2GUJA

Three dimensional structure of the protein p54332 from bacillus subtilis. northeast structural genomics consortium target sr353.
Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
139
structure length
133
Chain Sequence
AQNTISGKEGRLFLDGEEMAHIKTFEANVEKNKSEVNIMGRRMTGHKTTGANGTGTATFYKVTSKFVLLMMDYVKKGSDPYFTLQAVLDDQSSGRGTERVTLYDVNFDSAKIASLDEEEVPFTFEDFDVPEKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S3 (25-33)TIV1 (5-8)EMPTYO1 (24-26)S1 (8-11)TI'1 (18-21)TIV10 (77-80)TI1 (76-79)S2 (14-17)TIV2 (17-20)S4 (57-65)TIV8 (45-49)TIV3 (36-39)TIV5 (41-45)TIV4 (39-42)TIV9 (46-50)AH1 (68-73)S6 (103-109)TIV12 (97-100)TIV11 (94-97)TI2 (78-81)AH2 (113-118)S5 (86-91)Updating...
connected with : NaN
publication title Three dimensional structure of the protein P54332 from Bacillus Subtilis. Northeast Structural Genomics Consortium target sr353.
rcsb
molecule keywords Phage-like element PBSX protein xkdM
molecule tags Structural genomics, unknown function
source organism Bacillus subtilis
total genus 19
structure length 133
sequence length 139
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09393 DUF2001 Phage tail tube protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.40 Mainly Beta Roll Pnp Oxidase; Chain A Pnp Oxidase; Chain A 2gujA01
2GUJA
chains in the Genus database with same CATH superfamily
3F7EA 1EJEA 3KYGA 4HMVA 3U5WA 3DB0A 1YLNA 3SWJA 2ED4A 2R6VA 1VL7A 3TGVA 1I0RA 3FGEA 2L1TA 3FKHA 2QCKA 4YWNA 1W3PA 3AWHA 3K88A 2D5MA 4HMXA 3HMZA 4UHVA 4HMTA 4MTKA 3K87A 3K86A 2VPAA 2A2JA 4Y9IA 3H96A 4XHYA 3DNHA 1WLIA 3VY5A 3NFWA 4F07A 2FURA 1G79A 2IG6A 3CB0A 4Z85A 2E83A 5CHOA 4HMUA 4W64A 5BNCA 4TV4A 3VY2A 3R5PA 2D37A 1FLMA 2X1JA 1G78A 4HMSA 4YBNA 1W3OA 1JNWA 2I51A 2D38A 1WV4A 1G77A 1T9MA 2HHZA 2ECUA 3AMFA 2ARZA 4HMWA 2HQ7A 4HX6A 2I02A 1XXOA 1NRGA 2ECRA 2IABA 2D36A 1RZ0A 4XJ2A 3HY8A 3HE1A 3B5MA 2HTDA 1YOAA 4L82A 3U35A 4HKHA 1XHNA 3R5LA 2OU5A 3ZOGA 3VYAA 1W3QA 3E4VA 3ZOFA 4ZKYA 3ZOEA 2ASFA 3GASA 3CP3A 2AQ6A 2GUJA 1CI0A 2HTIA 3KYFA 1USFA 2P5ZX 1WGBA 3EAAA 3IN6A 1W3RA 2GJGA 2IMLA 5ESCA 1AXJA 2RE7A 3V4HA 1TY9A 5JABA 1I0SA 1W9AA 1G76A 3EC6A 2HQ9A 2R0XA 1USCA 1RZ1A 3DMBA 1DNLA 2RDEA 2OL5A 3BPKA 3R5RA 3ZODA 3R5WA 3U0IA 2NR4A 3BA3A 3BNKA 4IRAA 2K4QA 3A20A 3ZOCA 1WLKA 2X1KA 3A6RA 2Q9KA 2FHQA 3A6QA 4QVBA 5CHEC 3PFTA 1Y12A 3R5ZA 3U34A 3ZOHA 4R82A 1RFEA 1Y30A 3RH7A 3R5YA 2FG9A 2QEAA 4N7RC 2PTFA
chains in the Genus database with same CATH topology
4MTKA 2L1TA 2P5ZX 2K4QA 2GUJA 4UHVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GUJ A; 
#chains in the Genus database with same CATH topology
 3F7E A;  1EJE A;  3KYG A;  4HMV A;  3U5W A;  3DB0 A;  1YLN A;  3SWJ A;  2ED4 A;  2R6V A;  1VL7 A;  3TGV A;  1I0R A;  3FGE A;  2L1T A;  3FKH A;  2QCK A;  4YWN A;  1W3P A;  3AWH A;  3K88 A;  2D5M A;  4HMX A;  3HMZ A;  4UHV A;  4HMT A;  4MTK A;  3K87 A;  3K86 A;  2VPA A;  2A2J A;  4Y9I A;  3H96 A;  4XHY A;  3DNH A;  1WLI A;  3VY5 A;  3NFW A;  4F07 A;  2FUR A;  1G79 A;  2IG6 A;  3CB0 A;  4Z85 A;  2E83 A;  5CHO A;  4HMU A;  4W64 A;  5BNC A;  4TV4 A;  3VY2 A;  3R5P A;  2D37 A;  1FLM A;  2X1J A;  1G78 A;  4HMS A;  4YBN A;  1W3O A;  1JNW A;  2I51 A;  2D38 A;  1WV4 A;  1G77 A;  1T9M A;  2HHZ A;  2ECU A;  3AMF A;  2ARZ A;  4HMW A;  2HQ7 A;  4HX6 A;  2I02 A;  1XXO A;  1NRG A;  2ECR A;  2IAB A;  2D36 A;  1RZ0 A;  4XJ2 A;  3HY8 A;  3HE1 A;  3B5M A;  2HTD A;  1YOA A;  4L82 A;  3U35 A;  4HKH A;  1XHN A;  3R5L A;  2OU5 A;  3ZOG A;  3VYA A;  1W3Q A;  3E4V A;  3ZOF A;  4ZKY A;  3ZOE A;  2ASF A;  3GAS A;  3CP3 A;  2AQ6 A;  2GUJ A;  1CI0 A;  2HTI A;  3KYF A;  1USF A;  2P5Z X;  1WGB A;  3EAA A;  3IN6 A;  1W3R A;  2GJG A;  2IML A;  5ESC A;  1AXJ A;  2RE7 A;  3V4H A;  1TY9 A;  5JAB A;  1I0S A;  1W9A A;  1G76 A;  3EC6 A;  2HQ9 A;  2R0X A;  1USC A;  1RZ1 A;  3DMB A;  1DNL A;  2RDE A;  2OL5 A;  3BPK A;  3R5R A;  3ZOD A;  3R5W A;  3U0I A;  2NR4 A;  3BA3 A;  3BNK A;  4IRA A;  2K4Q A;  3A20 A;  3ZOC A;  1WLK A;  2X1K A;  3A6R A;  2Q9K A;  2FHQ A;  3A6Q A;  4QVB A;  5CHE C;  3PFT A;  1Y12 A;  3R5Z A;  3U34 A;  3ZOH A;  4R82 A;  1RFE A;  1Y30 A;  3RH7 A;  3R5Y A;  2FG9 A;  2QEA A;  4N7R C;  2PTF A; 
#chains in the Genus database with same CATH homology
 4MTK A;  2L1T A;  2P5Z X;  2K4Q A;  2GUJ A;  4UHV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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