2GUJA

Three dimensional structure of the protein p54332 from bacillus subtilis. northeast structural genomics consortium target sr353.
Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
139
structure length
133
Chain Sequence
AQNTISGKEGRLFLDGEEMAHIKTFEANVEKNKSEVNIMGRRMTGHKTTGANGTGTATFYKVTSKFVLLMMDYVKKGSDPYFTLQAVLDDQSSGRGTERVTLYDVNFDSAKIASLDEEEVPFTFEDFDVPEKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S3 (25-33)TIV1 (5-8)EMPTYO1 (24-26)S1 (8-11)TI'1 (18-21)TIV10 (77-80)TI1 (76-79)S2 (14-17)TIV2 (17-20)S4 (57-65)TIV8 (45-49)TIV3 (36-39)TIV5 (41-45)TIV4 (39-42)TIV9 (46-50)AH1 (68-73)S6 (103-109)TIV12 (97-100)TIV11 (94-97)TI2 (78-81)AH2 (113-118)S5 (86-91)Updating...
connected with : NaN
publication title Three dimensional structure of the protein P54332 from Bacillus Subtilis. Northeast Structural Genomics Consortium target sr353.
rcsb
molecule keywords Phage-like element PBSX protein xkdM
molecule tags Structural genomics, unknown function
source organism Bacillus subtilis
total genus 19
structure length 133
sequence length 139
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09393 DUF2001 Phage tail tube protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.40 Mainly Beta Roll Pnp Oxidase; Chain A Pnp Oxidase; Chain A 2gujA01
2GUJA
chains in the Genus database with same CATH superfamily
2RDEA 1RZ0A 3ZOHA 2VPAA 3CB0A 4HMWA 1JNWA 1G76A 3R5YA 1YLNA 3V4HA 2FG9A 3AWHA 3BNKA 2E83A 3AMFA 2I51A 4F07A 2IMLA 2D36A 2D5MA 4YBNA 1T9MA 1VL7A 2X1KA 4L82A 3DMBA 2QEAA 3ZODA 1W3PA 3CP3A 1DNLA 1NRGA 2FURA 2I02A 5CHOA 4R82A 3NFWA 3VY5A 3ZOFA 1G77A 1TY9A 1W3QA 1W9AA 2PTFA 2ASFA 1FLMA 1WLKA 4MTKA 4Y9IA 3HMZA 2OL5A 1I0SA 1W3RA 2D37A 1WGBA 3ZOGA 1WLIA 2K4QA 2A2JA 1USFA 3A20A 3VYAA 3U34A 2QCKA 2ARZA 2IABA 1W3OA 4W64A 3SWJA 1G79A 3FGEA 3BA3A 1Y30A 3KYFA 1RZ1A 3ZOCA 1I0RA 2X1JA 3B5MA 3U0IA 3U5WA 1G78A 2OU5A 2Q9KA 3TGVA 1YOAA 4TV4A 3HE1A 3R5WA 3EAAA 5JABA 5ESCA 3BPKA 2P5ZX 2RE7A 3KYGA 4HMSA 3RH7A 4HMVA 3F7EA 2ED4A 2GJGA 3R5PA 1WV4A 5CHEC 2HQ9A 3EC6A 2R0XA 2HTDA 1EJEA 1CI0A 3ZOEA 3DB0A 3K86A 3R5RA 1USCA 4XHYA 3K87A 3FKHA 2ECRA 3A6RA 3A6QA 2IG6A 4XJ2A 4HKHA 2R6VA 2NR4A 1Y12A 3E4VA 2L1TA 4ZKYA 2D38A 3GASA 3PFTA 4HMTA 4N7RC 3DNHA 3VY2A 4HMXA 4Z85A 3R5ZA 5BNCA 3U35A 4HX6A 3R5LA 1RFEA 4QVBA 1XXOA 4IRAA 1XHNA 1AXJA 4UHVA 2AQ6A 2HQ7A 4HMUA 2GUJA 3H96A 2HTIA 2HHZA 3HY8A 2ECUA 3IN6A 2FHQA 4YWNA 3K88A
chains in the Genus database with same CATH topology
2K4QA 4UHVA 2P5ZX 2L1TA 4MTKA 2GUJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GUJ A; 
#chains in the Genus database with same CATH topology
 2RDE A;  1RZ0 A;  3ZOH A;  2VPA A;  3CB0 A;  4HMW A;  1JNW A;  1G76 A;  3R5Y A;  1YLN A;  3V4H A;  2FG9 A;  3AWH A;  3BNK A;  2E83 A;  3AMF A;  2I51 A;  4F07 A;  2IML A;  2D36 A;  2D5M A;  4YBN A;  1T9M A;  1VL7 A;  2X1K A;  4L82 A;  3DMB A;  2QEA A;  3ZOD A;  1W3P A;  3CP3 A;  1DNL A;  1NRG A;  2FUR A;  2I02 A;  5CHO A;  4R82 A;  3NFW A;  3VY5 A;  3ZOF A;  1G77 A;  1TY9 A;  1W3Q A;  1W9A A;  2PTF A;  2ASF A;  1FLM A;  1WLK A;  4MTK A;  4Y9I A;  3HMZ A;  2OL5 A;  1I0S A;  1W3R A;  2D37 A;  1WGB A;  3ZOG A;  1WLI A;  2K4Q A;  2A2J A;  1USF A;  3A20 A;  3VYA A;  3U34 A;  2QCK A;  2ARZ A;  2IAB A;  1W3O A;  4W64 A;  3SWJ A;  1G79 A;  3FGE A;  3BA3 A;  1Y30 A;  3KYF A;  1RZ1 A;  3ZOC A;  1I0R A;  2X1J A;  3B5M A;  3U0I A;  3U5W A;  1G78 A;  2OU5 A;  2Q9K A;  3TGV A;  1YOA A;  4TV4 A;  3HE1 A;  3R5W A;  3EAA A;  5JAB A;  5ESC A;  3BPK A;  2P5Z X;  2RE7 A;  3KYG A;  4HMS A;  3RH7 A;  4HMV A;  3F7E A;  2ED4 A;  2GJG A;  3R5P A;  1WV4 A;  5CHE C;  2HQ9 A;  3EC6 A;  2R0X A;  2HTD A;  1EJE A;  1CI0 A;  3ZOE A;  3DB0 A;  3K86 A;  3R5R A;  1USC A;  4XHY A;  3K87 A;  3FKH A;  2ECR A;  3A6R A;  3A6Q A;  2IG6 A;  4XJ2 A;  4HKH A;  2R6V A;  2NR4 A;  1Y12 A;  3E4V A;  2L1T A;  4ZKY A;  2D38 A;  3GAS A;  3PFT A;  4HMT A;  4N7R C;  3DNH A;  3VY2 A;  4HMX A;  4Z85 A;  3R5Z A;  5BNC A;  3U35 A;  4HX6 A;  3R5L A;  1RFE A;  4QVB A;  1XXO A;  4IRA A;  1XHN A;  1AXJ A;  4UHV A;  2AQ6 A;  2HQ7 A;  4HMU A;  2GUJ A;  3H96 A;  2HTI A;  2HHZ A;  3HY8 A;  2ECU A;  3IN6 A;  2FHQ A;  4YWN A;  3K88 A; 
#chains in the Genus database with same CATH homology
 2K4Q A;  4UHV A;  2P5Z X;  2L1T A;  4MTK A;  2GUJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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