR4 A;  3K87 A;  4YBN A;  3R5P A;  1YOA A;  3ZOE A;  2RE7 A;  2Q9K A;  3DB0 A;  4XJ2 A;  3VY2 A;  3ZOF A;  3PFT A;  2QCK A;  3SWJ A;  3BNK A;  4HX6 A;  5CHE C;  1AXJ A;  1RFE A;  2X1J A;  1WV4 A;  3BPK A;  3EC6 A;  4HMV A;  4ZKY A;  3ZOD A;  2HHZ A;  2RDE A;  3F7E A;  1WLI A;  1I0R A;  2VPA A;  1W3P A;  4HMT A;  3HMZ A;  3U0I A;  4Y9I A;  3R5Z A;  4HMS A;  3E4V A;  2QEA A;  3U34 A;  3KYF A;  3H96 A;  3VY5 A;  2D37 A;  1WGB A;  1FLM A;  1XHN A;  3ZOH A;  2A2J A;  4YWN A;  2D38 A;  4HMU A;  3U35 A;  2OL5 A;  1VL7 A;  3DNH A;  4QVB A;  3AWH A;  1CI0 A;  2R6V A;  1W3O A;  3VYA A;  3TGV A;  1I0S A;  2D5M A;  2ARZ A;  3RH7 A;  1USF A;  2I51 A;  1G78 A;  2IML A;  1NRG A;  2HTD A;  2ECR A;  3K88 A;  3CB0 A;  4Z85 A;  3R5R A;  3FGE A; 
#chains in the Genus database with same CATH topology
 2HQ7 A;  1EJE A;  1JNW A;  4TV4 A;  1G79 A;  3R5Y A;  3A6R A;  2FUR A;  1W3Q A;  3AMF A;  5CHO A;  1XXO A;  1YLN A;  2X1K A;  3HY8 A;  4L82 A;  1TY9 A;  2R0X A;  2D36 A;  3A20 A;  3CP3 A;  4IRA A;  2AQ6 A;  2K4Q A;  2E83 A;  2ED4 A;  3K86 A;  4W64 A;  3FKH A;  1WLK A;  3IN6 A;  1USC A;  3U5W A;  1RZ1 A;  2HQ9 A;  3R5W A;  2IG6 A;  1G77 A;  4F07 A;  2FHQ A;  3GAS A;  2PTF A;  5JAB A;  1Y12 A;  3B5M A;  3BA3 A;  4HMX A;  2GJG A;  5ESC A;  4R82 A;  3KYG A;  4MTK A;  2ASF A;  2IAB A;  3R5L A;  3DMB A;  1W3R A;  3ZOG A;  3ZOC A;  4HMW A;  1RZ0 A;  3A6Q A;  5BNC A;  2OU5 A;  1T9M A;  1W9A A;  3NFW A;  1G76 A;  4XHY A;  2FG9 A;  1DNL A;  2HTI A;  2ECU A;  2I02 A;  1Y30 A;  4N7R C;  2GUJ A;  2NR4 A;  3K87 A;  4YBN A;  3R5P A;  1YOA A;  3ZOE A;  2RE7 A;  2Q9K A;  3DB0 A;  4XJ2 A;  3VY2 A;  3ZOF A;  3EAA A;  3PFT A;  2QCK A;  3SWJ A;  3BNK A;  4HX6 A;  5CHE C;  1AXJ A;  1RFE A;  2X1J A;  1WV4 A;  3BPK A;  3EC6 A;  4HMV A;  4ZKY A;  3ZOD A;  2HHZ A;  2RDE A;  3F7E A;  1WLI A;  4HKH A;  1I0R A;  2VPA A;  1W3P A;  4HMT A;  3HMZ A;  3U0I A;  4Y9I A;  3R5Z A;  4HMS A;  3E4V A;  2QEA A;  3U34 A;  3KYF A;  3H96 A;  3VY5 A;  2D37 A;  1WGB A;  3V4H A;  1FLM A;  1XHN A;  3ZOH A;  2A2J A;  4YWN A;  2L1T A;  2D38 A;  4HMU A;  3U35 A;  2OL5 A;  1VL7 A;  3DNH A;  4QVB A;  3AWH A;  1CI0 A;  2R6V A;  1W3O A;  3VYA A;  3TGV A;  2P5Z X;  1I0S A;  2D5M A;  2ARZ A;  3RH7 A;  4UHV A;  1USF A;  2I51 A;  1G78 A;  2IML A;  1NRG A;  2HTD A;  2ECR A;  3K88 A;  3HE1 A;  3CB0 A;  4Z85 A;  3R5R A;  3FGE A; 
#chains in the Genus database with same CATH homology
 2HQ7 A;  1EJE A;  1JNW A;  1G79 A;  3R5Y A;  3A6R A;  2FUR A;  1W3Q A;  3AMF A;  5CHO A;  1XXO A;  1YLN A;  2X1K A;  3HY8 A;  4L82 A;  1TY9 A;  2R0X A;  2D36 A;  3A20 A;  3CP3 A;  4IRA A;  2AQ6 A;  2E83 A;  2ED4 A;  3K86 A;  3FKH A;  1WLK A;  3IN6 A;  1USC A;  3U5W A;  1RZ1 A;  2HQ9 A;  3R5W A;  2IG6 A;  1G77 A;  4F07 A;  2FHQ A;  3GAS A;  2PTF A;  5JAB A;  3B5M A;  3BA3 A;  4HMX A;  2GJG A;  5ESC A;  4R82 A;  3KYG A;  2ASF A;  2IAB A;  3R5L A;  3DMB A;  1W3R A;  3ZOG A;  3ZOC A;  4HMW A;  1RZ0 A;  3A6Q A;  5BNC A;  1T9M A;  2OU5 A;  1W9A A;  3NFW A;  1G76 A;  4XHY A;  2FG9 A;  1DNL A;  2HTI A;  2ECU A;  2I02 A;  1Y30 A;  4N7R C;  2NR4 A;  3K87 A;  4YBN A;  3R5P A;  1YOA A;  3ZOE A;  2RE7 A;  2Q9K A;  3DB0 A;  4XJ2 A;  3VY2 A;  3ZOF A;  3PFT A;  2QCK A;  3SWJ A;  3BNK A;  4HX6 A;  5CHE C;  1AXJ A;  1RFE A;  2X1J A;  1WV4 A;  3BPK A;  3EC6 A;  4HMV A;  4ZKY A;  3ZOD A;  2HHZ A;  2RDE A;  3F7E A;  1WLI A;  1I0R A;  2VPA A;  1W3P A;  4HMT A;  3HMZ A;  3U0I A;  4Y9I A;  3R5Z A;  4HMS A;  3E4V A;  2QEA A;  3U34 A;  3KYF A;  3H96 A;  3VY5 A;  2D37 A;  1WGB A;  1FLM A;  1XHN A;  3ZOH A;  2A2J A;  4YWN A;  2D38 A;  4HMU A;  3U35 A;  2OL5 A;  1VL7 A;  3DNH A;  4QVB A;  3AWH A;  1CI0 A;  2R6V A;  1W3O A;  3VYA A;  3TGV A;  1I0S A;  2D5M A;  2ARZ A;  3RH7 A;  1USF A;  2I51 A;  1G78 A;  2IML A;  1NRG A;  2HTD A;  2ECR A;  3K88 A;  3CB0 A;  4Z85 A;  3R5R A;  3FGE A; 
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