2GUJ | Genus

Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	19
sequence length	139
structure length	133
Chain Sequence	AQNTISGKEGRLFLDGEEMAHIKTFEANVEKNKSEVNIMGRRMTGHKTTGANGTGTATFYKVTSKFVLLMMDYVKKGSDPYFTLQAVLDDQSSGRGTERVTLYDVNFDSAKIASLDEEEVPFTFEDFDVPEKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 133 atoms

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133 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Three dimensional structure of the protein P54332 from Bacillus Subtilis. Northeast Structural Genomics Consortium target sr353. rcsb
molecule keywords	Phage-like element PBSX protein xkdM
molecule tags	Structural genomics, unknown function
source organism	Bacillus subtilis
total genus	19
structure length	133
sequence length	139
chains with identical sequence	B
ec nomenclature
pdb deposition date	2006-04-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF09393	DUF2001	Phage tail tube protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.110.40	Mainly Beta	Roll	Pnp Oxidase; Chain A	Pnp Oxidase; Chain A	2gujA01

2GUJA
chains in the Genus database with same CATH superfamily

4HX6A 1NRGA 4UHVA 3VY5A 3ZOHA 2X1JA 2IABA 2QCKA 3R5RA 2FHQA 3BNKA 2ASFA 2RDEA 3A6RA 4HMUA 1T9MA 1TY9A 1WLIA 1Y12A 3FGEA 3R5ZA 1I0RA 1I0SA 1W3QA 4L82A 3K88A 4R82A 1G79A 2ARZA 3BA3A 4HMSA 3HMZA 4TV4A 3HY8A 3B5MA 1RZ1A 3K87A 3K86A 2ED4A 3R5YA 1XHNA 2A2JA 2HHZA 1G77A 4Y9IA 2HTDA 3NFWA 1W9AA 5CHOA 1Y30A 3KYFA 5ESCA 4N7RC 2P5ZX 4ZKYA 2X1KA 3GASA 2NR4A 3ZOFA 3ZOCA 1G78A 1WLKA 2RE7A 2K4QA 3VY2A 3RH7A 1EJEA 2OU5A 3AMFA 3AWHA 2PTFA 4XHYA 3E4VA 2D37A 2HTIA 2I02A 2D5MA 2I51A 3CB0A 4HMTA 1VL7A 3ZODA 1USFA 4QVBA 1JNWA 2VPAA 3U5WA 3A6QA 4HMXA 2FURA 2QEAA 3ZOEA 3R5WA 1DNLA 1WV4A 3SWJA 1USCA 1RZ0A 1YLNA 2GUJA 2FG9A 4HMWA 3VYAA 2ECRA 3EC6A 3F7EA 3FKHA 4YBNA 3U35A 2E83A 3A20A 4HMVA 2ECUA 3KYGA 3HE1A 3R5PA 3ZOGA 2R6VA 3DMBA 5CHEC 3U34A 1XXOA 5JABA 1G76A 5BNCA 2IG6A 3IN6A 1CI0A 2OL5A 3TGVA 2IMLA 2Q9KA 3DNHA 4YWNA 2HQ7A 3U0IA 1W3OA 3EAAA 4F07A 3BPKA 1FLMA 1RFEA 4W64A 3PFTA 3DB0A 1W3RA 3V4HA 2R0XA 3H96A 3R5LA 1YOAA 3CP3A 4HKHA 4IRAA 2D38A 2D36A 4MTKA 2GJGA 1W3PA 4Z85A 2AQ6A 4XJ2A 1WGBA 2HQ9A 2L1TA 1AXJA
chains in the Genus database with same CATH topology

4MTKA 2GUJA 4UHVA 2P5ZX 2L1TA 2K4QA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2GUJ A; 
#chains in the Genus database with same CATH topology
 4HX6 A;  1NRG A;  4UHV A;  3VY5 A;  3ZOH A;  2X1J A;  2IAB A;  2QCK A;  3R5R A;  2FHQ A;  3BNK A;  2ASF A;  2RDE A;  3A6R A;  4HMU A;  1T9M A;  1TY9 A;  1WLI A;  1Y12 A;  3FGE A;  3R5Z A;  1I0R A;  1I0S A;  1W3Q A;  4L82 A;  3K88 A;  4R82 A;  1G79 A;  2ARZ A;  3BA3 A;  4HMS A;  3HMZ A;  4TV4 A;  3HY8 A;  3B5M A;  1RZ1 A;  3K87 A;  3K86 A;  2ED4 A;  3R5Y A;  1XHN A;  2A2J A;  2HHZ A;  1G77 A;  4Y9I A;  2HTD A;  3NFW A;  1W9A A;  5CHO A;  1Y30 A;  3KYF A;  5ESC A;  4N7R C;  2P5Z X;  4ZKY A;  2X1K A;  3GAS A;  2NR4 A;  3ZOF A;  3ZOC A;  1G78 A;  1WLK A;  2RE7 A;  2K4Q A;  3VY2 A;  3RH7 A;  1EJE A;  2OU5 A;  3AMF A;  3AWH A;  2PTF A;  4XHY A;  3E4V A;  2D37 A;  2HTI A;  2I02 A;  2D5M A;  2I51 A;  3CB0 A;  4HMT A;  1VL7 A;  3ZOD A;  1USF A;  4QVB A;  1JNW A;  2VPA A;  3U5W A;  3A6Q A;  4HMX A;  2FUR A;  2QEA A;  3ZOE A;  3R5W A;  1DNL A;  1WV4 A;  3SWJ A;  1USC A;  1RZ0 A;  1YLN A;  2GUJ A;  2FG9 A;  4HMW A;  3VYA A;  2ECR A;  3EC6 A;  3F7E A;  3FKH A;  4YBN A;  3U35 A;  2E83 A;  3A20 A;  4HMV A;  2ECU A;  3KYG A;  3HE1 A;  3R5P A;  3ZOG A;  2R6V A;  3DMB A;  5CHE C;  3U34 A;  1XXO A;  5JAB A;  1G76 A;  5BNC A;  2IG6 A;  3IN6 A;  1CI0 A;  2OL5 A;  3TGV A;  2IML A;  2Q9K A;  3DNH A;  4YWN A;  2HQ7 A;  3U0I A;  1W3O A;  3EAA A;  4F07 A;  3BPK A;  1FLM A;  1RFE A;  4W64 A;  3PFT A;  3DB0 A;  1W3R A;  3V4H A;  2R0X A;  3H96 A;  3R5L A;  1YOA A;  3CP3 A;  4HKH A;  4IRA A;  2D38 A;  2D36 A;  4MTK A;  2GJG A;  1W3P A;  4Z85 A;  2AQ6 A;  4XJ2 A;  1WGB A;  2HQ9 A;  2L1T A;  1AXJ A; 
#chains in the Genus database with same CATH homology
 4MTK A;  2GUJ A;  4UHV A;  2P5Z X;  2L1T A;  2K4Q A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2GUJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations